Background Although it is a crucial cellular process required for both normal development and to face stress conditions, the control of programmed cell death in plants is not fully understood. We previously reported the isolation of ATXR5 and ATXR6, two PCNA-binding proteins that could be involved in the regulation of cell cycle or cell death. A yeast two-hybrid screen using ATXR5 as bait captured AtIPS1, an enzyme which catalyses the committed step of myo-inositol (MI) biosynthesis. atips1 mutants form spontaneous lesions on leaves, raising the possibility that MI metabolism may play a role in the control of PCD in plants. In this work, we have characterised atips1 mutants to gain insight regarding the role of MI in PCD regulation. Methodology/Principal Findings - lesion formation in atips1 mutants depends of light intensity, is due to PCD as evidenced by TUNEL labelling of nuclei, and is regulated by phytohormones such as salicylic acid - MI and galactinol are the only metabolites whose accumulation is significantly reduced in the mutant, and supplementation of the mutant with these compounds is sufficient to prevent PCD - the transcriptome profile of the mutant is extremely similar to that of lesion mimic mutants such as cpr5, or wild-type plants infected with pathogens. Conclusion/Significance Taken together, our results provide strong evidence for the role of MI or MI derivatives in the regulation of PCD. Interestingly, there are three isoforms of IPS in Arabidopsis, but AtIPS1 is the only one harbouring a nuclear localisation sequence, suggesting that nuclear pools of MI may play a specific role in PCD regulation and opening new research prospects regarding the role of MI in the prevention of tumorigenesis. Nevertheless, the significance of the interaction between AtIPS1 and ATXR5 remains to be established.
References
[1]
Williams B, Dickman M (2008) Plant programmed cell death: can't live with it; can't live without it. Mol Plant Pathol 9: 531–544.
[2]
Morel JB, Dangl JL (1997) The hypersensitive response and the induction of cell death in plants. Cell Death Differ 4: 671–83.
[3]
Reape TJ, McCabe PF (2008) Apoptotic-like programmed cell death in plants. New Phytol 180: 13–26.
[4]
Overmyer K, Brosché M, Kangasjarvi J (2003) Reactive oxygen species and hormonal control of cell death. Trends Plant Sci 8: 335–342.
[5]
Lorrain S, Vailleau F, Balague C, Roby D (2003) Lesion mimic mutants: keys for deciphering cell death and defense pathways in plants? Trends Plant Sci 8: 263–271.
[6]
Maga G, Hübscher U (2003) Proliferating cell nuclear antigen (PCNA): a dancer with many partners. J Cell Sci 116: 3051–3060.
[7]
Raynaud C, Sozzani R, Glab N, Domenichini S, Perennes C, et al. (2006) Two cell-cycle regulated SET-domain proteins interact with proliferating cell nuclear antigen (PCNA) in Arabidopsis. Plant J 47: 395–407.
[8]
Jacob Y, Feng S, Leblanc CA, Bernatavichute YV, Stroud H, et al. (2009) ATXR5 and ATXR6 are H3K27 monomethyltransferases required for chromatin structure and gene silencing. Nat Struct Mol Biol 16: 763–768.
[9]
Loewus FA, Loewus MW (1983) Myo-inositol: its biosynthesis and metabolism. Annu Rev Plant Physiol 34: 137–161.
Bohnert HJ, Nelson DE, Jensen RG (1995) Adaptations to environmental stresses. Plant Cell 7: 1099–1111.
[12]
Ishitani M, Majumder A, Bornhouser A, Michalowski C, Jensen RG, et al. (1996) Coordinate transcriptional induction of myo-inositol metabolism during environmental stress. Plant J 9: 537–548.
[13]
Smart CC, Flemming AJ (1993) A plant gene with homology to D-myo-inositol-3-phosphate synthase is rapidly and spatially up-regulated during an abscisic-acid-induced morphogenic response in Spirodela polyrrhiza. Plant J 4: 279–293.
[14]
Smart CC, Flores S (1997) Overexpression of D-myo-inositol-3-phosphate synthase leads to elevated levels of inositol in Arabidopsis. Plant Mol Biol 33: 811–820.
[15]
Raboy V (2003) myo-Inositol-1,2,3,4,5,6-hexakisphosphat?e. Phytochemistry 64: 1033–1043.
