[1] | Vallejo CG, Serrano R (1989) Physiology of mutants with reduced expression of plasma membrane H+-ATPase. Yeast 5: 307–319.
|
[2] | Forsberg H, Ljungdahl PO (2001) Sensors of extracellular nutrients in Saccharomyces cerevisiae. Curr Genet 40: 91–109.
|
[3] | Beck T, Schmidt A, Hall MN (1999) Starvation induces vacuolar targeting and degradation of the tryptophan permease in yeast. J Cell Biol 146: 1227–1238.
|
[4] | Kriel J, Haesendonckx S, Rubio-Texeira M, Van Zeebroeck G, Thevelein JM (2011) From transporter to transceptor: signaling from transporters provokes re-evaluation of complex trafficking and regulatory controls: endocytic internalization and intracellular trafficking of nutrient transceptors may, at least in part, be governed by their signaling function. Bioessays 33: 870–879.
|
[5] | Berchtold D, Piccolis M, Chiaruttini N, Riezman I, Riezman H, et al. (2012) Plasma membrane stress induces relocalization of Slm proteins and activation of TORC2 to promote sphingolipid synthesis. Nat Cell Biol 14: 542–547.
|
[6] | Spira F, Mueller NS, Beck G, von Olshausen P, Beig J, et al. (2012) Patchwork organization of the yeast plasma membrane into numerous coexisting domains. Nat Cell Biol 14: 640–648.
|
[7] | Malinsky J, Opekarova M, Tanner W (2010) The lateral compartmentation of the yeast plasma membrane. Yeast 27: 473–478.
|
[8] | West M, Zurek N, Hoenger A, Voeltz GK (2011) A 3D analysis of yeast ER structure reveals how ER domains are organized by membrane curvature. J Cell Biol 193: 333–346.
|
[9] | Manford AG, Stefan CJ, Yuan HL, Macgurn JA, Emr SD (2012) ER-to-Plasma Membrane Tethering Proteins Regulate Cell Signaling and ER Morphology. Dev Cell 23: 1129–1140.
|
[10] | Loewen CJ, Young BP, Tavassoli S, Levine TP (2007) Inheritance of cortical ER in yeast is required for normal septin organization. J Cell Biol 179: 467–483.
|
[11] | Stefan CJ, Manford AG, Baird D, Yamada-Hanff J, Mao Y, et al. (2011) Osh proteins regulate phosphoinositide metabolism at ER-plasma membrane contact sites. Cell 144: 389–401.
|
[12] | Toulmay A, Prinz WA (2012) A conserved membrane-binding domain targets proteins to organelle contact sites. J Cell Sci 125: 49–58.
|
[13] | Giordano F, Saheki Y, Idevall-Hagren O, Colombo SF, Pirruccello M, et al. (2013) PI(4,5)P2-Dependent and Ca(2+)-Regulated ER-PM Interactions Mediated by the Extended Synaptotagmins. Cell 153: 1494–1509.
|
[14] | Schroeder BC, Cheng T, Jan YN, Jan LY (2008) Expression cloning of TMEM16A as a calcium-activated chloride channel subunit. Cell 134: 1019–1029.
|
[15] | Caputo A, Caci E, Ferrera L, Pedemonte N, Barsanti C, et al. (2008) TMEM16A, a membrane protein associated with calcium-dependent chloride channel activity. Science 322: 590–594.
|
[16] | Yang YD, Cho H, Koo JY, Tak MH, Cho Y, et al. (2008) TMEM16A confers receptor-activated calcium-dependent chloride conductance. Nature 455: 1210–1215.
|
[17] | Yang H, Kim A, David T, Palmer D, Jin T, et al. (2012) TMEM16F Forms a Ca(2+)-Activated Cation Channel Required for Lipid Scrambling in Platelets during Blood Coagulation. Cell 151: 111–122.
|
[18] | Fischer MA, Temmerman K, Ercan E, Nickel W, Seedorf M (2009) Binding of plasma membrane lipids recruits the yeast integral membrane protein Ist2 to the cortical ER. Traffic 10: 1084–1097.
|
[19] | Maass K, Fischer MA, Seiler M, Temmerman K, Nickel W, et al. (2009) A signal comprising a basic cluster and an amphipathic alpha-helix interacts with lipids and is required for the transport of Ist2 to the yeast cortical ER. J Cell Sci 122: 625–635.
|
[20] | Wolf W, Kilic A, Schrul B, Lorenz H, Schwappach B, et al. (2012) Yeast ist2 recruits the endoplasmic reticulum to the plasma membrane and creates a ribosome-free membrane microcompartment. PLoS One 7: e39703.
|
[21] | Entian KD (1986) Glucose repression: a complex regulatory system in yeast. Microbiol Sci 3: 366–371.
|
[22] | DeRisi JL, Iyer VR, Brown PO (1997) Exploring the metabolic and genetic control of gene expression on a genomic scale. Science 278: 680–686.
