[1] | Pearce T (2012) Convergence and parallelism in evolution: a neo-Gouldian account. British Journal for the Philosophy of Science 63: 429–448.
|
[2] | Blount ZD, Borland CZ, Lenski RE (2008) Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli. Proceedings of the National Academy of Sciences of the United States of America 105: 7899–7906.
|
[3] | Gould SJ (1989) Wonderful life. New York: W.W. Norton & Co.
|
[4] | Arendt J, Reznick D (2008) Moving beyond phylogenetic assumptions about evolutionary convergence: response to Leander. Trends in Ecology & Evolution 23: 483–484.
|
[5] | Arendt J, Reznick D (2008) Convergence and parallelism reconsidered: what have we learned about the genetics of adaptation? Trends in Ecology & Evolution 23: 26–32.
|
[6] | Elmer KR, Meyer A (2011) Adaptation in the age of ecological genomics: insights from parallelism and convergence. Trends in Ecology & Evolution 26: 298–306.
|
[7] | Leander BS (2008) Different modes of convergent evolution reflect phylogenetic distances: a reply to Arendt and Reznick. Trends in Ecology & Evolution 23: 481–482.
|
[8] | Stringham SA, Aldenhoven JT, Tampio AJ, Miller AL, Lunsford AR, et al. (2011) Diverse genetic mechanisms underlie pelvic reduction in ninespine sticklebacks (Pungitius pungitius). Integrative and Comparative Biology 51: E134–E134.
|
[9] | Janz N, Nyblom K, Nylin S (2001) Evolutionary dynamics of host-plant specialization: a case study of the tribe Nymphalini. Evolution Int J Org Evolution 55: 783–796.
|
[10] | Swigonova Z, Kjer KM (2004) Phylogeny and host-plant association in the leaf beetle genus Trirhabda LeConte (Coleoptera: Chrysomelidae). Molecular Phylogenetics and Evolution 32: 358–374.
|
[11] | Frolov AN, Bourguet D, Ponsard S (2007) Reconsidering the taxomony of several Ostrinia species in the light of reproductive isolation: a tale for Ernst Mayr. Biological Journal of the Linnean Society 91: 49–72.
|
[12] | Mutuura A, Monroe E (1970) Taxonomy and distribution of the European corn borer and allied species: genus Ostrinia (Lepidoptera: Pyralidae). Memoirs of the Entomological Society of America 71: 1–112.
|
[13] | Bethenod MT, Thomas Y, Rousset F, Frérot B, Pélozuelo L, et al. (2005) Genetic isolation between two sympatric host plant races of the European corn borer, Ostrinia nubilalis Hübner. II: assortative mating and host-plant preferences for oviposition. Heredity 94: 264–270.
|
[14] | Bontemps A, Bourguet D, Pélozuelo L, Bethenod MT, Ponsard S (2004) Managing evolution of Bacillus thuringiensis resistance in natural populations of the European corn borer, Ostrinia nubilalis: host plant, host race and pherotype of adult males at aggregation sites. Proceedings of the Royal Society Biological Sciences 271: 2179–2185.
|
[15] | Malausa T, Pélissié B, Piveteau V, Pelissier C, Bourguet D, et al. (2008) Differences in oviposition behaviour of two sympatric sibling species of the genus Ostrinia. Bulletin of Entomological Research 98: 193–201.
|
[16] | Calcagno V, Thomas Y, Bourguet D (2007) Sympatric host races of the European corn borer: adaptation to host plants and hybrid performance. Journal of Evolutionary Biology 20: 1720–1729.
|
[17] | Folcher L, Bourguet D, Thiery D, Pélozuelo L, Phalip M, et al. (2011) Changes in parasitoid communities over time and space: a historical case study of the maize pest Ostrinia nubilalis. PLoS ONE 6: e25374.
|
[18] | Pélissié B, Ponsard S, Tokarev YS, Audiot P, Pélissier C, et al. (2010) Did the introduction of maize into Europe provide enemy-free space to Ostrinia nubilalis? Parasitism differences between two sibling species of the genus Ostrinia. Journal of Evolutionary Biology 23: 350–361.
