| [1] | Noueiry AO, Ahlquist P (2003) Brome Mosaic Virus RNA Replication: Revealing the Role of the Host in RNA Virus Replication. Annu Rev Phytopathol 41: 77–98.
|
| [2] | Nagy PD (2008) Yeast as a model host to explore plant virus-host interactions. Annu Rev Phytopathol 46: 217–242.
|
| [3] | Strauss JH, Strauss EG (1999) Viral RNA replication. With a little help from the host. Science 283: 802–804.
|
| [4] | Wang RY, Nagy PD (2008) Tomato bushy stunt virus Co-Opts the RNA-Binding Function of a Host Metabolic Enzyme for Viral Genomic RNA Synthesis. Cell Host Microbe 3: 178–187.
|
| [5] | Li Z, Nagy PD (2011) Diverse roles of host RNA binding proteins in RNA virus replication. RNA Biol 8: 305–315.
|
| [6] | Nagy PD, Pogany J (2006) Yeast as a model host to dissect functions of viral and host factors in tombusvirus replication. Virology 344: 211–220.
|
| [7] | Brinton MA (2001) Host factors involved in West Nile virus replication. Ann N Y Acad Sci 951: 207–219.
|
| [8] | Shi ST, Lai MM (2005) Viral and cellular proteins involved in coronavirus replication. Curr Top Microbiol Immunol 287: 95–131.
|
| [9] | Panavas T, Nagy PD (2003) Yeast as a model host to study replication and recombination of defective interfering RNA of Tomato bushy stunt virus. Virology 314: 315–325.
|
| [10] | Panaviene Z, Panavas T, Serva S, Nagy PD (2004) Purification of the cucumber necrosis virus replicase from yeast cells: role of coexpressed viral RNA in stimulation of replicase activity. J Virol 78: 8254–8263.
|
| [11] | Panaviene Z, Panavas T, Nagy PD (2005) Role of an internal and two 3′-terminal RNA elements in assembly of tombusvirus replicase. J Virol 79: 10608–10618.
|
| [12] | Pogany J, White KA, Nagy PD (2005) Specific Binding of Tombusvirus Replication Protein p33 to an Internal Replication Element in the Viral RNA Is Essential for Replication. J Virol 79: 4859–4869.
|
| [13] | Nagy PD, Pogany J (2008) Multiple roles of viral replication proteins in plant RNA virus replication. Methods Mol Biol 451: 55–68.
|
| [14] | Kushner DB, Lindenbach BD, Grdzelishvili VZ, Noueiry AO, Paul SM, et al. (2003) Systematic, genome-wide identification of host genes affecting replication of a positive-strand RNA virus. Proc Natl Acad Sci U S A 100: 15764–15769.
|
| [15] | Panavas T, Serviene E, Brasher J, Nagy PD (2005) Yeast genome-wide screen reveals dissimilar sets of host genes affecting replication of RNA viruses. Proc Natl Acad Sci U S A 102: 7326–7331.
|
| [16] | Jiang Y, Serviene E, Gal J, Panavas T, Nagy PD (2006) Identification of essential host factors affecting tombusvirus RNA replication based on the yeast Tet promoters Hughes Collection. J Virol 80: 7394–7404.
|
| [17] | Nagy PD, Pogany J (2010) Global genomics and proteomics approaches to identify host factors as targets to induce resistance against tomato bushy stunt virus. Adv Virus Res 76: 123–177.
|
| [18] | Wang RY, Stork J, Pogany J, Nagy PD (2009) A temperature sensitive mutant of heat shock protein 70 reveals an essential role during the early steps of tombusvirus replication. Virology 394: 28–38.
|
| [19] | Wang RY, Stork J, Nagy PD (2009) A key role for heat shock protein 70 in the localization and insertion of tombusvirus replication proteins to intracellular membranes. J Virol 83: 3276–3287.
|
| [20] | Pogany J, Stork J, Li Z, Nagy PD (2008) In vitro assembly of the Tomato bushy stunt virus replicase requires the host Heat shock protein 70. Proc Natl Acad Sci U S A 105: 19956–19961.
|
| [21] | Serva S, Nagy PD (2006) Proteomics analysis of the tombusvirus replicase: Hsp70 molecular chaperone is associated with the replicase and enhances viral RNA replication. J Virol 80: 2162–2169.
|
| [22] | Li Z, Barajas D, Panavas T, Herbst DA, Nagy PD (2008) Cdc34p Ubiquitin-Conjugating Enzyme Is a Component of the Tombusvirus Replicase Complex and Ubiquitinates p33 Replication Protein. J Virol 82: 6911–6926.
|
| [23] | Li Z, Pogany J, Tupman S, Esposito AM, Kinzy TG, et al. (2010) Translation Elongation Factor 1A Facilitates the Assembly of the Tombusvirus Replicase and Stimulates Minus-Strand Synthesis. PLoS Pathog 6: e1001175.
|
| [24] | Li Z, Pogany J, Panavas T, Xu K, Esposito AM, et al. (2009) Translation elongation factor 1A is a component of the tombusvirus replicase complex and affects the stability of the p33 replication co-factor. Virology 385: 245–260.