|
[23] | Wang Y, Pierce M, Schneper L, Guldal CG, Zhang X, et al. (2004) Ras and Gpa2 mediate one branch of a redundant glucose signaling pathway in yeast. PLoS Biol 2: E128.
|
[24] | Serrano R, Kielland-Brandt MC, Fink GR (1986) Yeast plasma membrane ATPase is essential for growth and has homology with (Na++K+), K+- and Ca2+-ATPases. Nature 319: 689–693.
|
[25] | Miesenbock G, De Angelis DA, Rothman JE (1998) Visualizing secretion and synaptic transmission with pH-sensitive green fluorescent proteins. Nature 394: 192–195.
|
[26] | Dechant R, Binda M, Lee SS, Pelet S, Winderickx J, et al. (2010) Cytosolic pH is a second messenger for glucose and regulates the PKA pathway through V-ATPase. Embo J 29: 2515–2526.
|
[27] | Orij R, Urbanus ML, Vizeacoumar FJ, Giaever G, Boone C, et al. (2012) Genome-wide analysis of intracellular pH reveals quantitative control of cell division rate by pH(c) in Saccharomyces cerevisiae. Genome Biol 13: R80.
|
[28] | Porat Z, Wender N, Erez O, Kahana C (2005) Mechanism of polyamine tolerance in yeast: novel regulators and insights. Cell Mol Life Sci 62: 3106–3116.
|
[29] | Adams A, Gottschling DE, Kaiser CA, Stearns T (1997) Methods in Yeast Genetics: Cold Spring Harbour Laboratory Press, Cold Spring Harbour, NY.
|
[30] | Cohen R, Engelberg D (2007) Commonly used Saccharomyces cerevisiae strains (e.g. BY4741, W303) are growth sensitive on synthetic complete medium due to poor leucine uptake. FEMS Microbiol Lett 273: 239–243.
|
[31] | Ljungdahl PO (2009) Amino-acid-induced signalling via the SPS-sensing pathway in yeast. Biochem Soc Trans 37: 242–247.
|
[32] | Ljungdahl PO, Daignan-Fornier B (2012) Regulation of amino acid, nucleotide, and phosphate metabolism in Saccharomyces cerevisiae. Genetics 190: 885–929.
|
[33] | Janke C, Magiera MM, Rathfelder N, Taxis C, Reber S, et al. (2004) A versatile toolbox for PCR-based tagging of yeast genes: new fluorescent proteins, more markers and promoter substitution cassettes. Yeast 21: 947–962.
|
[34] | Khmelinskii A, Keller PJ, Bartosik A, Meurer M, Barry JD, et al. (2012) Tandem fluorescent protein timers for in vivo analysis of protein dynamics. Nat Biotechnol.
|
[35] | Schmidt A, Beck T, Koller A, Kunz J, Hall MN (1998) The TOR nutrient signalling pathway phosphorylates NPR1 and inhibits turnover of the tryptophan permease. Embo J 17: 6924–6931.
|
[36] | Umebayashi K, Nakano A (2003) Ergosterol is required for targeting of tryptophan permease to the yeast plasma membrane. J Cell Biol 161: 1117–1131.
|
[37] | Lin CH, MacGurn JA, Chu T, Stefan CJ, Emr SD (2008) Arrestin-related ubiquitin-ligase adaptors regulate endocytosis and protein turnover at the cell surface. Cell 135: 714–725.
|
[38] | MacGurn JA, Hsu PC, Smolka MB, Emr SD (2011) TORC1 regulates endocytosis via Npr1-mediated phosphoinhibition of a ubiquitin ligase adaptor. Cell 147: 1104–1117.
|
[39] | Martinez-Munoz GA, Kane P (2008) Vacuolar and plasma membrane proton pumps collaborate to achieve cytosolic pH homeostasis in yeast. J Biol Chem 283: 20309–20319.
|
[40] | Young BP, Shin JJ, Orij R, Chao JT, Li SC, et al. (2010) Phosphatidic acid is a pH biosensor that links membrane biogenesis to metabolism. Science 329: 1085–1088.
|
[41] | Portillo F (2000) Regulation of plasma membrane H(+)-ATPase in fungi and plants. Biochim Biophys Acta 1469: 31–42.
|
[42] | Estrada E, Agostinis P, Vandenheede JR, Goris J, Merlevede W, et al. (1996) Phosphorylation of yeast plasma membrane H+-ATPase by casein kinase I. J Biol Chem. 271: 32064–32072.
|
[43] | Fernandes AR, Sa-Correia I (2003) Transcription patterns of PMA1 and PMA2 genes and activity of plasma membrane H+-ATPase in Saccharomyces cerevisiae during diauxic growth and stationary phase. Yeast 20: 207–219.
|
[44] | Stefan CJ, Manford AG, Emr SD (2013) ER-PM connections: sites of information transfer and inter-organelle communication. Curr Opin Cell Biol 25: 434–442.
