全部 标题 作者
关键词 摘要

OALib Journal期刊
ISSN: 2333-9721
费用:99美元

查看量下载量

相关文章

更多...

Toward an Open-Access Global Database for Mapping, Control, and Surveillance of Neglected Tropical Diseases

DOI: 10.1371/journal.pntd.0001404

Full-Text   Cite this paper   Add to My Lib

Abstract:

Background After many years of general neglect, interest has grown and efforts came under way for the mapping, control, surveillance, and eventual elimination of neglected tropical diseases (NTDs). Disease risk estimates are a key feature to target control interventions, and serve as a benchmark for monitoring and evaluation. What is currently missing is a georeferenced global database for NTDs providing open-access to the available survey data that is constantly updated and can be utilized by researchers and disease control managers to support other relevant stakeholders. We describe the steps taken toward the development of such a database that can be employed for spatial disease risk modeling and control of NTDs. Methodology With an emphasis on schistosomiasis in Africa, we systematically searched the literature (peer-reviewed journals and ‘grey literature’), contacted Ministries of Health and research institutions in schistosomiasis-endemic countries for location-specific prevalence data and survey details (e.g., study population, year of survey and diagnostic techniques). The data were extracted, georeferenced, and stored in a MySQL database with a web interface allowing free database access and data management. Principal Findings At the beginning of 2011, our database contained more than 12,000 georeferenced schistosomiasis survey locations from 35 African countries available under http://www.gntd.org. Currently, the database is expanded to a global repository, including a host of other NTDs, e.g. soil-transmitted helminthiasis and leishmaniasis. Conclusions An open-access, spatially explicit NTD database offers unique opportunities for disease risk modeling, targeting control interventions, disease monitoring, and surveillance. Moreover, it allows for detailed geostatistical analyses of disease distribution in space and time. With an initial focus on schistosomiasis in Africa, we demonstrate the proof-of-concept that the establishment and running of a global NTD database is feasible and should be expanded without delay.