|
| [25] | Pathak KB, Sasvari Z, Nagy PD (2008) The host Pex19p plays a role in peroxisomal localization of tombusvirus replication proteins. Virology 379: 294–305.
|
| [26] | Barajas D, Nagy PD (2010) Ubiquitination of tombusvirus p33 replication protein plays a role in virus replication and binding to the host Vps23p ESCRT protein. Virology 397: 358–368.
|
| [27] | Barajas D, Jiang Y, Nagy PD (2009) A Unique Role for the Host ESCRT Proteins in Replication of Tomato bushy stunt virus. PLoS Pathog 5: e1000705.
|
| [28] | Mateyak MK, Kinzy TG (2010) eEF1A: thinking outside the ribosome. J Biol Chem 285: 21209–21213.
|
| [29] | Esposito AM, Kinzy TG (2010) The eukaryotic translation elongation Factor 1Bgamma has a non-guanine nucleotide exchange factor role in protein metabolism. J Biol Chem 285: 37995–38004.
|
| [30] | Olarewaju O, Ortiz PA, Chowdhury WQ, Chatterjee I, Kinzy TG (2004) The translation elongation factor eEF1B plays a role in the oxidative stress response pathway. RNA Biol 1: 89–94.
|
| [31] | Das T, Mathur M, Gupta AK, Janssen GM, Banerjee AK (1998) RNA polymerase of vesicular stomatitis virus specifically associates with translation elongation factor-1 alphabetagamma for its activity. Proc Natl Acad Sci U S A 95: 1449–1454.
|
| [32] | Le Sourd F, Boulben S, Le Bouffant R, Cormier P, Morales J, et al. (2006) eEF1B: At the dawn of the 21st century. Biochim Biophys Acta 1759: 13–31.
|
| [33] | Kinzy TG, Ripmaster TL, Woolford JL Jr (1994) Multiple genes encode the translation elongation factor EF-1 gamma in Saccharomyces cerevisiae. Nucleic Acids Res 22: 2703–2707.
|
| [34] | Pogany J, Nagy PD (2008) Authentic replication and recombination of Tomato bushy stunt virus RNA in a cell-free extract from yeast. J Virol 82: 5967–5980.
|
| [35] | Cheng CP, Panavas T, Luo G, Nagy PD (2005) Heterologous RNA replication enhancer stimulates in vitro RNA synthesis and template-switching by the carmovirus, but not by the tombusvirus, RNA-dependent RNA polymerase: implication for modular evolution of RNA viruses. Virology 341: 107–121.
|
| [36] | Rajendran KS, Pogany J, Nagy PD (2002) Comparison of turnip crinkle virus RNA-dependent RNA polymerase preparations expressed in Escherichia coli or derived from infected plants. J Virol 76: 1707–1717.
|
| [37] | Cheng CP, Nagy PD (2003) Mechanism of RNA recombination in carmo- and tombusviruses: evidence for template switching by the RNA-dependent RNA polymerase in vitro. J Virol 77: 12033–12047.
|
| [38] | Nagy PD, Pogany J (2000) Partial purification and characterization of Cucumber necrosis virus and Tomato bushy stunt virus RNA-dependent RNA polymerases: similarities and differences in template usage between tombusvirus and carmovirus RNA-dependent RNA polymerases. Virology 276: 279–288.
|
| [39] | Pogany J, Fabian MR, White KA, Nagy PD (2003) A replication silencer element in a plus-strand RNA virus. Embo J 22: 5602–5611.
|
| [40] | Pathak KB, Nagy PD (2009) Defective Interfering RNAs: Foes of Viruses and Friends of Virologists. Viruses-Basel 1: 895–919.
|
| [41] | White KA, Nagy PD (2004) Advances in the molecular biology of tombusviruses: gene expression, genome replication, and recombination. Prog Nucleic Acid Res Mol Biol 78: 187–226.
|
| [42] | Jonczyk M, Pathak KB, Sharma M, Nagy PD (2007) Exploiting alternative subcellular location for replication: tombusvirus replication switches to the endoplasmic reticulum in the absence of peroxisomes. Virology 362: 320–330.
|
| [43] | Panavas T, Hawkins CM, Panaviene Z, Nagy PD (2005) The role of the p33:p33/p92 interaction domain in RNA replication and intracellular localization of p33 and p92 proteins of Cucumber necrosis tombusvirus. Virology 338: 81–95.
|
| [44] | Johnson CM, Perez DR, French R, Merrick WC, Donis RO (2001) The NS5A protein of bovine viral diarrhoea virus interacts with the alpha subunit of translation elongation factor-1. J Gen Virol 82: 2935–2943.
|
| [45] | Qanungo KR, Shaji D, Mathur M, Banerjee AK (2004) Two RNA polymerase complexes from vesicular stomatitis virus-infected cells that carry out transcription and replication of genome RNA. Proc Natl Acad Sci U S A 101: 5952–5957.
