| [1] | Benner SA, Sismour AM (2005) Synthetic biology. Nat Rev Genet 6: 533–543.
|
| [2] | Endy D (2005) Foundations for engineering biology. Nature 438: 449–453.
|
| [3] | Leonard E, Nielsen D, Solomon K, Prather K (2008) Engineering microbes with synthetic biology frameworks. Trends Biotechnol 26: 674–681.
|
| [4] | Filipovska A, Rackham O (2008) Building a parallel metabolism within the cell. ACS Chem Biol 3: 51–63.
|
| [5] | Pryciak PM (2009) Designing New Cellular Signaling Pathways. Chem Biol 16: 249–254.
|
| [6] | Gardner TS, Cantor CR, Collins JJ (2000) Construction of a genetic toggle switch in Escherichia coli. Nature 403: 339–342.
|
| [7] | Elowitz MB, Leibler S (2000) A synthetic oscillatory network of transcriptional regulators. Nature 403: 335–338.
|
| [8] | Balagadde FK, Song H, Ozaki J, Collins CH, Barnet M, et al. (2008) A synthetic Escherichia coli predator-prey ecosystem. Molec Syst Biol 4: 187.
|
| [9] | Benner SA (2004) Redesigning genetics. Science 306: 625–626.
|
| [10] | Szostak JW, Bartel DP, Luisi PL (2001) Synthesizing life. Nature 409: 387–390.
|
| [11] | Hanczyc MM, Fujikawa SM, Szostak JW (2003) Experimental models of primitive cellular compartments: encapsulation, growth, and division. Science 302: 618–622.
|
| [12] | Sismour AM, Lutz S, Park JH, Lutz MJ, Boyer PL, et al. (2004) PCR amplification of DNA containing non-standard base pairs by variants of reverse transcriptase from Human Immunodeficiency Virus-1. Nuc Acids Res 32: 728–735.
|
| [13] | Delaney JC, Henderson PT, Helquist SA, Morales JC, Essigmann JM, et al. (2003) High-fidelity in vivo replication of DNA base shape mimics without Watson-Crick hydrogen bonds. Proc Natl Acad Sci USA 100: 4469–4473.
|
| [14] | Gibson DG, Benders GA, Andrews-Pfannkoch C, Denisova EA, Baden-Tillson H, et al. (2008) Complete chemical synthesis, assembly, and cloning of a Mycoplasma genitalium genome. Science 319: 1215–1220.
|
| [15] | Lartigue C, Glass JI, Alperovich N, Pieper R, Parmar PP, et al. (2007) Genome transplantation in bacteria: changing one species to another. Science 317: 632–638.
|
| [16] | Henry AA, Romesberg FA (2003) Beyond A, C, G and T: augmenting nature's alphabet. Curr Opin Chem Biol 7: 727–733.
|
| [17] | Elbeik T, Markowitz N, Nassos P, Kumar U, Beringer S, et al. (2004) Simultaneous runs of the Bayer VERSANT HIV-1 version 3.0 and HCV bDNA version 3.0 quantitative assays on the system 340 platform provide reliable quantitation and improved work flow. J Clin Microbiol 42: 3120–3127.
|
| [18] | Elbeik T, Surtihadi J, Destree M, Gorlin J, Holodniy M, et al. (2004) Multicenter evaluation of the performance characteristics of the Bayer VERSANT HCV RNA 3.0 assay (bDNA). J Clin Microbiol 42: 563–569.
|
| [19] | Schmid A, Dordick JS, Hauer B, Kiener A, Wubbolts M, et al. (2001) Industrial biocatalysis today and tomorrow. Nature 409: 258–268.
|
| [20] | Brakmann S (2001) Discovery of superior enzymes by directed molecular evolution. ChemBioChem 2: 865–871.
|
| [21] | Chaput JC, Woodbury NW, Stearns LA, Williams BAR (2008) Creating protein biocatalysts as tools for future industrial applications. Expert Opin Biol Ther 8: 1087–1098.
|
| [22] | Watkins JL, Chaput JC (2008) Searching Combinatorial Libraries for Native Proteins with Novel Folds. Chembiochem 9: 1361–1363.
|
| [23] | Wei YN, Kim S, Fela D, Baum J, Hecht MH (2003) Solution structure of a de novo protein from a designed combinatorial library. Proc Natl Acad Sci USA 100: 13270–13273.
|
| [24] | Kuhlman B, Dantas G, Ireton GC, Vanari G, Stoddard BL, et al. (2003) Design of a novel globular protein fold with atomic-level accuracy. Science 302: 1364–1368.
