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O(nloglogn) Algorithm for LCWIS over 3 Letters
3字符最长公共弱递增子串的O(nloglogn)算法

Keywords: Bounded heap,van Emde Boer Tree,LCWIS,Bioinformatics
约束堆
,vailEmdeBoas树,最长弱递增公共子串,生物信息学

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Abstract:

Longest common subsequence(LCS) and longest increasing subsequence(LIS) are two classic algorithm problems. Both of them have important applications in bioinformatics. In 2006,Brodal et al. proposed another string problem called longest common weakly increasing substring(LCWIS) problem,and they gave a linear time algorithm on 2-letter LCWIS problem,and a O(nlogn) time algorithm on 3-letter LCWIS problem. In our paper,we present a new algorithm on 3-letter LCWIS problem. This algorithm relies on existing sop...

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