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Diversity  2013 

Setting Conservation Priorities in a Widespread Species: Phylogeographic and Physiological Variation in the Lake Chub, Couesius plumbeus (Pisces: Cyprinidae)

DOI: 10.3390/d5020149

Keywords: intraspecific variation, species-at-risk, phylogeography, thermal tolerance, Cyprinidae

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Abstract:

Defining units of conservation below the species level is a widely accepted conservation priority, but is especially challenging for widespread taxa that have experienced diverse geographic histories and exist across heterogenous environments. The lake chub (Pisces: Couesius plumbeus) is a widespread freshwater fish in North America and occurs from the southcentral USA to northwestern Alaska and Canada. We used mtDNA sequence analysis to test for divergent lineages predicted to occur as a result of survival of lake chub in distinct glacial refugia. Lake chub consisted of two major mtDNA lineages separated by 3.8% sequence divergence which are probably late to pre-Pleistocene in origin. We combined these data with those consistent with thermal adaptation in fish living in thermal springs versus those living in a lake with wide seasonal temperature variation, and with data on distribution of lake chub in major watershed units. We assessed these data against objective criteria developed to identify conservation units under Canadian endangered species legislation. Our analysis identified twelve major units of conservation within C. plumbeus that could be assessed under Canada’s Species-at-Risk Act. Our study illustrates how different character traits manifested at very different spatial scales can be used to define conservation units within widely-distributed taxa.