|
| [25] | Keefe AD, Szostak JW (2001) Functional proteins from a random-sequence library. Nature 410: 715–718.
|
| [26] | Chaput JC, Szostak JW (2004) Evolutionary optimization of a nonbiological ATP binding protein for improved folding stability. Chem Biol 11: 865–874.
|
| [27] | Mansy SS, Zhang JL, Kummerle R, Nilsson M, Chou JJ, et al. (2007) Structure and evolutionary analysis of a non-biological ATP-binding protein. J Mol Biol 371: 501–513.
|
| [28] | Smith MD, Rosenow MA, Wang M, Allen JP, Szostak JW, et al. (2007) Structural insights into the evolution of a non-biological protein: importance of surface residues in protein fold optimization. PLoS ONE 2: e467.
|
| [29] | Vetter IR, Wittinghofer A (1999) Nucleoside triphosphate-binding proteins: different scaffolds to achieve phosphoryl transfer. Q Rev Biophys 32: 1–56.
|
| [30] | Guzman LM, Belin D, Carson MJ, Beckwith J (1995) Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J Bacteriol 177: 4121–4130.
|
| [31] | Harry E, Monahan L, Thompson L (2006) Bacterial cell division: the mechanism and its precision. Int Rev Cytol 253: 27–94.
|
| [32] | Schena M, Shalon D, Davis RW, Brown PO (1995) Quantitative monitoring of gene expression patterns with a complementary DNA microarray. Science 270: 467–470.
|
| [33] | Huang D, Sherman B, Lempicki R (2009) Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nature Protocol 4: 44–57.
|
| [34] | MacNab RM (2003) How bacteria assemble flagella. Annu Rev Microbiol 57: 77–100.
|
| [35] | Chen GZ, Schellhorn HE (2003) Controlled induction of the RpoS regulon in Escherichia coli using an RpoS-expressing plasmid. Can J Microbiol 49: 733–740.
|
| [36] | Goehring NW, Beckwith J (2005) Diverse paths to midcell: assembly of the bacterial cell division machinery. Curr Biol 15: R14–R26.
|
| [37] | Scheffers D-J (2008) The effect of MinC on FtsZ polymerization is pH dependent and can be counteracted by ZapA. FEBS Lett 582: 2601–2608.
|
| [38] | Isalan M, Lemerle C, Michalodimitrakis K, Horn C, Beltrao P, et al. (2008) Evolvability and hierarchy in rewired bacterial gene networks. Nature 452: 840–845.
|
| [39] | Pruss B, Matsumura P (1996) A regulator of the flagellar regulon of Escherichia coli, flhD, also affects cell division. J Bacteriol 178: 668–674.
|
| [40] | Arends SJR, Weiss DS (2004) Inhibiting cell division in Escherichia coli has little if any effect on gene expression. J Bacteriol 186: 880–884.
|
| [41] | Suefuji K, Valluzzi R, RayChaudhuri D (2002) Dynamic assembly of MinD into filament bundles modulated by ATP, phospholipids, and MinE. Proc Natl Acad Sci USA 99: 16776–16781.
|
| [42] | Yim L, Vandenbussche G, Mingorance J, Rueda S, Casanova M, et al. (2000) Role of the carboxy terminus of Eschericia coli FtsA in self-interaction and cell division. J Bacteriol 182: 6366–6373.
|
| [43] | Dhar PK, Thwin CS, Tun K, Tsumoto Y, Maurer-Stroh S, et al. (2009) Synthesizing non-natural parts from natural genomic templates. J Biol Eng 3: 1–10.
|
| [44] | Justice SS, Hunstad DA, Seed PC, Hultgren SJ (2006) Filamentation by Escherichia coli subverts innate defenses during urinary tract infection. Proc Natl Acad Sci USA 103: 19884–19889.
|
| [45] | McBroom A, Kuehn M (2007) Release of outer membrane vesicles by Gram-negative bacteria is a novel envelope stress response. Mol Microbiol 63: 545–558.
|
| [46] | Walsh C (2003) Where will new antibiotics come from? Nature Rev Microbiol 1: 65–70.
|
| [47] | Chung HJ, Montville TJ, Chikindas ML (2000) Nisin depletes ATP and proton motive force in mycobacteria. Lett Appl Microbiol 31: 416–420.
|
| [48] | Lock RL, Harry EJ (2008) Cell-division inhibitors: new insights for future antibiotics. Nat Rev Drug Discov 7: 324–338.
|