References

[1]  Hotez PJ, Molyneux DH, Fenwick A, Ottesen E, Ehrlich Sachs S, et al. (2006) Incorporating a rapid-impact package for neglected tropical diseases with programs for HIV/AIDS, tuberculosis, and malaria. PLoS Med 3: e102. doi: 10.1371/journal.pmed.0030102
[2]  Hotez PJ, Brindley PJ, Bethony JM, King CH, Pearce EJ, et al. (2008) Helminth infections: the great neglected tropical diseases. J Clin Invest 118: 1311–1321. doi: 10.1172/JCI34261
[3]  Utzinger J, Bergquist R, Olveda R, Zhou XN (2010) Important helminth infections in Southeast Asia: diversity, potential for control and prospects for elimination. Adv Parasitol 72: 1–30. doi: 10.1016/S0065-308X(10)72001-7
[4]  WHO (2006) Neglected Tropical Diseases. 44 p. Available: http://whqlibdoc.who.int/hq/2006/WHO_CDS?_NTD_2006.2_eng.pdf. Accessed 2010 Jul 29.
[5]  Hotez P (2008) Hookworm and poverty. Ann N Y Acad Sci 1136: 38–44. doi: 10.1196/annals.1425.000
[6]  King CH (2010) Parasites and poverty: the case of schistosomiasis. Acta Trop 113: 95–104. doi: 10.1016/j.actatropica.2009.11.012
[7]  Fenwick A (2006) New initiatives against Africa's worms. Trans R Soc Trop Med Hyg 100: 200–207. doi: 10.1016/j.trstmh.2005.03.014
[8]  Hotez PJ (2009) Mass drug administration and integrated control for the world's high-prevalence neglected tropical diseases. Clin Pharmacol Ther 85: 659–664. doi: 10.1038/clpt.2009.16
[9]  Lammie PJ, Fenwick A, Utzinger J (2006) A blueprint for success: integration of neglected tropical disease control programmes. Trends Parasitol 22: 313–321. doi: 10.1016/j.pt.2006.05.009
[10]  Molyneux DH (2006) Elimination of transmission of lymphatic filariasis in Egypt. Lancet 367: 966–968. doi: 10.1016/S0140-6736(06)68404-3
[11]  Smits HL (2009) Prospects for the control of neglected tropical diseases by mass drug administration. Expert Rev Anti Infect Ther 7: 37–56. doi: 10.1586/14787210.7.1.37
[12]  Brooker S, Rowlands M, Haller L, Savioli L, Bundy DAP (2000) Towards an atlas of human helminth infection in sub-Saharan Africa: the use of geographical information systems (GIS). Parasitol Today 16: 303–307. doi: 10.1016/S0169-4758(00)01687-2
[13]  Brooker S, Kabatereine NB, Smith JL, Mupfasoni D, Mwanje MT, et al. (2009) An updated atlas of human helminth infections: the example of East Africa. Int J Health Geogr 8: 42. doi: 10.1186/1476-072X-8-42
[14]  Brooker S, Kabatereine NB, Gyapong JO, Stothard JR, Utzinger J (2009) Rapid mapping of schistosomiasis and other neglected tropical diseases in the context of integrated control programmes in Africa. Parasitology 136: 1707–1718. doi: 10.1017/S0031182009005940
[15]  Brooker S (2010) Estimating the global distribution and disease burden of intestinal nematode infections: adding up the numbers - a review. Int J Parasitol 40: 1137–1144. doi: 10.1016/j.ijpara.2010.04.004
[16]  Simoonga C, Utzinger J, Brooker S, Vounatsou P, Appleton CC, et al. (2009) Remote sensing, geographical information system and spatial analysis for schistosomiasis epidemiology and ecology in Africa. Parasitology 136: 1683–1693. doi: 10.1017/S0031182009006222
[17]  Doumenge JP, Mott KE, Cheung C, Villenave D, Chapuis O, et al. (1987) Atlas of the global distribution of schistosomiasis. Presses Universitaires de Bordeaux.
[18]  Brooker S, Hotez PJ, Bundy DAP (2010) The global atlas of helminth infection: mapping the way forward in neglected tropical disease control. PLoS Negl Trop Dis 4: e779. doi: 10.1371/journal.pntd.0000779
[19]  Smith JL, Haddad D, Polack S, Harding-Esch EM, Hooper PJ, et al. (2011) Mapping the global distribution of trachoma: why an updated atlas is needed. PLoS Negl Trop Dis 5: e973. doi: 10.1371/journal.pntd.0000973
[20]  Kristensen TK (2008) African schistosomiasis: refocusing upon the environment. Newsletter of the Royal Society of Tropical Medicine and Hygiene 13: 1–8.
[21]  Stothard JR, Chitsulo L, Kristensen TK, Utzinger J (2009) Control of schistosomiasis in sub-Saharan Africa: progress made, new opportunities and remaining challenges. Parasitology 136: 1665–1675. doi: 10.1017/S0031182009991272
[22]  Gryseels B, Polman K, Clerinx J, Kestens L (2006) Human schistosomiasis. Lancet 368: 1106–1118. doi: 10.1016/S0140-6736(06)69440-3
[23]  Steinmann P, Keiser J, Bos R, Tanner M, Utzinger J (2006) Schistosomiasis and water resources development: systematic review, meta-analysis, and estimates of people at risk. Lancet Infect Dis 6: 411–425. doi: 10.1016/S1473-3099(06)70521-7
[24]  PubMedNational Center for Biotechnology Information. Available: http://www.ncbi.nlm.nih.gov/sites/entrez. Accessed 2010 Sep 30.
[25]  ISI - Web of KnowledgeThomson Reuters. Available: http://www.isiwebofknowledge.com/. Accessed 2010 Sep 30.
[26]  African Journals Online (AJOL) Available: http://ajol.info/. Accessed 2010 Sep 30.
[27]  WHO publicationsWorld Health Organization. Available: http://www.who.int/publications/en/; http://libdoc.who.int/. Accessed 2010 Jan 31.
[28]  IRD - Ressources documentairesInstitut de recherche pour le développement. Available: http://horizon.documentation.ird.fr. Accessed 2010 Jan 31.
[29]  Reference Manager 11, version 11 [computer program]. Thomson ISI ResearchSoft.
[30]  NGA Geonet Names Server (GNS)National Geospatial-Intelligence Agency. Available: http://earth-info.nga.mil/gns/html/index?.html. Accessed 2010 Dec 20.