[16]
Raboy V, Gerbasi PF, Young KA, Stoneberg SD, Pickett SG, et al. (2000) Origin and seed phenotype of maize low phytic acid 1-1 and low phytic acid 2-1. Plant Physiol 124: 355–368.
[17]
Nunes AC, Vianna GR, Cuneo F, Amaya-farfa J, de Capdeville G, et al. (2006) RNAi-mediated silencing of the myo-inositol-1-phosphate synthase gene (GmMIPS1) in transgenic soybean inhibited seed development and reduced phytate content. Planta 224: 125–132.
[18]
Keller R, Brearley CA, Trethewey RN, Müller-R?ber B (1998) Reduced inositol content and altered morphology in transgenic potato plants inhibited for 1D-myo-inositol-3-phosphate synthase. Plant J 16: 403–410.
[19]
Johnson M, Sussex I (1995) 1 L-myo-Inositol 1-Phosphate Synthase from Arabidopsis thaliana. Plant Physiol 107: 613–619.
[20]
Murphy AM, Otto B, Brearley CA, Carr JP, Hanke DE (2008) A role for inositol hexakisphosphate in the maintenance of basal resistance to plant pathogens. Plant J 56: 638–652.
[21]
Fromont-Racine M, Rain J, Legrain P (1997) Toward a functional analysis of the yeast genome through exhaustive two-hybrid screens. Nat Genet 16: 277–282.
[22]
Gendreau E, Traas J, Desnos T, Grandjean O, Caboche M, et al. (1997) Cellular basis of hypocotyl growth in Arabidopsis thaliana. Plant Physiol 114: 295–305.
[23]
Huq E, Tepperman JM, Quail PH (2000) GIGANTEA is a nuclear protein involved in phytochrome signaling in Arabidopsis. Proc Natl Acad Sci USA 97: 9789–94.
[24]
Park DH, Somers DE, Kim YS, Choy YH, Lim HK, et al. (1999) Control of circadian rhythms and photoperiodic flowering by the Arabidopsis GIGANTEA Gene. Science 285: 1579–1582.
[25]
Fowler S, Karen L, Onouchi H, Samach A, Richardson K, et al. (1999) GIGANTEA: a circadian clock-controlled gene that regulates photoperiodic flowering in Arabidopsis and encodes a protein with several possible membrane-spanning domains. EMBO J 18: 4679–4688.
[26]
Lawton K, Weymann K, Friedrich L, Vernooij B, Uknes S, et al. (1995) Systemic acquired resistance in Arabidopsis requires salicylic acid but not ethylene. Mol Plant Microbe Interact 8: 863–870.
[27]
van Wees SC, Glazebrook J (2003) Loss of non-host resistance of Arabidopsis NahG to Pseudomonas syringae pv. phaseolicola is due to degradation products of salicylic acid. Plant J 33: 733–742.
[28]
Nawrath C, Métraux J (1999) Salicylic acid Induction–Deficient mutants of Arabidopsis express PR-2 and PR-5 and accumulate high levels of camalexin after pathogen inoculation. Plant Cell 11: 1393–1404.
[29]
Wildemuth MC, Dewdney J, Wu G, Ausubel FM (2001) Isochorismate synthase is required to synthetize salicylic acid for plant defense. Nature 414: 562–565.
[30]
Love AJ, Milner JJ, Sadanandom A (2008) Timing is everything: regulatory overlap in plant cell death. Trends Plant Sci 13: 589–595.
[31]
Park J, Halitschke R, Kim HB, Baldwin IT, Feldmann KA, et al. (2002) A knock-out mutation in allene oxide synthase results in male sterility and defective wound signal transduction in Arabidopsis due to a block in jasmonic acid biosynthesis. Plant J 31: 1–12.
[32]
Noctor G, Bergot G, Mauve C, Thominet D, Lelarge-Trouverie C, et al. (2007) A comparative study of amino acid measurement in leaf extracts by gas chromatography-time of flight-mass spectrometry and high performance liquid chromatography with fluorescence detection. Metabolomics 3: 161–174.
[33]
Nishizawa A, Yabuta Y, Shigeoka S (2008) Galactinol and raffinose constitute a novel function to protect plants from oxidative damage. Plant Physiol 147: 1251–1263.
