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A Comparative Study of Theoretical Graph Models for Characterizing Structural Networks of Human Brain

DOI: 10.1155/2013/201735

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Abstract:

Previous studies have investigated both structural and functional brain networks via graph-theoretical methods. However, there is an important issue that has not been adequately discussed before: what is the optimal theoretical graph model for describing the structural networks of human brain? In this paper, we perform a comparative study to address this problem. Firstly, large-scale cortical regions of interest (ROIs) are localized by recently developed and validated brain reference system named Dense Individualized Common Connectivity-based Cortical Landmarks (DICCCOL) to address the limitations in the identification of the brain network ROIs in previous studies. Then, we construct structural brain networks based on diffusion tensor imaging (DTI) data. Afterwards, the global and local graph properties of the constructed structural brain networks are measured using the state-of-the-art graph analysis algorithms and tools and are further compared with seven popular theoretical graph models. In addition, we compare the topological properties between two graph models, namely, stickiness-index-based model (STICKY) and scale-free gene duplication model (SF-GD), that have higher similarity with the real structural brain networks in terms of global and local graph properties. Our experimental results suggest that among the seven theoretical graph models compared in this study, STICKY and SF-GD models have better performances in characterizing the structural human brain network. 1. Introduction The human brain is intrinsically organized into distinct large-scale functional networks, and cognitive functions arise from the dynamic interactions of distributed brain areas operating in these networks [1]. New advances in neuroimaging techniques have shown the possibility of systematic exploring the human brain formal complex network perspective. Graph theory provides a theoretical framework in which the topological properties of the brain networks can be examined such as centrality, clustering, efficiency, hierarchy, modularity, robustness, small-worldness, and synchronizability [2], and it can reveal important information about both the global and local organizations of the human brain networks. The improved characterization of brain networks achieved via graph-theoretical methods provides not only parsimonious accounts of normal cognitive processes [3], but also novel insights into psychiatric and neurological disorders such as Alzheimer’s disease [4, 5], multiple sclerosis [6], and attention-deficit disorder [7]. Many complex systems show remarkably similar

