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PollenCALC: Software for estimation of pollen compatibility of self-incompatible allo- and autotetraploid species

DOI: 10.1186/1471-2105-13-125

Keywords: Disomic inheritance, Polyploidy, Self-incompatibility, Software, Tetrasomic inheritance

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Abstract:

PollenCALC is a software tool written in C++ programming language that can predict pollen compatibility percentages for polyploid species with a two-locus (S, Z) self-incompatibility system. The program predicts pollen genotypes and frequencies based on defined meiotic parameters for allo- or autotetraploid species with a gametophytic S-Z SI system. These predictions can be used to obtain expected values for for diploid and for (allo- or autotetraploidy SI grasses.The information provided by this calculator can be used to predict compatibility of pair-crosses in plant breeding applications, to analyze segregation distortion for S and Z genes, as well as linked markers in mapping populations, hypothesis testing of the number of S and Z alleles in a pair cross, and the underlying genetic model.

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