[1] | Kirchhoff F (2010) Immune evasion and counteraction of restriction factors by HIV-1 and other primate lentiviruses. Cell Host Microbe 8: 55–67.
|
[2] | van Maanen M, Sutton RE (2003) Rodent models for HIV-1 infection and disease. Curr HIV Res 1: 121–130.
|
[3] | Clayton LK, Hussey RE, Steinbrich R, Ramachandran H, Husain Y, et al. (1988) Substitution of murine for human CD4 residues identifies amino acids critical for HIV-gp120 binding. Nature 335: 363–366.
|
[4] | Landau NR, Warton M, Littman DR (1988) The envelope glycoprotein of the human immunodeficiency virus binds to the immunoglobulin-like domain of CD4. Nature 334: 159–162.
|
[5] | Feng Y, Broder CC, Kennedy PE, Berger EA (1996) HIV-1 entry cofactor: functional cDNA cloning of a seven-transmembrane, G protein-coupled receptor. Science 272: 872–877.
|
[6] | Garber ME, Wei P, KewalRamani VN, Mayall TP, Herrmann CH, et al. (1998) The interaction between HIV-1 Tat and human cyclin T1 requires zinc and a critical cysteine residue that is not conserved in the murine CycT1 protein. Genes Dev 12: 3512–3527.
|
[7] | Wei P, Garber ME, Fang SM, Fischer WH, Jones KA (1998) A novel CDK9-associated C-type cyclin interacts directly with HIV-1 Tat and mediates its high-affinity, loop-specific binding to TAR RNA. Cell 92: 451–462.
|
[8] | Bieniasz PD, Cullen BR (2000) Multiple blocks to human immunodeficiency virus type 1 replication in rodent cells. J Virol 74: 9868–9877.
|
[9] | Mariani R, Rutter G, Harris ME, Hope TJ, Krausslich HG, et al. (2000) A block to human immunodeficiency virus type 1 assembly in murine cells. J Virol 74: 3859–3870.
|
[10] | Zhang JX, Diehl GE, Littman DR (2008) Relief of preintegration inhibition and characterization of additional blocks for HIV replication in primary mouse T cells. PLoS One 3: e2035.
|
[11] | Swanson CM, Malim MH (2006) Retrovirus RNA trafficking: from chromatin to invasive genomes. Traffic 7: 1440–1450.
|
[12] | Cullen BR (2003) Nuclear mRNA export: insights from virology. Trends Biochem Sci 28: 419–424.
|
[13] | Pollard VW, Malim MH (1998) The HIV-1 Rev protein. Annu Rev Microbiol 52: 491–532.
|
[14] | Hutten S, Kehlenbach RH (2007) CRM1-mediated nuclear export: to the pore and beyond. Trends Cell Biol 17: 193–201.
|
[15] | Chen BK, Rousso I, Shim S, Kim PS (2001) Efficient assembly of an HIV-1/MLV Gag-chimeric virus in murine cells. Proc Natl Acad Sci U S A 98: 15239–15244.
|
[16] | Reed M, Mariani R, Sheppard L, Pekrun K, Landau NR, et al. (2002) Chimeric human immunodeficiency virus type 1 containing murine leukemia virus matrix assembles in murine cells. J Virol 76: 436–443.
|
[17] | Trono D, Baltimore D (1990) A human cell factor is essential for HIV-1 Rev action. EMBO J 9: 4155–4160.
|
[18] | Sherer NM, Swanson CM, Papaioannou S, Malim MH (2009) Matrix mediates the functional link between human immunodeficiency virus type 1 RNA nuclear export elements and the assembly competency of Gag in murine cells. J Virol 83: 8525–8535.
|
[19] | Swanson CM, Puffer BA, Ahmad KM, Doms RW, Malim MH (2004) Retroviral mRNA nuclear export elements regulate protein function and virion assembly. EMBO J 23: 2632–2640.
|
[20] | Hatziioannou T, Martin-Serrano J, Zang T, Bieniasz PD (2005) Matrix-induced inhibition of membrane binding contributes to human immunodeficiency virus type 1 particle assembly defects in murine cells. J Virol 79: 15586–15589.
|
[21] | Jin J, Sturgeon T, Chen C, Watkins SC, Weisz OA, et al. (2007) Distinct intracellular trafficking of equine infectious anemia virus and human immunodeficiency virus type 1 Gag during viral assembly and budding revealed by bimolecular fluorescence complementation assays. J Virol 81: 11226–11235.
|
[22] | Bray M, Prasad S, Dubay JW, Hunter E, Jeang KT, et al. (1994) A small element from the Mason-Pfizer monkey virus genome makes human immunodeficiency virus type 1 expression and replication Rev-independent. Proc Natl Acad Sci U S A 91: 1256–1260.
|
[23] | Coskun AK, van Maanen M, Nguyen V, Sutton RE (2006) Human chromosome 2 carries a gene required for production of infectious human immunodeficiency virus type 1. J Virol 80: 3406–3415.
