[1] | Holling CS (1973) Resilience and stability of ecological systems. Annual Review of Ecology and Systematics 4: 1–23.
|
[2] | Nystr?m M, Graham NAJ, Lokrantz J, Norstr?m AV (2008) Capturing the cornerstones of coral reef resilience: linking theory to practice. Coral Reefs 27: 795–809.
|
[3] | Travers MJ, Potter IC, Clarke KR, Newman SJ, Hutchins JB (2010) The inshore fish faunas over soft substrates and reefs on the tropical west coast of Australia differ and change with latitude and bioregion. Journal of Biogeography 37: 148–169.
|
[4] | Hughes TP, Baird AH, Bellwood DR, Card M, Connolly SR, et al. (2003) Climate change, human impacts, and the resilience of coral reefs. Science 301: 929–933.
|
[5] | Bellwood DR, Hughes TP, Folke C, Nystrom M (2004) Confronting the coral reef crisis. Nature 429: 827–833.
|
[6] | Hughes TP, Graham NAJ, Jackson JBC, Mumby PJ, Steneck RS (2010) Rising to the challenge of sustaining coral reef resilience. Trends in Ecology & Evolution 25: 633–642.
|
[7] | Norstr?m AV, Nystr?m M, Lokrantz J, Folke C (2009) Alternative states on coral reefs: beyond coral-macroalgal phase shifts. Marine Ecology-Progress Series 376: 295–306.
|
[8] | Hughes TP (1994) Catastrophes, phase shifts, and large-scale degradation of a Caribbean coral reef. Science 265: 1547–1551.
|
[9] | Lirman D (2001) Competition between macroalgae and corals: effects of herbivore exclusion and increased algal biomass on coral survivorship and growth. Coral Reefs 19: 392–399.
|
[10] | Hughes TP, Rodrigues MJ, Bellwood DR, Ceccarelli D, Hoegh-Guldberg O, et al. (2007) Phase shifts, herbivory, and the resilience of coral reefs to climate change. Current Biology 17: 360–365.
|
[11] | Bellwood DR, Hughes TP, Hoey AS (2006) Sleeping functional group drives coral-reef recovery. Current Biology 16: 2434–2439.
|
[12] | Adam TC, Schmitt RJ, Holbrook SJ, Brooks AJ, Edmunds PJ, et al.. (2011) Herbivory, connectivity, and ecosystem resilience: response of a coral reef to a large-scale perturbation. Plos One 6..
|
[13] | Gardner TA, Cote IM, Gill JA, Grant A, Watkinson AR (2003) Long-term region-wide declines in Caribbean corals. Science 301: 958–960.
|
[14] | Graham NAJ, Wilson SK, Jennings S, Polunin NVC, Bijoux JP, et al. (2006) Dynamic fragility of oceanic coral reef ecosystems. Proceedings of the National Academy of Sciences of the United States of America 103: 8425–8429.
|
[15] | Williams ID, Polunin NVC (2001) Large-scale associations between macroalgal cover and grazer biomass on mid-depth reefs in the Caribbean. Coral Reefs 19: 358–366.
|
[16] | Friedlander AM, Brown E, Monaco ME (2007) Defining reef fish habitat utilization patterns in Hawaii: comparisons between marine protected areas and areas open to fishing. Marine Ecology-Progress Series 351: 221–233.
|
[17] | Mumby PJ, Hastings A, Edwards HJ (2007) Thresholds and the resilience of Caribbean coral reefs. Nature 450: 98–101.
|
[18] | Wismer S, Hoey AS, Bellwood DR (2009) Cross-shelf benthic community structure on the Great Barrier Reef: relationships between macroalgal cover and herbivore biomass. Marine Ecology Progress Series 376: 45–54.
|
[19] | Rasher DB, Engel S, Bonito V, Fraser GJ, Montoya JP, et al. (2012) Effects of herbivory, nutrients, and reef protection on algal proliferation and coral growth on a tropical reef. Oecologia 169: 187–198.
|
[20] | Paddack MJ, Cowen RK, Sponaugle S (2006) Grazing pressure of herbivorous coral reef fishes on low coral-cover reefs. Coral Reefs 25: 461–472.
|
[21] | Green A, Bellwood DR (2009) Monitoring functional groups of herbivorous reef fishes as indicators of coral reef resilience - a practical guide for coral reef managers in the Asia Pacific region. Gland, Switzerland. 70 p.
|
[22] | Hoey AS, Bellwood DR (2008) Cross-shelf variation in the role of parrotfishes on the Great Barrier Reef. Coral Reefs 27: 37–47.
|
[23] | Goatley CHR, Bellwood DR (2010) Biologically mediated sediment fluxes on coral reefs: sediment removal and off-reef transportation by the surgeonfish Ctenochaetus striatus. Marine Ecology-Progress Series 415: 237–245.