|
[19] | Thomas Y, Bethenod MT, Pélozuelo L, Frérot B, Bourguet D (2003) Genetic isolation between two sympatric host-plant races of the European corn borer, Ostrinia nubilalis Hübner. I. sex pheromone, moth emergence timing, and parasitism. Evolution 57: 261–273.
|
[20] | Pélozuelo L, Malosse C, Genestier G, Guenego H, Frérot B (2004) Host-plant specialization in pheromone strains of the European corn borer Ostrinia nubilalis in France. Journal of Chemical Ecology 30: 335–352.
|
[21] | Pélozuelo L, Meusnier S, Audiot P, Bourguet D, Ponsard S (2007) Assortative mating between European corn borer pheromone races: beyond assortative meeting. PLoS ONE 2: e555.
|
[22] | Lassance JM, L?fstedt C (2009) Concerted evolution of male and female display traits in the European corn borer, Ostrinia nubilalis. BMC Biology 7: 10.
|
[23] | Malausa T, Bethenod MT, Bontemps A, Bourguet D, Cornuet JM, et al. (2005) Assortative mating in sympatric host races of the European corn borer. Science 308: 258–260.
|
[24] | Frolov AN, Audiot P, Bourguet D, Kononchuk AG, Malysh JM, et al. (2012) "From Russia with lobe": genetic differentiation in trilobed uncus Ostrinia spp. follows food plant, not hairy legs. Heredity 108: 147–156.
|
[25] | Ishikawa Y, Takanashi T, Kim C, Hoshizaki S, Tatsuki S, et al. (1999) Ostrinia spp. in Japan: their host plants and sex pheromones. Entomologia Experimentalis et Applicata 91: 237–244.
|
[26] | Alpuerto VV (1985) Corn borer (Ostrinia furnacalis Guenee) (Lepidoptera:pyraustidae) damage to different varieties of cotton (Gossypium hirsutum L.) and its ovipositional and feeding preference: University of the Philippines at Los Banos, College, Laguna. 92 p.
|
[27] | Lu ZX, Yang ZF, Hu C (1996) Effects of host plants on feeding, development and reproduction of Asian corn borer. Acta Phytophylacica Sinica 23: 126–130.
|
[28] | Talekar NS, Chih PL, Yii FY, Ming YL, Yi DW, et al. (1991) Characteristics of infestation by Ostrinia furnacalis (Lepidoptera, Pyralidae) in mungbean. Journal of Economic Entomology 84: 1499–1502.
|
[29] | Kojima W, Fujii T, Suwa M, Miyazawa M, Ishikawa Y (2010) Physiological adaptation of the Asian corn borer Ostrinia furnacalis to chemical defenses of its host plant, maize. Journal of Insect Physiology 56: 1349–1355.
|
[30] | Ando T, Saito O, Arai K, Takahashi N (1980) (Z)- and (E)-12-tetradecenyl acetates: sex pheromone components of oriental corn borer (Lepidoptera: Pyralidae). Agricultural and Biological Chemistry 44: 2643–2649.
|
[31] | Tenaillon MI, Charcosset A (2011) A European perspective on maize history. Comptes Rendus Biologies 334: 221–228.
|
[32] | Gay JP (1999) Ma?s. Biarritz: Atlantica (In French). 619 p.
|
[33] | Midamegbe A, Vitalis R, Malausa T, Delava E, Cros-Arteil S, et al. (2011) Scanning the European corn borer (Ostrinia spp.) genome for adaptive divergence between host-affiliated sibling species. Molecular Ecology 20: 1414–1430.
|
[34] | Cox K, Broeck AV, Van Calster H, Mergeay J (2011) Temperature-related natural selection in a wind-pollinated tree across regional and continental scales. Molecular Ecology 20: 2724–2738.
|
[35] | Fischer MC, Foll M, Excoffier L, Heckel G (2011) Enhanced AFLP genome scans detect local adaptation in high-altitude populations of a small rodent (Microtus arvalis). Molecular Ecology 20: 1450–1462.
|
[36] | Holt BG, C?té IM, Emerson BC (2011) Searching for speciation genes: molecular evidence for selection associated with colour morphotypes in the Caribbean reef fish genus Hypoplectrus. PLoS ONE 6.
|
[37] | Nosil P, Egan SR, Funk DJ (2008) Heterogeneous genomic differentiation between walking-stick ecotypes: "Isolation by adaptation" and multiple roles for divergent selection. Evolution 62: 316–336.