|
[24] | Nagai-Fukataki M, Ohashi T, Hashimoto I, Kimura T, Hakata Y, et al. (2011) Nuclear and cytoplasmic effects of human CRM1 on HIV-1 production in rat cells. Genes Cells 16: 203–216.
|
[25] | Okada H, Zhang X, Ben Fofana I, Nagai M, Suzuki H, et al. (2009) Synergistic effect of human CycT1 and CRM1 on HIV-1 propagation in rat T cells and macrophages. Retrovirology 6: 43.
|
[26] | Swanson CM, Sherer NM, Malim MH (2010) SRp40 and SRp55 promote the translation of unspliced human immunodeficiency virus type 1 RNA. J Virol 84: 6748–6759.
|
[27] | Bieniasz PD, Grdina TA, Bogerd HP, Cullen BR (1998) Recruitment of a protein complex containing Tat and cyclin T1 to TAR governs the species specificity of HIV-1 Tat. EMBO J 17: 7056–7065.
|
[28] | Malim MH, McCarn DF, Tiley LS, Cullen BR (1991) Mutational definition of the human immunodeficiency virus type 1 Rev activation domain. Journal of virology 65: 4248–4254.
|
[29] | Winslow BJ, Trono D (1993) The blocks to human immunodeficiency virus type 1 Tat and Rev functions in mouse cell lines are independent. J Virol 67: 2349–2354.
|
[30] | Adamson CS, Freed EO (2007) Human immunodeficiency virus type 1 assembly, release, and maturation. Adv Pharmacol 55: 347–387.
|
[31] | Saad JS, Miller J, Tai J, Kim A, Ghanam RH, et al. (2006) Structural basis for targeting HIV-1 Gag proteins to the plasma membrane for virus assembly. Proc Natl Acad Sci U S A 103: 11364–11369.
|
[32] | Tang C, Loeliger E, Luncsford P, Kinde I, Beckett D, et al. (2004) Entropic switch regulates myristate exposure in the HIV-1 matrix protein. Proc Natl Acad Sci U S A 101: 517–522.
|
[33] | Paillart JC, Gottlinger HG (1999) Opposing effects of human immunodeficiency virus type 1 matrix mutations support a myristyl switch model of gag membrane targeting. J Virol 73: 2604–2612.
|
[34] | Perez-Caballero D, Hatziioannou T, Martin-Serrano J, Bieniasz PD (2004) Human immunodeficiency virus type 1 matrix inhibits and confers cooperativity on gag precursor-membrane interactions. J Virol 78: 9560–9563.
|
[35] | Dong X, Biswas A, Suel KE, Jackson LK, Martinez R, et al. (2009) Structural basis for leucine-rich nuclear export signal recognition by CRM1. Nature 458: 1136–1141.
|
[36] | Monecke T, Guttler T, Neumann P, Dickmanns A, Gorlich D, et al. (2009) Crystal structure of the nuclear export receptor CRM1 in complex with Snurportin1 and RanGTP. Science 324: 1087–1091.
|
[37] | Guttler T, Madl T, Neumann P, Deichsel D, Corsini L, et al. (2010) NES consensus redefined by structures of PKI-type and Rev-type nuclear export signals bound to CRM1. Nat Struct Mol Biol 17: 1367–1376.
|
[38] | Koyama M, Matsuura Y (2010) An allosteric mechanism to displace nuclear export cargo from CRM1 and RanGTP by RanBP1. EMBO J 29: 2002–2013.
|
[39] | Perelman P, Johnson WE, Roos C, Seuanez HN, Horvath JE, et al. (2011) A molecular phylogeny of living primates. PLoS Genet 7: e1001342.
|
[40] | Gupta RK, Hue S, Schaller T, Verschoor E, Pillay D, et al. (2009) Mutation of a single residue renders human tetherin resistant to HIV-1 Vpu-mediated depletion. PLoS Pathog 5: e1000443.
|
[41] | McNatt MW, Zang T, Hatziioannou T, Bartlett M, Fofana IB, et al. (2009) Species-specific activity of HIV-1 Vpu and positive selection of tetherin transmembrane domain variants. PLoS Pathog 5: e1000300.
|
[42] | Sawyer SL, Emerman M, Malik HS (2004) Ancient adaptive evolution of the primate antiviral DNA-editing enzyme APOBEC3G. PLoS Biol 2: E275.
|
[43] | Sawyer SL, Wu LI, Emerman M, Malik HS (2005) Positive selection of primate TRIM5alpha identifies a critical species-specific retroviral restriction domain. Proc Natl Acad Sci U S A 102: 2832–2837.
|
[44] | Hurst LD (2002) The Ka/Ks ratio: diagnosing the form of sequence evolution. Trends Genet 18: 486.
|
[45] | Paraskeva E, Izaurralde E, Bischoff FR, Huber J, Kutay U, et al. (1999) CRM1-mediated recycling of snurportin 1 to the cytoplasm. J Cell Biol 145: 255–264.