|
[24] | Marshell A, Mumby PJ (2012) Revisiting the functional roles of the surgeonfish Acanthurus nigrofuscus and Ctenochaetus striatus. Coral Reefs 31: 1093–1101.
|
[25] | Bellwood DR, Choat JH (1990) A functional analysis of grazing in parrotfishes (family Scaridae) - the ecological implications. Environmental Biology of Fishes 28: 189–214.
|
[26] | Steneck RS (1988) Herbivory on coral reefs: a synthesis; Townsville, Australia.
|
[27] | Hay ME (1984) Patterns of fish and urchin grazing on Caribbean coral reefs - are previous results typical? Ecology 65: 446–454.
|
[28] | Mumby PJ (2006) The impact of exploiting grazers (scaridae) on the dynamics of Caribbean coral reefs. Ecological Applications 16: 747–769.
|
[29] | Fabricius K, De'ath G, McCook L, Turak E, Williams DM (2005) Changes in algal, coral and fish assemblages along water quality gradients on the inshore Great Barrier Reef. Marine Pollution Bulletin 51: 384–398.
|
[30] | Littler MM, Littler DS (1985) Factors controlling relative dominance of primary producers on biotic reefs; Tahiti.
|
[31] | McClanahan TR, Obura D (1997) Sedimentation effects on shallow coral communities in Kenya. Journal of Experimental Marine Biology and Ecology 209: 103–122.
|
[32] | Mumby PJ, Bejarano S, Golbuu Y, Steneck RS, Arnold SN, et al. (2013) Empirical relationships among resilience indicators on Micronesian reefs. Coral Reefs 32: 213–226.
|
[33] | Lewis SM (1986) The role of herbivorous fishes in the organization of a Caribbean reef community. Ecological Monographs 56: 183–200.
|
[34] | Fox RJ, Bellwood DR (2007) Quantifying herbivory across a coral reef depth gradient. Marine Ecology-Progress Series 339: 49–59.
|
[35] | Mumby PJ (2009) Herbivory versus corallivory: are parrotfish good or bad for Caribbean coral reefs? Coral Reefs 28: 683–690.
|
[36] | Ayotte P, McCoy K, Williams I, Zamzow J (2011) Coral Reef Ecosystem Division standard operating procedures: data collection for rapid ecological assessment fish surveys. : Pacific Islands Fisheries Science Center, National Marine Fisheries Service, NOAA. 24 p.
|
[37] | Kulbicki M, Guillemot N, Amand M (2005) A general approach to length-weight relationships for New Caledonian lagoon fishes. Cybium 29: 235–252.
|
[38] | Froese R, Pauly D (2010) Fishbase.
|
[39] | Kohler KE, Gill SM (2006) Coral point count with excel extensions (CPCe): a visual basic program for the determination of coral and substrate coverage using random point count methodology. Computers & Geosciences 32: 1259–1269.
|
[40] | Bunnefeld N, Phillimore AB (2012) Island, archipelago and taxon effects: mixed models as a means of dealing with the imperfect design of nature's experiments. Ecography 35: 15–22.
|
[41] | MacNeil MA, Graham NAJ, Conroy MJ, Fonnesbeck CJ, Polunin NVC, et al. (2008) Detection heterogeneity in underwater visual-census data. Journal of Fish Biology 73: 1748–1763.
|
[42] | Sabater MG, Tofaeono SP (2007) Scale and benthic composition effects on biomass and trophic group distribution of reef fishes in American Samoa. Pacific Science 61: 503–520.
|
[43] | Williams ID, Walsh WJ, Schroeder RE, Friedlander AM, Richards BL, et al. (2008) Assessing the importance of fishing impacts on Hawaiian coral reef fish assemblages along regional-scale human population gradients. Environmental Conservation 35: 261–272.
|
[44] | Cheal A, Emslie M, Miller I, Sweatman H (2012) The distribution of herbivorous fishes on the Great Barrier Reef. Marine Biology 159: 1143–1154.
|
[45] | Bonaldo RM, Bellwood DR (2011) Parrotfish predation on massive Porites on the Great Barrier Reef. Coral Reefs 30: 259–269.
|
[46] | Choat JH, Clements KD, Robbins WD (2002) The trophic status of herbivorous fishes on coral reefs - I: Dietary analyses. Marine Biology 140: 613–623.
|
[47] | Choat JH, Robbins WD, Clements KD (2004) The trophic status of herbivorous fishes on coral reefs - II. Food processing modes and trophodynamics. Marine Biology 145: 445–454.
|
[48] | Hoey AS, Bellwood DR (2011) Suppression of herbivory by macroalgal density: a critical feedback on coral reefs? Ecology Letters 14: 267–273.
|
[49] | Burkepile DE, Hay ME (2008) Herbivore species richness and feeding complementarity affect community structure and function on a coral reef. Proceedings of the National Academy of Sciences of the United States of America 105: 16201–16206.