|
| [46] | Yamaji Y, Sakurai K, Hamada K, Komatsu K, Ozeki J, et al. (2010) Significance of eukaryotic translation elongation factor 1A in tobacco mosaic virus infection. Arch Virol 155: 263–268.
|
| [47] | Gavin AC, Bosche M, Krause R, Grandi P, Marzioch M, et al. (2002) Functional organization of the yeast proteome by systematic analysis of protein complexes. Nature 415: 141–147.
|
| [48] | Gavin AC, Aloy P, Grandi P, Krause R, Boesche M, et al. (2006) Proteome survey reveals modularity of the yeast cell machinery. Nature 440: 631–636.
|
| [49] | Collins SR, Kemmeren P, Zhao XC, Greenblatt JF, Spencer F, et al. (2007) Toward a comprehensive atlas of the physical interactome of Saccharomyces cerevisiae. Mol Cell Proteomics 6: 439–450.
|
| [50] | Panavas T, Pogany J, Nagy PD (2002) Analysis of minimal promoter sequences for plus-strand synthesis by the Cucumber necrosis virus RNA-dependent RNA polymerase. Virology 296: 263–274.
|
| [51] | Al-Maghrebi M, Brule H, Padkina M, Allen C, Holmes WM, et al. (2002) The 3′ untranslated region of human vimentin mRNA interacts with protein complexes containing eEF-1gamma and HAX-1. Nucleic Acids Res 30: 5017–5028.
|
| [52] | Blumenthal T, Young RA, Brown S (1976) Function and structure in phage Qbeta RNA replicase. Association of EF-Tu-Ts with the other enzyme subunits. J Biol Chem 251: 2740–2743.
|
| [53] | Blumenthal T, Landers TA, Weber K (1972) Bacteriophage Q replicase contains the protein biosynthesis elongation factors EF Tu and EF Ts. Proc Natl Acad Sci U S A 69: 1313–1317.
|
| [54] | Dreher TW (1999) Functions of the 3′-Untranslated Regions of Positive Strand Rna Viral Genomes. Annu Rev Phytopathol 37: 151–174.
|
| [55] | Thivierge K, Cotton S, Dufresne PJ, Mathieu I, Beauchemin C, et al. (2008) Eukaryotic elongation factor 1A interacts with Turnip mosaic virus RNA-dependent RNA polymerase and VPg-Pro in virus-induced vesicles. Virology 377: 216–225.
|
| [56] | Nishikiori M, Dohi K, Mori M, Meshi T, Naito S, et al. (2006) Membrane-bound tomato mosaic virus replication proteins participate in RNA synthesis and are associated with host proteins in a pattern distinct from those that are not membrane bound. J Virol 80: 8459–8468.
|
| [57] | Zeenko VV, Ryabova LA, Spirin AS, Rothnie HM, Hess D, et al. (2002) Eukaryotic elongation factor 1A interacts with the upstream pseudoknot domain in the 3′ untranslated region of tobacco mosaic virus RNA. J Virol 76: 5678–5691.
|
| [58] | De Nova-Ocampo M, Villegas-Sepulveda N, del Angel RM (2002) Translation elongation factor-1alpha, La, and PTB interact with the 3′ untranslated region of dengue 4 virus RNA. Virology 295: 337–347.
|
| [59] | Bastin M, Hall TC (1976) Interaction of elongation factor 1 with aminoacylated brome mosaic virus and tRNA's. J Virol 20: 117–122.
|
| [60] | Sikora D, Greco-Stewart VS, Miron P, Pelchat M (2009) The hepatitis delta virus RNA genome interacts with eEF1A1, p54(nrb), hnRNP-L, GAPDH and ASF/SF2. Virology 390: 71–78.
|
| [61] | Dube A, Bisaillon M, Perreault JP (2009) Identification of proteins from prunus persica that interact with peach latent mosaic viroid. J Virol 83: 12057–12067.
|
| [62] | Jeppesen MG, Ortiz P, Shepard W, Kinzy TG, Nyborg J, et al. (2003) The crystal structure of the glutathione S-transferase-like domain of elongation factor 1Bgamma from Saccharomyces cerevisiae. J Biol Chem 278: 47190–47198.
|
| [63] | Nagy PD, Carpenter CD, Simon AE (1997) A novel 3′-end repair mechanism in an RNA virus. Proc Natl Acad Sci U S A 94: 1113–1118.
|
| [64] | Zhang Y, Nijbroek G, Sullivan ML, McCracken AA, Watkins SC, et al. (2001) Hsp70 molecular chaperone facilitates endoplasmic reticulum-associated protein degradation of cystic fibrosis transmembrane conductance regulator in yeast. Mol Biol Cell 12: 1303–1314.
|
| [65] | Jaag HM, Nagy PD (2009) Silencing of Nicotiana benthamiana Xrn4p exoribonuclease promotes tombusvirus RNA accumulation and recombination. Virology 386: 344–352.
|
| [66] | Jaag HM, Pogany J, Nagy PD (2010) A host Ca2+/Mn2+ ion pump is a factor in the emergence of viral RNA recombinants. Cell Host Microbe 7: 74–81.
|