[34]
Zimmermann P, Hirsch-hoffmann M, Hennig L, Gruissem W (2004) GENEVESTIGATOR. Arabidopsis microarray database and analysis toolbox. Plant Physiol 136: 2621–2632.
[35]
Bomblies K, Lempe J, Epple P, Warthmann N, Lanz C, et al. (2007) Autoimmune response as a mechanism for a Dobzhansky-Muller-type incompatibility syndrome in plants. PLoS Biol 5: 1962–1972.
[36]
Bowling SA, Clarke JD, Liu Y, Klessig DF, Dongag X (1997) The cpr5 mutant of Arabidopsis expresses both NPR1-dependent and NPR1-independent resistance. Plant Cell 9: 1573–1584.
[37]
Qiu J, Zhou L, Yun B, Nielsen HB, Fiil BK, et al. (2008) Arabidopsis mitogen-activated protein kinase kinases MKK1 and MKK2 have overlapping functions in defense signaling mediated by MEKK1, MPK4, and MKS1. Plant Physiol 148: 212–222.
[38]
Petersen M, Brodersen P, Naested H, Andreasson E, Lindhart U, et al. (2000) Arabidopsis MAP kinase 4 negatively regulates systemic acquired resistance. Cell 103: 1111–1120.
[39]
Parker JE, Holub EB, Frost LN, Falk A, Gunn ND, et al. (1996) Characterization of eds1, a mutation in Arabidopsis suppressing resistance to Peronospora parasitica specified by several different RPP genes. Plant Cell 8: 2033–2046.
[40]
Delaney T, Uknes S, Vernooij B, Friedrich L, Weymann K, et al. (1994) A central role of salicylic acid in plant disease resistance. Science 18: 1247–1250.
[41]
Lackey K, Pope P, Johnson M (2003) Expression of 1L-myoinositol-1-phosphate synthase in organelles. Plant Physiol 132: 2240–2247.
Mateo A, Mühlenblock P, Rustérucci C, Chi-Chen C, Miszalski Z, et al. (2004) LESION SIMULATING DISEASE 1 is required for acclimation to conditions that promote excess excitation energy. Plant Physiol 136: 2818–2830.
[44]
Cao S, Ye M, Jiang S (2005) Involvement of GIGANTEA gene in the regulation of the cold stress response in Arabidopsis. Plant Cell Rep 24: 683–690.
[45]
Kurepa J, Smalle J, van Montagu M, Inze D (1998) Oxidative stress tolerance and longevity in Arabidopsis: the late-flowering mutant gigantea is tolerant to paraquat. Plant J 14: 759–764.
[46]
Achard P, Renou J, Berthomé R, Harberd NP, Genschik P (2008) Plant DELLAs restrain growth and promote survival of adversity by reducing the levels of reactive oxygen species. Curr Biol 18: 656–60.
[47]
Reape TJ, Molony EM, McCabe PF (2008) Programmed cell death in plants: distinguishing between different modes. J Exp Bot 59: 435–44.
[48]
Liu Y, Ren D, Pike S, Pallardy S, Gassmann W, et al. (2007) Chloroplast-generated reactive oxygen species are involved in hypersensitive response-like cell death mediated by a mitogen-activated protein kinase cascade. Plant J 51: 941–954.
[49]
Mühlenblock P, Szechynska-Hebda M, P?aszczyca M, Baudo M, Mullineaux PM, et al. (2008) Chloroplast signaling and LESION SIMULATING DISEASE1 regulate crosstalk between light acclimation and immunity in Arabidopsis. Plant Cell 20: 2339–2356.
[50]
Schwab R, Ossowski S, Riester M, Warthmann N, Weigel D (2006) Highly specific gene silencing by artificial microRNAs in Arabidopsis. Plant Cell 18: 1121–1133.
[51]
Susek R, Ausubel F, Chory J (1993) Signal transduction mutants of Arabidopsis uncouple nuclear CAB and RBCS gene expression from chloroplast development. Cell 74: 787–799.
[52]
Ishiwaka A (2005) Tetrapyrrole metabolism is involved in lesion formation, cell death, in the Arabidopsis lesion initiation 1 mutant. Biosci Biotechnol Biochem 69: 1929–1934.