References

[1]  Meffe, G.K.; Carroll, C.R. Principles of Conservation Biology; Sinauer Associates: Sunderland, MA, USA, 1994; p. 600.
[2]  Hilborn, R.; Quinn, T.P.; Schindler, D.E.; Rogers, D.E. Biocomplexity and fisheries sustainability. Proc. Natl. Acad. Sci. USA 2003, 100, 6564–6568, doi:10.1073/pnas.1037274100.
[3]  Brito, D. Overcoming the Linnean shortfall: Data deficiency and biological survey priorities. Basic Appl. Ecol. 2010, 11, 709–713, doi:10.1016/j.baae.2010.09.007.
[4]  Gaston, K.J.; Fuller, R.A. Commonness, population depletion and conservation biology. Trends Ecol. Evol. 2008, 23, 14–19, doi:10.1016/j.tree.2007.11.001.
[5]  Hughes, J.B.; Daily, G.C.; Ehrlich, P.R. Population diversity: Its extent and extinction. Science 1997, 278, 689–692, doi:10.1126/science.278.5338.689.
[6]  Luck, G.W.; Daily, G.C.; Ehrlich, P.R. Population diversity and ecosystem services. Trends Ecol. Evol. 2003, 18, 331–336, doi:10.1016/S0169-5347(03)00100-9.
[7]  Millar, C.I.; Libby, W.J. Strategies for Conserving Clinal, Ecotypic, and Disjunct Population Diversity in Widespread Species. In Genetics and Conservation of Rare Plants; Falk, D.A., Holsinger, K.E., Eds.; Oxford University Press: New York, NY, USA, 1991; pp. 149–170.
[8]  United States Endangered Species Act. Title 16 United States Code, Sections 1531-1544. Available online: http://www.biologicaldiversity.org/campaigns/esa/esatext.html (accessed on 1 March 2013).
[9]  COSEWIC. Guidelines for recognizing designatable units. Appendix F5. In Operations and Procedures Manual; Committee on the Status of Endangered Wildlife in Canada: Ottawa, ON, Canada, 2012.
[10]  Lee, D.S.; Gilbert, C.R.; Hocutt, C.H.; Jenkins, R.E.; McAllister, D.E.; Stauffer, J.R., Jr. Atlas of North American Freshwater Fishes; North Carolina State Museum of Natural History: Raleigh, NC, USA, 1980.
[11]  Dymond, J.R. A list of the freshwater fishes of Canada east of the Rocky Mountains. Roy. Ontario Mus. Zool. Misc. Pub. 1947, 1, 36.
[12]  Lindsey, C.C. Distribution and taxonomy of fishes of the Mackenzie Basin of British Columbia. J. Fish. Res. Board Can. 1956, 13, 759–789, doi:10.1139/f56-044.
[13]  COSEWIC. COSEWIC Assessment and Status Report on the Lake Chub (Couesius plumbeus) in Canada. Committee on the Status of Endangered Wildlife in Canada: Ottawa, ON, Canada, 2004.
[14]  Darveau, C.; Taylor, E.B.; Schulte, P.M. Thermal physiology of warm spring colonists: Variation among Lake Chub (Cyprinidae: Couesius plumbeus) populations. Physiol. Biochem. Zool. 2012, 85, 607–617, doi:10.1086/665539.
[15]  Bernatchez, L.; Dodson, J.J. Phylogeographic structure in mitochondrial DNA of the lake whitefish (Coregonus clupeaformis) and its relation to Pleistocene glaciations. Evolution 1991, 45, 1016–1035, doi:10.2307/2409706.
[16]  Turgeon, J.; Bernatchez, L. Mitochondrial DNA phylogeography of lake cisco (Coregonus artedi): Evidence supporting extensive secondary contacts between two glacial races. Mol. Ecol. 2001, 10, 987–1004, doi:10.1046/j.1365-294X.2001.01248.x.
[17]  Wilson, C.C.; Hebert, P.D.N. Phylogeography and postglacial dispersal oflake trout(Salvelinus namaycush) in North America. Can. J. Fish. Aquat. Sci. 1998, 55, 1010–1024.
[18]  Lee-Yaw, J.T.; Irwin, J.A.; Green, D.M. Postglacial range expansion from northern refugia by the wood frog. Rana sylvatica. Mol. Ecol. 2008, 17, 867–884, doi:10.1111/j.1365-294X.2007.03611.x.
[19]  McPhail, J.D. Freshwater Fishes of British Columbia; University of Alberta Press: Edmonton, Canada, 2007.
[20]  Maguire, K.C.; Stigall, A.Y. Paleobiogeography of Miocene Equinae of North America: A phylogenetic biogeographic analysis of the relative roles of climate, vicariance, and dispersal. Palaeogeog. Palaeoclim. Palaeoecol. 2008, 267, 175–184, doi:10.1016/j.palaeo.2008.06.014.
[21]  Houston, D.D.; Shiozawa, D.K.; Riddle, B.R. Phylogenetic relationships of the western North American cyprinid genus Richardsonius, with an overview of phylogeographic structure. Mol. Phylog. Evol. 2010, 55, 259–273, doi:10.1016/j.ympev.2009.10.017.
[22]  Douglas, M.E.; Douglas, M.R.; Schuett, G.W.; Porass, L.W.; Thomason, B.L. Genealogical concordance between mitochondrial and nuclear DNAs supports species recognition of the panamint rattlesnake (Crotalus mitchellii stephensi). Copeia 2007, 2007, 920–932.