References

[1]  M. D. Fox, A. Z. Snyder, J. L. Vincent, M. Corbetta, D. C. van Essen, and M. E. Raichle, “The human brain is intrinsically organized into dynamic, anticorrelated functional networks,” Proceedings of the National Academy of Sciences of the United States of America, vol. 102, no. 27, pp. 9673–9678, 2005.
[2]  E. Bullmore and O. Sporns, “Complex brain networks: graph theoretical analysis of structural and functional systems,” Nature Reviews Neuroscience, vol. 10, no. 3, pp. 186–198, 2009.
[3]  S. L. Bressler and V. Menon, “Large-scale brain networks in cognition: emerging methods and principles,” Trends in Cognitive Sciences, vol. 14, no. 6, pp. 277–290, 2010.
[4]  Y. He, Z. Chen, and A. Evans, “Structural insights into aberrant topological patterns of large-scale cortical networks in Alzheimer's disease,” Journal of Neuroscience, vol. 28, no. 18, pp. 4756–4766, 2008.
[5]  C. J. Stam, B. F. Jones, G. Nolte, M. Breakspear, and P. Scheltens, “Small-world networks and functional connectivity in Alzheimer's disease,” Cerebral Cortex, vol. 17, no. 1, pp. 92–99, 2007.
[6]  Y. He, A. Dagher, Z. Chen et al., “Impaired small-world efficiency in structural cortical networks in multiple sclerosis associated with white matter lesion load,” Brain, vol. 132, no. 12, pp. 3366–3379, 2009.
[7]  L. Wang, C. Zhu, Y. He et al., “Altered small-world brain functional networks in children with attention-deficit/hyperactivity disorder,” Human Brain Mapping, vol. 30, no. 2, pp. 638–649, 2009.
[8]  E. Bullmore, A. Barnes, D. S. Bassett et al., “Generic aspects of complexity in brain imaging data and other biological systems,” NeuroImage, vol. 47, no. 3, pp. 1125–1134, 2009.
[9]  D. J. Watts and S. H. Strogatz, “Collective dynamics of “small-world” networks,” Nature, vol. 393, no. 6684, pp. 440–442, 1998.
[10]  R. Cohen and S. Havlin, “Scale-free networks are ultra-small,” Physical Review Letters, vol. 90, no. 5, Article ID 058701, 2003.
[11]  K. Amunts, A. Malikovic, H. Mohlberg, T. Schormann, and K. Zilles, “Brodmann's areas 17 and 18 brought into stereotaxic space: where and how variable?” NeuroImage, vol. 11, no. 1, pp. 66–84, 2000.
[12]  C. F. Beckmann, M. DeLuca, J. T. Devlin, and S. M. Smith, “Investigations into resting-state connectivity using independent component analysis,” Philosophical Transactions of the Royal Society B, vol. 360, no. 1457, pp. 1001–1013, 2005.
[13]  Y. Zang, T. Jiang, Y. Lu, Y. He, and L. Tian, “Regional homogeneity approach to fMRI data analysis,” NeuroImage, vol. 22, no. 1, pp. 394–400, 2004.
[14]  K. Li, L. Guo, D. Zhu, X. Hu, J. Han, and T. Liu, “Individual functional ROI optimization via maximization of group-wise consistency of structural and functional profiles,” Neuroinformatics, vol. 10, no. 3, pp. 225–242, 2012.
[15]  K. Li, L. Guo, C. Faraco et al., “Visual analytics of brain networks,” NeuroImage, vol. 61, no. 1, pp. 82–97, 2012.
[16]  X. Hu, D. Zhu, P. Lv, K. Li, et al., “Fine-granularity functional interaction signatures for characterization of brain conditions,” Neuroinformatics, vol. 11, no. 3, pp. 301–317, 2013.
[17]  T. Liu, “A few thoughts on brain ROIs,” Brain Imaging and Behavior, vol. 5, no. 3, pp. 189–202, 2011.
[18]  D. Zhu, K. Li, L. Guo, et al., “DICCCOL: dense individualized and common connectivity-based cortical landmarks,” Cerebral Cortex, vol. 23, no. 4, pp. 786–800, 2013.
[19]  O. Kuchaiev, A. Stevanovi?, W. Hayes, and N. Pr?ulj, “GraphCrunch 2: software tool for network modeling, alignment and clustering,” BMC Bioinformatics, vol. 12, article 24, 2011.
[20]  P. Erdos and A. Renyi, “On the evolution of random graphs,” Publicationes Mathematicae, vol. 6, pp. 290–297, 1959.
[21]  M. Molloy and B. Reed, “A critical point of random graphs with a given degree sequence,” Random Structures and Algorithms, vol. 6, no. 2-3, pp. 161–180, 1995.
[22]  M. Penrose, Random Geometric Graphs, Oxford University Press, New York, NY, USA, 2003.
[23]  N. Przulj, D. G. Corneil, and I. Jurisica, “Modeling interactome: scale-free or geometric?” Bioinformatics, vol. 20, no. 18, pp. 3508–3515, 2004.
[24]  N. Przulj, O. Kuchaiev, A. Stevanovic, and W. Hayes, “Geometric evolutionary dynamics of protein interaction networks,” in Proceedings of the Pacific Symposium on Biocomputing, pp. 178–189, Stanford, Calif, USA, 2010.
[25]  A.-L. Barabasi and R. Albert, “Emergence of scaling in random networks,” Science, vol. 286, no. 5439, pp. 509–512, 1999.
[26]  A. Vazqueza, A. Flamminia, A. Maritana, and A. Vespignani, “Modeling of protein interaction networks,” Complexus, vol. 1, no. 1, pp. 38–44, 2003.
[27]  N. Przulj and D. J. Higham, “Modelling protein-protein interaction networks via a stickiness index,” Journal of the Royal Society Interface, vol. 3, no. 10, pp. 711–716, 2006.
[28]  D. Zhang, L. Guo, G. Li et al., “Automatic cortical surface parcellation based on fiber density information,” in Proceedings of the 7th IEEE International Symposium on Biomedical Imaging (ISBI '10), pp. 1133–1136, Xi'an, China, April 2010.
[29]  http://www-sop.inria.fr/asclepios/software/MedINRIA/.
[30]  T. Liu, H. Li, K. Wong, A. Tarokh, L. Guo, and S. T. C. Wong, “Brain tissue segmentation based on DTI data,” NeuroImage, vol. 38, no. 1, pp. 114–123, 2007.
[31]  C. Bishop, Pattern Recognition and Machine Learning, Springer, Cambridge, Mass, USA, 2006.
[32]  N. Przulj, “Biological network comparison using graphlet degree distribution,” Bioinformatics, vol. 23, no. 2, pp. e177–e183, 2007.
[33]  M. D. Humphries and K. Gurney, “Network “small-world-ness”: a quantitative method for determining canonical network equivalence,” Plos ONE, vol. 3, no. 4, Article ID e2051, 2008.
[34]  S. Achard and E. Bullmore, “Efficiency and cost of economical brain functional networks,” Plos Computational Biology, vol. 3, no. 2, article e17, 2007.

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