[53]
Duronio V (2008) The life of a cell: apoptosis regulation by the PI3K/PKB pathway. Biochem J 415: 333–44.
[54]
Ortega X, Velasquez JC, Perez LM (2005) IP3 production in the hypersensitive response of lemon seedlings against Alternaria alternata involves active protein tyrosine kinases but not a G-protein. Biol Res 38: 89–99.
[55]
Liang H, Yao N, Song JT, Luo S, Lu H, et al. (2003) Ceramides modulate programmed cell death in plants. Genes Dev 17: 2636–2641.
[56]
Brodersen P, Petersen M, Pike HM, Olszak B, Skov S, et al. (2002) Knockout of Arabidopsis ACCELERATED-CELL-DEATH11 encoding a sphingosine transfer protein causes activation of programmed cell death and defense. Genes Dev 16: 490–502.
[57]
Wang W, Yang X, Tangchaiburana S, Ndeh R, Markham JE, et al. (2008) An inositolphosphorylceramide synthase is involved in regulation of plant programmed cell death associated with defense in Arabidopsis. Plant Cell 20: 3163–3179.
[58]
Queval G, Issakidis-bourguet E, Hoeberichts FA, Vandorpe M, Gakière B, et al. (2007) Conditional oxidative stress responses in the Arabidopsis photorespiratory mutant cat2 demonstrate that redox state is a key modulator of daylength-dependent gene expression, and define photoperiod as a crucial factor in the regulation of H2O2-induced cell death. Plant J 52: 640–657.
[59]
Kim M, Cho S, Kang E, Im Y, Hwangbo H, et al. (2008) Galactinol is a signaling component of the induced systemic resistance caused by Pseudomonas chlororaphis O6 root colonization. Mol Plant Microbe Interact 21: 1643–1653.
[60]
de Jager SM, Scofield S, Huntley RP, Robinson AS, den Boer BG, et al. (2009) Dissecting regulatory pathways of G1/S control in Arabidopsis: common and distinct targets of CYCD3;1, E2Fa and E2Fc. Plant Mol Biol [Epub ahead of print].
[61]
Alonso JM, Stepanova AN, Leisse TJ, Kim CJ, Chen H, et al. (2003) Genome-wide insertional mutagenesis of Arabidopsis thaliana. Science 301: 653–657.
[62]
Sambrook J, Fritsch E, Maniatis T (1989) Molecular Cloning. New York: Cold Spring Harbor Laboratory Press.
[63]
Perennes C, Glab N, Guglieni B, Doutriaux MP, Phan TH, et al. (1999) Is arcA3 a possible mediator in the signal transduction pathway during agonist cell cycle arrest by salicylic acid and UV irradiation? J Cell Sci 112: 1181–90.
[64]
Jasinski S, Riou-Khamlichi C, Roche O, Perennes C, Bergounioux C, et al. (2002) The CDK inhibitor NtKIS1a is involved in plant development, endoreduplication and restores normal development of Cyclin D3; 1-overexpressing plants. J Cell Sci 115: 973–982.
[65]
Raynaud C, Perennes C, Reuzeau C, Catrice O, Brown S, et al. (2005) Cell and plastid division are coordinated through the prereplication factor AtCDT1. Proc Natl Acad Sci USA 102: 8216–8221.
[66]
Baillieul F, Genetet I, Kopp M, Saindrenan P, Fritig B, et al. (1995) A new elicitor of the hypersensitive response in tobacco: a fungal glycoprotein elicits cell death, expression of defence genes, production of salicylic acid, and induction of systemic acquired resistance. Plant J 8: 551–60.
[67]
Weckwerth W, Loureiro ME, Wenzel K, Fiehn O (2004) Differential metabolic networks unravel the effects of silent plant phenotypes. Proc Natl Acad Sci USA 101: 7809–7814.
[68]
Crowe M, Serizet C, Thareau V, Aubourg S, Rouze P, et al. (2003) CATMA: a complete Arabidopsis GST database. Nucl Acids Res 31: 156–158.
[69]
Lurin C, Andre C, Aubourg S, Bellaoui M, Bitton F, et al. (2004) Genome-wide analysis of Arabidopsis Pentatricopeptide Repeat Proteins reveals their essential role in organelle biogenesis. Plant Cell 16: 2089–2103.