|
[38] | Nunes VL, Beaumont MA, Butlin RK, Paulo OS (2011) Multiple approaches to detect outliers in a genome scan for selection in ocellated lizards (Lacerta lepida) along an environmental gradient. Molecular Ecology 20: 193–205.
|
[39] | Oetjen K, Reusch TBH (2007) Genome scans detect consistent divergent selection among subtidal vs. intertidal populations of the marine angiosperm Zostera marina. Molecular Ecology 16: 5156–5157.
|
[40] | Poncet BN, Herrmann D, Gugerli F, Taberlet P, Holderegger R, et al. (2010) Tracking genes of ecological relevance using a genome scan in two independent regional population samples of Arabis alpina. Molecular Ecology 19: 2896–2907.
|
[41] | Storz JF (2005) Using genome scans of DNA polymorphism to infer adaptive population divergence. Molecular Ecology 14: 671–688.
|
[42] | Xia HUI, Camus-Kulandaivelu L, Stephan W, Tellier A, Zhang Z (2010) Nucleotide diversity patterns of local adaptation at drought-related candidate genes in wild tomatoes. Molecular Ecology 19: 4144–4154.
|
[43] | Sambrook J, Fritsch E, Maniatis T (1989) Molecular Cloning: a Laboratory Manual. New York: Cold Spring Harbor Laboratory Press.
|
[44] | Vekemans X, Beauwens T, Lemaire M, Roldan-Ruiz I (2002) Data from amplified fragment length polymorphism (AFLP) markers show indication of size homoplasy and of a relationship between degree of homoplasy and fragment size. Molecular Ecology 11: 139–151.
|
[45] | Zhivotovsky LA (1999) Estimating population structure in diploids with multilocus dominant DNA markers. Molecular Ecology 8: 907–913.
|
[46] | Nei M (1987) Molecular evolutionary genetics. New, York: Columbia University Press.
|
[47] | Lynch M, Milligan BG (1994) Analysis of population genetic structure with RAPD markers. Molecular Ecology 3: 91–99.
|
[48] | Pritchard JK, Stephens M, Donnelly P (2000) Inference of population structure using multilocus genotype data. Genetics 155: 945–959.
|
[49] | Falush D, Stephens M, Pritchard JK (2007) Inference of population structure using multilocus genotype data: dominant markers and null alleles. Molecular Ecology Notes 7: 574–578.
|
[50] | Evanno G, Regnaut S, Goudet J (2005) Detecting the number of clusters of individuals using the software structure: a simulation study. Molecular Ecology 14: 2611–2620.
|
[51] | Jakobsson M, Rosenberg NA (2007) CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 23: 1801–1806.
|
[52] | Foll M, Gaggiotti O (2008) A genome scan method to identify selected loci appropriate for both dominant and codominant markers: a bayesian perspective. Genetics 180: 977–993.
|
[53] | Beaumont MA (2004) Recent developments in genetic data analysis: what can they tell us about human demographic history? Heredity 92: 365–379.
|
[54] | Lewis PO, Zaykin D (2002) Genetic Data Analysis: Computer Program for the Analysis of Allelic Data. In: http://hydrodictyon.eeb.uconn.edu/people?/plewis/software.phpaa, editor.1.1. ed.
|
[55] | Hill WG (1974) Estimation of linkage disequilibrium in randomly mating populations. Heredity 33: 229–239.
|
[56] | Dasmahapatra KK, Blum MJ, Aiello A, Hackwell S, Davies N, et al. (2002) Inferences from a rapidly moving hybrid zone. Evolution 56: 741–753.
|
[57] | Whitlock MC (2005) Combining probability from independent tests: the weighted Z-method is superior to Fisher's approach. Journal of Evolutionary Biology 18: 1368–1373.
|
[58] | Schroder MS, Culhane AC, Quackenbush J, Haibe-Kains B (2011) survcomp: an R/Bioconductor package for performance assessment and comparison of survival models. Bioinformatics 27: 3206–3208.
|
[59] | R Development Core Team (2009) R: A Language and Environment for Statistical Computing; Computing RFfS, editor. Vienna, Austria.