|
[50] | Trip EL, Choat JH, Wilson DT, Robertson DR (2008) Inter-oceanic analysis of demographic variation in a widely distributed Indo-Pacific coral reef fish. Marine Ecology-Progress Series 373: 97–109.
|
[51] | Birrell CL, McCook LJ, Willis BL (2005) Effects of algal turfs and sediment on coral settlement. Marine Pollution Bulletin 51: 408–414.
|
[52] | Birrell CL, McCook LJ, Willis BL, Diaz-Pulido GA (2008) Effects of benthic algae on the replenishment of corals and the implications for the resilience of coral reefs. In: Gibson RN, Atkinson RJA, Gordon JDM, editors. Oceanography and Marine Biology: An Annual Review, Vol 46 . pp. 25–+.
|
[53] | O'Leary JK, Potts DC, Braga JC, McClanahan TR (2012) Indirect consequences of fishing: reduction of coralline algae suppresses juvenile coral abundance. Coral Reefs 31: 547–559.
|
[54] | Heyward AJ, Negri AP (1999) Natural inducers for coral larval metamorphosis. Coral Reefs 18: 273–279.
|
[55] | Zuur AF, Ieno EN, Walker NJ, Saveliev AA, Smith GM (2009) Mixed effects models and extensions in ecology with R. New York: Springer. 574 p.
|
[56] | Hoey AS, Pratchett MS, Cvitanovic C (2011) High macroalgal cover and low coral recruitment undermines the potential resilience of the world's southernmost coral reef assemblages. Plos One 6..
|
[57] | Trapon ML, Pratchett MS, Hoey AS (2013) Spatial variation in abundance, size and orientation of juvenile corals related to the biomass of parrotfishes on the Great Barrier Reef, Australia. Plos One 8: e57788.
|
[58] | Mumby PJ, Harborne AR (2010) Marine reserves enhance the recovery of corals on Caribbean reefs. Plos One 5..
|
[59] | Gust N (2002) Scarid biomass on the northern Great Barrier Reef: the influence of exposure, depth and substrata. Environmental Biology of Fishes 64: 353–366.
|
[60] | Ohman MC, Rajasuriya A (1998) Relationships between habitat structure and fish communities on coral and sandstone reefs. Environmental Biology of Fishes 53: 19–31.
|
[61] | Willliams I, Richards BL, Sandin SA, Baum JK, Schroeder RE, et al.. (2011) Differences in reef fish assemblages between populated and remote reefs spanning multiple archipelagos across the Central and Western Pacific. Journal of Marine Biology 2011: 14 pages.
|
[62] | Chateau O, Wantiez L (2009) Movement patterns of four coral reef fish species in a fragmented habitat in New Caledonia: implications for the design of marine protected area networks. Ices Journal of Marine Science 66: 50–55.
|
[63] | Choat JH, Pears R (2003) A rapid, quantitative survey method for large, vulnerable reef fishes. In: Wilkinson C, Green AL, Dionne S, editors. Monitoring coral reef marine protected areas A practical guide on how monitoring can support effective management MPAs : Australian Institute of Marine Science and the IUCN Marine Program Publication. pp. 68.
|
[64] | Dickens LC, Goatley CHR, Tanner JK, Bellwood DR (2011) Quantifying relative diver effects in underwater visual censuses. Plos One 6..
|
[65] | Williams ID, Walsh WJ, Tissot BN, Hallacher LE (2006) Impact of observers' experience level on counts of fishes in underwater visual surveys. Marine Ecology Progress Series 310: 185–191.
|
[66] | Watson DL, Harvey ES (2007) Behaviour of temperate and sub-tropical reef fishes towards a stationary SCUBA diver. Marine and Freshwater Behaviour and Physiology 40: 85–103.
|
[67] | Rasher DB, Hoey AS, Hay ME (2013) Consumer diversity interacts with prey defenses to drive ecosystem function. Ecology 94: 1347–1358.
|
[68] | Green AL, Bellwood DR (2009) Monitoring functional groups of herbivorous reef fishes as indicators of coral reef resilience: a practical guide for coral reef managers in the Asia Pacific region. Gland, Switzerland: IUCN.
|
[69] | Bell JD, Galzin R (1984) Influence of live coral cover on coral reef fish communities. Marine Ecology-Progress Series 15: 265–274.
|
[70] | Hart AM, Klumpp DW (1996) Response of herbivorous fishes to crown-of-thorns starfish Acanthaster planci outbreaks.1. Substratum analysis and feeding ecology of Acanthurus nigrofuscus and Scarus frenatus. Marine Ecology-Progress Series 132: 11–19.
|
[71] | Tolimieri N (1998) Contrasting effects of microhabitat use on large-scale adult abundance in two families of Caribbean reef fishes. Marine Ecology-Progress Series 167: 227–239.
|