The encapsulation of biomolecules in solid materials that retain the native properties of the molecule is a desired feature for the development of biosensors and biocatalysts. In the current study, protein entrapment in silica-based materials is explored using the sol-gel technique. This work surveys the effects of silica confinement on the structure of several model polypeptides, including apomyoglobin, copper-zinc superoxide dismutase, polyglutamine, polylysine, and type I antifreeze protein. Changes in the secondary structure of each protein following encapsulation are monitored by circular dichroism spectroscopy. In many cases, silica confinement reduces the fraction of properly-folded protein relative to solution, but addition of a secondary solute or modification of the silica surface leads to an increase in structure. Refinement of the glass surface by addition of a monosubstituted alkoxysilane during sol-gel processing is shown to be a valuable tool for testing the effects of surface chemistry on protein structure. Because silica entrapment prevents protein aggregation by isolating individual protein molecules in the pores of the glass material, one may monitor aggregation-prone polypeptides under solvent conditions that are prohibited in solution, as demonstrated with polyglutamine and a disease-related variant of superoxide dismutase.
References
[1]
Eggers, D.K.; Valentine, J.S. Crowding and hydration effects on protein conformation: A study with sol-gel encapsulated proteins. J. Mol. Biol. 2001, 314, 911–922, doi:10.1006/jmbi.2001.5166.
[2]
Minton, A.P. The influence of macromolecular crowding and macromolecular confinement on biochemical reactions in physiological media. J. Biol. Chem. 2001, 276, 10577–10580, doi:10.1074/jbc.R100005200.
Elcock, A.H. Models of macromolecular crowding effects and the need for quantitative comparisons with experiment. Curr. Opin. Struct. Biol. 2010, 20, 196–206, doi:10.1016/j.sbi.2010.01.008.
[5]
Arnaud, C.H. Close quarters: Crowded conditions such as those in cells can affect proteins’ structure, function and activity. Chem. Eng. News 2010, 88, 9–13.
[6]
Crowley, P.B.; Chow, E.; Papkovskaia, T. Protein interactions in the Escherichia coli cytosol: An impediment to in-cell NMR spectroscopy. Chem. Bio. Chem. 2011, 12, 1043–1048.
[7]
Schlesinger, A.P.; Wang, Y.; Tadeo, X.; Millet, O.; Pielak, G.J. Macromolecular crowding fails to fold a globular protein in cells. J. Am. Chem. Soc. 2011, 133, 8082–8085.
[8]
Ellerby, L.M.; Nishida, C.R.; Nishida, F.; Yamanaka, S.A.; Dunn, B.; Valentine, J.S.; Zink, J.I. Encapsulation of proteins in transparent porous silicate glasses prepared by the sol–gel method. Science 1992, 255, 1113–1115.
Pierre, A.C. The sol-gel encapsulation of enzymes. Biocatal. Biotransform. 2004, 22, 145–170, doi:10.1080/10242420412331283314.
[11]
Avnir, D.; Coradin, T.; Lev, O.; Livage, J. Recent bio-applications of sol-gel materials. J. Mater. Chem. 2006, 16, 1013–1030, doi:10.1039/b512706h.
[12]
Gupta, R.; Chaudhury, N.K. Entrapment of biomolecules in sol-gel matrix for applications in biosensors: Problems and future prospects. Biosens. Bioelectron. 2007, 22, 2387–2399, doi:10.1016/j.bios.2006.12.025.
Zemede, G.H. Sol-Gel Glass Encapsulation of Fish Antifreeze Proteins. M.Sc. Thesis, San José State University, San José, CA, USA, 2007.
[22]
Takahashi, T.; Katada, S.; Onodera, O. Polyglutamine diseases: Where does toxicity come from? What is toxicity? Where are we going? J. Mol. Cell Biol. 2010, 2, 180–191, doi:10.1093/jmcb/mjq005.
[23]
Perutz, M.F.; Johnson, T.; Suzuki, M.; Finch, J.T. Glutamine repeats as polar zippers: Their possible role in inherited neurodegenerative diseases. Proc. Natl. Acad. Sci. USA 1994, 91, 5355–5358, doi:10.1073/pnas.91.12.5355.
[24]
Chen, S.; Berthelier, V.; Yang, W.; Wetzel, R. Polyglutamine aggregation behavior in vitro supports a recruitment mechanism of cytotoxicity. J. Mol. Biol. 2001, 311, 173–182, doi:10.1006/jmbi.2001.4850.
[25]
Altschuler, E.L.; Hud, N.V.; Mazrimas, J.A.; Rupp, B. Random coil conformation for extended polyglutamine stretches in aqueous soluble monomeric peptides. J. Peptide Res. 1997, 50, 73–75.
[26]
Rocha, V.A.; Eggers, D.K. Hydrophobic, organically-modified silica gels enhance the secondary structure of encapsulated apomyoglobin. Chem. Commun. 2007, 1266–1268.
[27]
Birtwhistle, N.J. Analysis of Sol-Gel Encapsulated Aggregate-Prone Peptides by Circular Dichroism. M.Sc. Thesis, San José State University, San José, CA, USA, 2012.
[28]
Eggers, D.K.; Valentine, J.S. Molecular confinement influences protein structure and enhances thermal protein stability. Protein Sci. 2001, 10, 250–261, doi:10.1110/ps.36201.
[29]
Menaa, B.; Herrero, M.; Rives, V.; Lavrenko, M.; Eggers, D.K. Favourable influence of hydrophobic surfaces on protein structure in porous organically-modified silica glasses. Biomaterials 2008, 29, 2710–2718, doi:10.1016/j.biomaterials.2008.02.026.
[30]
Greenfield, N.; Fasman, G.D. Computed circular dichroism spectra for the evaluation of protein conformation. Biochemistry 1969, 8, 4108–4116, doi:10.1021/bi00838a031.
[31]
Bello, J. Helix formation in poly(N,N,N-trimethyl-L-lysine) and poly(L-lysine): Dependence on concentration and molecular weight. Biopolymers 1992, 32, 185–188, doi:10.1002/bip.360320208.
[32]
Hapner, K.D.; Bradshaw, R.A.; Hartzell, C.R.; Gurd, F.R.N. Comparison of myoglobins from harbor seal, porpoise, and sperm whale. J. Biol. Chem. 1968, 243, 683–689.
[33]
Chen, S.; Wetzel, R. Solubilization and disaggregation of polyglutamine peptides. Protein Sci. 2001, 10, 887–891, doi:10.1110/ps.42301.