|
[60] | Benjamini Y, Hochberg Y (1995) Controlling the false discovery rate - a practical and powerful approach to multiple testing. Journal of the Royal Statistical Society Series B - Methodological 57: 289–300.
|
[61] | Carvajal-Rodriguez A, de Una-Alvarez J, Rolan-Alvarez E (2009) A new multitest correction (SGoF) that increases its statistical power when increasing the number of tests. BMC Bioinformatics 10.
|
[62] | Fontaine MC, Baird SJE, Piry S, Ray N, Tolley KA, et al.. (2007) Rise of oceanographic barriers in continuous populations of a cetacean: the genetic structure of harbour porpoises in Old World waters. Bmc Biology 5.
|
[63] | Kim CG, Hoshizaki S, Huang YP, Tatsuki S, Ishikawa Y (1999) Usefulness of mitochondrial COII gene sequences in examining phylogenetic relationships in the Asian corn borer, Ostrinia furnacalis, and allied species (Lepidoptera : Pyralidae). Applied Entomology and Zoology 34: 405–412.
|
[64] | Malausa T, Leniaud L, Martin JF, Audiot P, Bourguet D, et al. (2007) Molecular differentiation at nuclear loci in French host races of the European corn borer (Ostrinia nubilalis). Genetics 176: 2343–2355.
|
[65] | Matsubayashi KW, Ohshima I, Nosil P (2010) Ecological speciation in phytophagous insects. Entomologia Experimentalis et Applicata 134: 1–27.
|
[66] | Jaquiéry J, Stoeckel S, Nouhaud P, Mieuzet L, Mahéo F, et al. (2012) Genome scans reveal candidate regions involved in the adaptation to host plant in the pea aphid complex. Molecular Ecology 21: 5251–5264.
|
[67] | Smadja CM, Canback B, Vitalis R, Gautier M, Ferrari J, et al. (2012) Large-scale candidate gene scan reveals the role of chemoreceptor genes in host plant specialization and speciation in the pea aphid. Evolution 66: 2723–2738.
|
[68] | Dworkin I, Jones CD (2009) Genetic changes accompanying the evolution of host specialization in Drosophila sechellia. Genetics 181: 721–736.
|
[69] | Matzkin LM (2012) Population transcriptomics of cactus host shifts in Drosophila mojavensis. Molecular Ecology 21: 2428–2439.
|
[70] | Leppik E, Frérot B (2012) Volatile organic compounds and host-plant specialization in European corn borer E and Z pheromone races. Chemoecology 22: 119–129.
|
[71] | Nosil P, Funk DJ, Ortiz-Barrientos D (2009) Divergent selection and heterogeneous genomic divergence. Molecular Ecology 18: 375–402.
|
[72] | Perez-Figueroa A, Garcia-Pereira MJ, Saura M, Rolan-Alvarez E, Caballero A (2010) Comparing three different methods to detect selective loci using dominant markers. Journal of Evolutionary Biology 23: 2267–2276.
|
[73] | Vitalis R (2012) DETSEL: a R-package to detect marker loci responding to selection. Data Production and Analysis in Population Genomics.
|
[74] | Vitalis R, Dawson K, Boursot P (2001) Interpretation of variation across marker loci as evidence of selection. Genetics 158: 1811–1823.
|
[75] | Vitalis R, Dawson K, Boursot P, Belkhir K (2003) DetSel 1.0: a computer program to detect markers responding to selection. Journal of Heredity 94: 429–431.
|
[76] | Beaumont MA, Nichols RA (1996) Evaluating loci for use in the genetic analysis of population structure. Proceedings of the Royal Society Biological Sciences Series B 263: 1619–1626.
|
[77] | Excoffier L, Hofer T, Foll M (2009) Detecting loci under selection in a hierarchically structured population. Heredity 103: 285–298.
|
[78] | Gompert Z, Buerkle CA (2011) A hierarchical Bayesian model for next-generation population genomics. Genetics 187: 903–917.
|
[79] | Via S, West J (2008) The genetic mosaic suggests a new role for hitchhiking in ecological speciation. Molecular Ecology 17: 4334–4345.
|
[80] | Apple JL, Grace T, Joern A, Amand PS, Wisely SM (2010) Comparative genome scan detects host-related divergent selection in the grasshopper Hesperotettix viridis. Molecular Ecology 19: 4012–4028.