|
[46] | Askjaer P, Jensen TH, Nilsson J, Englmeier L, Kjems J (1998) The specificity of the CRM1-Rev nuclear export signal interaction is mediated by RanGTP. J Biol Chem 273: 33414–33422.
|
[47] | Hakata Y, Yamada M, Shida H (2003) A multifunctional domain in human CRM1 (exportin 1) mediates RanBP3 binding and multimerization of human T-cell leukemia virus type 1 Rex protein. Mol Cell Biol 23: 8751–8761.
|
[48] | Nemergut ME, Lindsay ME, Brownawell AM, Macara IG (2002) Ran-binding protein 3 links Crm1 to the Ran guanine nucleotide exchange factor. J Biol Chem 277: 17385–17388.
|
[49] | Englmeier L, Fornerod M, Bischoff FR, Petosa C, Mattaj IW, et al. (2001) RanBP3 influences interactions between CRM1 and its nuclear protein export substrates. EMBO reports 2: 926–932.
|
[50] | Lindsay ME, Holaska JM, Welch K, Paschal BM, Macara IG (2001) Ran-binding protein 3 is a cofactor for Crm1-mediated nuclear protein export. J Cell Biol 153: 1391–1402.
|
[51] | Mertz JA, Simper MS, Lozano MM, Payne SM, Dudley JP (2005) Mouse mammary tumor virus encodes a self-regulatory RNA export protein and is a complex retrovirus. J Virol 79: 14737–14747.
|
[52] | Indik S, Gunzburg WH, Salmons B, Rouault F (2005) A novel, mouse mammary tumor virus encoded protein with Rev-like properties. Virology 337: 1–6.
|
[53] | Tiley LS, Madore SJ, Malim MH, Cullen BR (1992) The VP16 transcription activation domain is functional when targeted to a promoter-proximal RNA sequence. Genes Dev 6: 2077–2087.
|
[54] | Wodrich H, Schambach A, Krausslich HG (2000) Multiple copies of the Mason-Pfizer monkey virus constitutive RNA transport element lead to enhanced HIV-1 Gag expression in a context-dependent manner. Nucleic Acids Res 28: 901–910.
|
[55] | Yi R, Bogerd HP, Cullen BR (2002) Recruitment of the Crm1 nuclear export factor is sufficient to induce cytoplasmic expression of incompletely spliced human immunodeficiency virus mRNAs. J Virol 76: 2036–2042.
|
[56] | Sheehy AM, Gaddis NC, Choi JD, Malim MH (2002) Isolation of a human gene that inhibits HIV-1 infection and is suppressed by the viral Vif protein. Nature 418: 646–650.
|
[57] | Platt EJ, Wehrly K, Kuhmann SE, Chesebro B, Kabat D (1998) Effects of CCR5 and CD4 cell surface concentrations on infections by macrophagetropic isolates of human immunodeficiency virus type 1. J Virol 72: 2855–2864.
|
[58] | Gaddis NC, Chertova E, Sheehy AM, Henderson LE, Malim MH (2003) Comprehensive investigation of the molecular defect in vif-deficient human immunodeficiency virus type 1 virions. J Virol 77: 5810–5820.
|
[59] | Evan GI, Lewis GK, Ramsay G, Bishop JM (1985) Isolation of monoclonal antibodies specific for human c-myc proto-oncogene product. Mol Cell Biol 5: 3610–3616.
|
[60] | Dutheil N, Henckaerts E, Kohlbrenner E, Linden RM (2009) Transcriptional analysis of the adeno-associated virus integration site. J Virol 83: 12512–12525.
|
[61] | Price MN, Dehal PS, Arkin AP (2009) FastTree: computing large minimum evolution trees with profiles instead of a distance matrix. Mol Biol Evol 26: 1641–1650.
|
[62] | Yang Z (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. CABIOS 13: 555–556.
|
[63] | Wang D, Zhang Y, Zhang Z, Zhu J, Yu J (2010) KaKs_Calculator 2.0: a toolkit incorporating gamma-series methods and sliding window strategies. Genomics Proteomics Bioinformatics 8: 77–80.
|
[64] | Pond SL, Frost SD, Muse SV (2005) HyPhy: hypothesis testing using phylogenies. Bioinformatics 21: 676–679.
|
[65] | Zhang J, Nielsen R, Yang Z (2005) Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level. Mol Biol Evol 22: 2472–2479.
|
[66] | Daugherty MD, Liu B, Frankel AD (2010) Structural basis for cooperative RNA binding and export complex assembly by HIV Rev. Nat Struct Mol Biol 17: 1337–1342.
|
[67] | Gruter P, Tabernero C, von Kobbe C, Schmitt C, Saavedra C, et al. (1998) TAP, the human homolog of Mex67p, mediates CTE-dependent RNA export from the nucleus. Mol Cell 1: 649–659.
|