|
[45] | Le Gall S, Neuhof A, Rapoport T (2004) The endoplasmic reticulum membrane is permeable to small molecules. Mol Biol Cell 15: 447–455.
|
[46] | Forgac M (2007) Vacuolar ATPases: rotary proton pumps in physiology and pathophysiology. Nat Rev Mol Cell Biol 8: 917–929.
|
[47] | Samarao SS, Teodoro CE, Silva FE, Ribeiro CC, Granato TM, et al. (2009) V H+-ATPase along the yeast secretory pathway: energization of the ER and Golgi membranes. Biochim Biophys Acta 1788: 303–313.
|
[48] | Orci L, Ravazzola M, Le Coadic M, Shen WW, Demaurex N, et al. (2009) From the Cover: STIM1-induced precortical and cortical subdomains of the endoplasmic reticulum. Proc Natl Acad Sci U S A 106: 19358–19362.
|
[49] | Braun NA, Morgan B, Dick TP, Schwappach B (2010) The yeast CLC protein counteracts vesicular acidification during iron starvation. J Cell Sci 123: 2342–2350.
|
[50] | Orij R, Postmus J, Ter Beek A, Brul S, Smits GJ (2009) In vivo measurement of cytosolic and mitochondrial pH using a pH-sensitive GFP derivative in Saccharomyces cerevisiae reveals a relation between intracellular pH and growth. Microbiology 155: 268–278.
|
[51] | Ayer A, Fellermeier S, Fife C, Li SS, Smits G, et al. (2012) A genome-wide screen in yeast identifies specific oxidative stress genes required for the maintenance of sub-cellular redox homeostasis. PLoS One 7: e44278.
|
[52] | Kim Y, Ramirez-Montealegre D, Pearce DA (2003) A role in vacuolar arginine transport for yeast Btn1p and for human CLN3, the protein defective in Batten disease. Proc Natl Acad Sci U S A 100: 15458–15462.
|
[53] | Kim Y, Chattopadhyay S, Locke S, Pearce DA (2005) Interaction among Btn1p, Btn2p, and Ist2p reveals potential interplay among the vacuole, amino acid levels, and ion homeostasis in the yeast Saccharomyces cerevisiae. Eukaryot Cell 4: 281–288.
|
[54] | Roth AF, Wan J, Bailey AO, Sun B, Kuchar JA, et al. (2006) Global analysis of protein palmitoylation in yeast. Cell 125: 1003–1013.
|
[55] | Stradalova V, Blazikova M, Grossmann G, Opekarova M, Tanner W, et al. (2012) Distribution of cortical endoplasmic reticulum determines positioning of endocytic events in yeast plasma membrane. PLoS One 7: e35132.
|
[56] | Kuehn MJ, Schekman R, Ljungdahl PO (1996) Amino acid permeases require COPII components and the ER resident membrane protein Shr3p for packaging into transport vesicles in vitro. J Cell Biol 135: 585–595.
|
[57] | Ljungdahl PO, Gimeno CJ, Styles CA, Fink GR (1992) SHR3: a novel component of the secretory pathway specifically required for localization of amino acid permeases in yeast. Cell 71: 463–478.
|
[58] | Odorizzi G, Babst M, Emr SD (2000) Phosphoinositide signaling and the regulation of membrane trafficking in yeast. Trends Biochem Sci 25: 229–235.
|
[59] | Johansen J, Ramanathan V, Beh CT (2012) Vesicle trafficking from a lipid perspective: Lipid regulation of exocytosis in Saccharomyces cerevisiae. Cell Logist 2: 151–160.
|
[60] | Peters LZ, Hazan R, Breker M, Schuldiner M, Ben-Aroya S (2013) Formation and dissociation of proteasome storage granules are regulated by cytosolic pH. J Cell Biol 201: 663–671.
|
[61] | Hughes AL, Gottschling DE (2012) An early age increase in vacuolar pH limits mitochondrial function and lifespan in yeast. Nature 492: 261–265.
|
[62] | Rubio-Texeira M, Van Zeebroeck G, Thevelein JM (2012) Peptides induce persistent signaling from endosomes by a nutrient transceptor. Nat Chem Biol 8: 400–408.
|
[63] | Brachmann CB, Davies A, Cost GJ, Caputo E, Li J, et al. (1998) Designer deletion strains derived from Saccharomyces cerevisiae S288C: a useful set of strains and plasmids for PCR-mediated gene disruption and other applications. Yeast 14: 115–132.
|
[64] | Khmelinskii A, Meurer M, Duishoev N, Delhomme N, Knop M (2011) Seamless gene tagging by endonuclease-driven homologous recombination. PLoS One 6: e23794.
|
[65] | Mumberg D, Muller R, Funk M (1995) Yeast vectors for the controlled expression of heterologous proteins in different genetic backgrounds. Gene 156: 119–122.
|