|
[81] | Scotti-Saintagne C, Mariette S, Porth I, Goicoechea PG, Barreneche T, et al. (2004) Genome scanning for interspecific differentiation between two closely related oak species Quercus robur L. and Q petraea (Matt.) Liebl. Genetics 168: 1615–1626.
|
[82] | Dopman EB, Bogdanowicz SM, Harrison RG (2004) Genetic mapping of sexual isolation between E and Z pheromone strains of the European corn borer (Ostrinia nubilalis). Genetics 167: 301–309.
|
[83] | Guthrie WD, Dollinger EJ, Stetson JF (1965) Chromosome studies of the European corn borer, smartweed borer, and lotus borer (Pyralidae). Annals of the Entomological Society of America 58: 100–105.
|
[84] | Nosil P, Feder JL (2011) Genomic divergence during speciation: causes and consequences. Philosophical Transactions of the Royal Society B: Biological Sciences 367: 332–342.
|
[85] | Strasburg JL, Sherman NA, Wright KM, Moyle LC, Willis JH, et al. (2012) What can patterns of differentiation across plant genomes tell us about adaptation and speciation? Philosophical Transactions of the Royal Society B-Biological Sciences 367: 364–373.
|
[86] | Nadeau NJ, Whibley A, Jones RT, Davey JW, Dasmahapatra KK, et al. (2011) Genomic islands of divergence in hybridizing Heliconius butterflies identified by large-scale targeted sequencing. Philosophical Transactions of the Royal Society B: Biological Sciences 367: 343–353.
|
[87] | Via S (2012) Divergence hitchhiking and the spread of genomic isolation during ecological speciation-with-gene-flow. Philosophical Transactions of the Royal Society B-Biological Sciences 367: 451–460.
|
[88] | Renaut S, Maillet N, Normandeau E, Sauvage C, Derome N, et al. (2012) Genome-wide patterns of divergence during speciation: the lake whitefish case study. Philosophical Transactions of the Royal Society B: Biological Sciences 367: 354–363.
|
[89] | Hohenlohe PA, Bassham S, Currey M, Cresko WA (2012) Extensive linkage disequilibrium and parallel adaptive divergence across threespine stickleback genomes. Philosophical Transactions of the Royal Society B: Biological Sciences 367: 395–408.
|
[90] | Coates BS, Sumerford DV, Hellmich RL, Lewis LC (2005) Partial mitochondrial genome sequences of Ostrinia nubilalis and Ostrinia furnicalis. International Journal of Biological Sciences 1: 13–18.
|
[91] | Wu C-I (2001) The genic view of the process of speciation. Journal of Evolutionary Biology 14: 851–865.
|
[92] | Bierne N, Welch J, Loire E, Bonhomme F, David P (2011) The coupling hypothesis: why genome scans may fail to map local adaptation genes. Molecular Ecology 20: 2044–2072.
|
[93] | Rundle HD, Nosil P (2005) Ecological speciation. Ecology Letters 8: 336–352.
|
[94] | Roelofs WL, Liu W, Hao G, Jiao H, Rooney AP, et al. (2002) Evolution of moth sex pheromones via ancestral genes. Proceedings of the National Academy of Sciences of the United States of America 99: 13621–13626.
|
[95] | Takanashi T, Huang YP, Takahasi KR, Hoshizaki S, Tatsuki S, et al. (2005) Genetic analysis and population survey of sex pheromone variation in the adzuki bean borer moth, Ostrinia scapulalis. Biological Journal of the Linnean Society 84: 143–160.
|
[96] | Dopman EB, Robbins PS, Seaman A (2009) Components of reproductive isolation between North American pheromone strains of the European corn borer. Evolution 64: 881–902.
|
[97] | Karpati Z, Molnar B, Szocs G (2007) Pheromone titer and mating frequency of E- and Z-strains of the European corn borer, Ostrinia nubilalis: fluctuations during scotophase and age dependence. Acta Phytopathologica Entomologica Hungarica 10: 331–341.
|
[98] | Liebherr J, Roelofs W (1975) Laboratory hybridization and mating period studies using 2 pheromone strains of Ostrinia nubilalis. Annals of the Entomological Society of America 68: 305–309.
|