[23]  The Zoogeography of North American Freshwater Fishes; Hocutt, C.H., Wiley, E.O., Eds.; John Wiley and Sons: New York, NY, USA, 1986.
[24]  COSEWIC. COSEWIC Assessment and Update Status Report on the Lake Sturgeon (Acipenser fulvescens) in Canada. Committee on the Status of Endangered Wildlife in Canada: Ottawa, ON, Canada, 2007. Available online: http://www.sararegistry.gc.ca/species/speciesDetails_e.cfm?sid=840#ot18/ (accessed on 15 January 2013).
[25]  COSEWIC. Designatable units at the appropriate scale for Lake Whitefish (Coregonus clupeaformis) in Canada. Committee on the Status of Endangered wildlife in Canada: Ottawa, ON, Canada, 2008.
[26]  COSEWIC. COSEWIC Assessment and Update Status Report on the Atlantic Salmon (Salmo salar) in Canada. Committee on the Status of Endangered Wildlife in Canada: Ottawa, ON, Canada, 2011. Available online: http://www.sararegistry.gc.ca/species/speciesDetails_e.cfm?sid=672#ot18/ (accessed on 15 January 2013).
[27]  Allendorf, F.W.; Bayles, D.; Bottom, D.L.; Currens, K.P.; Frissell, C.A.; Hankin, D.; Lichatowich, J.A.; Nehlsen, W.; Trotter, P.C.; Williams, T.H. Prioritizing Pacific salmon stocks for conservation. Conserv. Biol. 1997, 11, 140–152.
[28]  Petit, R.J.; El Mousadik, A.; Pons, O. Identifying populations for conservation based on genetic markers. Conserv. Biol. 1998, 12, 844–855, doi:10.1046/j.1523-1739.1998.96489.x.
[29]  Taylor, E.B.; Tamkee, P.; Keeley, E.; Parkinson, E. Conservation prioritization in widespread species: The use of genetic and morphological data to assess population distinctiveness in rainbow trout (Oncorhynchus mykiss) from British Columbia, Canada. Evol. Appl. 2011, 4, 100–115, doi:10.1111/j.1752-4571.2010.00136.x.
[30]  Bowen, B.W. Preserving genes, species, or ecosystems? Healing the fractured foundations ofconservation policy. Mol. Ecol. 1999, 8, S5–S10, doi:10.1046/j.1365-294X.1999.00798.x.
[31]  Bernatchez, L.; Wilson, C.C. Comparative phylogeography of Nearctic and Palearctic fishes. Mol. Ecol. 1998, 7, 431–452, doi:10.1046/j.1365-294x.1998.00319.x.
[32]  Moritz, C.; Faith, D.P. Comparative phylogeography and the identification of genetically divergent areas for conservation. Mol. Ecol. 2002, 7, 419–429, doi:10.1046/j.1365-294x.1998.00317.x.
[33]  Dowling, T.E.; Tibbets, C.A.; Minckley, W.L.; Smith, G.R. Evolutionary relationships of the plagopterins (Teleostei: Cyprinidae) from cytochrome b sequences. Copeia 2002, 2002, 665–678.
[34]  Palumbi, S.R. Nucleic Acids II: The Polymerase Chain Reaction. In Molecular Systematics, 2nd; Hillis, D.M., Moritz, C., Mable, B.K., Eds.; Sinauer Associates: Sunderland, MA, USA, 1996; pp. 205–247.
[35]  Hall, T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 1999, 41, 95–98.
[36]  Darriba, D.; Taboada, G.L.; Doallo, R.; Posada, D. jModelTest 2: More models, new heuristics and parallel computing. Nat. Methods 2012, 9, 772.
[37]  Posada, D.; Buckley, T.R. Model selection and model averaging in phylogenetics: Advantages of Akaike Information Criterion and Bayesian approaches over likelihood ratio tests. Syst. Biol. 2004, 53, 793–808, doi:10.1080/10635150490522304.
[38]  Tamura, K.; Peterson, D.; Peterson, K.; Stecher, G.; Nei, M.; Kumar, S. MEGA5: Molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28, 2731–2739, doi:10.1093/molbev/msr121.
[39]  Drummond, A.J.; Rambaut, A. BEAST: Bayesian evolutionary analysis by sampling trees. BMC Evol. Biol. 2007, 7, 214.
[40]  Smith, G.R.; Dowling, T.E.; Gobalet, K.W.; Lugaski, T.; Shiozawa, D.K.; Evans, R.P. Biogeography and Timing of Evolutionary Events among Great Basin Fishes. In Great Basin Aquatic Systems History; Hershler, R., Madsen, D.B., Currey, D.R., Eds.; Smithsonian Contributions to the Earth Sciences, Smithsonian Institution Press: Washington, DC, USA, 2002. Number 33; pp. 175–234.
[41]  Rambault, A.; Drummond, A.J. Bayesian evolutionary analysis of viruses: A practical introduction to BEAST. 2009. Available online: http://beast.bio.ed.ac.uk/Main_Page (accessed on 8 December 2012).
[42]  Harper, D.A.T.; Ryan, P.D. PAST: Paleontological Statistics software package for education and data analysis. Palaeontol. Electron. 2001, 4, 1–9.

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