[31]  Google mapsGoogle. Available: http://maps.google.com/. Accessed 2010 Dec 20.
[32]  MaNIS/HerpNEt/Ornis georeferencing guidelines. MaNIS/HerpNEt/Ornis network. Available: http://manisnet.org/GeorefGuide.html. Accessed 2010 Dec 20.
[33]  Shears P, Lusty T (1987) Communicable disease epidemiology following migration: studies from the African famine. Int Migr Rev 21: 783–795. doi: 10.2307/2546622
[34]  Watts SJ (1987) Population mobility and disease transmission: the example of guinea worm. Soc Sci Med 25: 1073–1081. doi: 10.1016/0277-9536(87)90348-0
[35]  WHO (2002) Prevention and control of schistosomiasis and soil-transmitted helminthiasis : report of a WHO expert committee. WHO Techn Rep Ser 912: 1–57.
[36]  MySQL AB (1995) MySQL: the world's most popular open source database. Available: http://www.mysql.com/. Accessed 2009 Mar 1.
[37]  Arntzen TC, Bakken S, Caraveo S, Gutmans A, Lerdorf R, et al. (2001) PHP: a widely used general purpose scripting language. Available: http://www.php.net/. Accessed 2010 Jul 29.
[38]  Widenius M, Axmark D, MySQL AB (2002) MySQL reference manual. Documentation from the Source. O'Reilly Community Press.
[39]  United Nations Population Division Available: http://www.un.org/esa/population/publica?tions/worldageing19502050/pdf/96annexii.?pdf. Accessed 2010 Jul 29.
[40]  Bergquist R, Johansen MV, Utzinger J (2009) Diagnostic dilemmas in helminthology: what tools to use and when? Trends Parasitol 25: 151–156. doi: 10.1016/j.pt.2009.01.004
[41]  Hay SI, Guerra CA, Gething PW, Patil AP, Tatem AJ, et al. (2009) A world malaria map: Plasmodium falciparum endemicity in 2007. PLoS Med 6: e1000048. doi: 10.1371/journal.pmed.1000048
[42]  Le Sueur D, Binka F, Lengeler C, de Savigny D, Snow B, et al. (1997) An atlas of malaria in Africa. Afr Health 19: 23–24.
[43]  Schur N, Hürlimann E, Garba A, Traore MS, Ndir O, et al. (2011) Geostatistical model-based estimates of schistosomiasis prevalence among individuals aged ≤20 years in West Africa. PLoS Negl Trop Dis 5: e1194. doi: 10.1371/journal.pntd.0001194
[44]  Emmert DB, Stoehr PJ, Stoesser G, Cameron GN (1994) The European Bioinformatics Institute (EBI) databases. Nucleic Acids Res 22: 3445–3449. doi: 10.1093/nar/22.17.3445
[45]  Lawson D, Arensburger P, Atkinson P, Besansky NJ, Bruggner RV, et al. (2009) VectorBase: a data resource for invertebrate vector genomics. Nucleic Acids Research 37: D583–D587. doi: 10.1093/nar/gkn857
[46]  Ramana J, Gupta D (2009) ProtVirDB: a database of protozoan virulent proteins. Bioinformatics 25: 1568–1569. doi: 10.1093/bioinformatics/btp258
[47]  Global Biodiversity Information FacilityGBIF, Denmark. Available: http://data.gbif.org/welcome.htm. Accessed 2010 Jul 29.
[48]  Lee K, Bacchetti P, Sim I (2008) Publication of clinical trials supporting successful new drug applications: a literature analysis. PLoS Med 5: e191. doi: 10.1371/journal.pmed.0050191
[49]  Pan JJ, Nahm M, Wakim P, Cushing C, Poole L, et al. (2009) A centralized informatics infrastructure for the National Institute on Drug Abuse Clinical Trials Network. Clin Trials 6: 67–75. doi: 10.1177/1740774508100983
[50]  Cohen J (2008) Science and society. Science goes Hollywood: NAS links with entertainment industry. Science 322: 1315. doi: 10.1126/science.322.5906.1315
[51]  MARA - Malaria Risk in Africa Available: http://www.mara-database.org. Accessed 2010 Jul 29.
[52]  WorldWide Antimalarial Resistance NetworkUniversity of Oxford. Available: http://www.wwarn.org. Accessed 2010 Jul 29.
[53]  Sibley CH, Barnes KI, Plowe CV (2007) The rationale and plan for creating a World Antimalarial Resistance Network (WARN). Malar J 6: 118. doi: 10.1186/1475-2875-6-118
[54]  Mosquito MapSmithsonian Institution, Washington DC. Available: http://wrbu.si.edu/mosqMap/index.htm. Accessed 2010 Jul 29.
[55]  Moffett A, Strutz S, Guda N, Gonzalez C, Ferro MC, et al. (2009) A global public database of disease vector and reservoir distributions. PLoS Negl Trop Dis 3: e378. doi: 10.1371/journal.pntd.0000378
[56]  Utzinger J, Booth M, N'Goran EK, Muller I, Tanner M, et al. (2001) Relative contribution of day-to-day and intra-specimen variation in faecal egg counts of Schistosoma mansoni before and after treatment with praziquantel. Parasitology 122: 537–544. doi: 10.1017/S0031182001007752
[57]  WHO (2008) World malaria report 2008. WHO Press. 190 p.
[58]  Ouma JH, Waithaka F (1978) Prevalence of Schistosoma mansoni and Schistosoma haematobium in Kitui district, Kenya. East Afr Med J 55: 54–60.
[59]  Wenlock RW (1977) The prevalence of hookworm and of S. haematobium in rural Zambia. Trop Geogr Med 29: 415–421.
[60]  Rudge JW, Stothard JR, Basanez MG, Mgeni AF, Khamis IS, et al. (2008) Micro-epidemiology of urinary schistosomiasis in Zanzibar: local risk factors associated with distribution of infections among schoolchildren and relevance for control. Acta Trop 105: 45–54. doi: 10.1016/j.actatropica.2007.09.006
[61]  Yapi YG, Bri?t OJT, Diabate S, Vounatsou P, Akodo E, et al. (2005) Rice irrigation and schistosomiasis in savannah and forest areas of C?te d'Ivoire. Acta Trop 93: 201–211. doi: 10.1016/j.actatropica.2004.11.005
[62]  Gray DJ, Forsyth SJ, Li RS, McManus DP, Li Y, et al. (2009) An innovative database for epidemiological field studies of neglected tropical diseases. PLoS Negl Trop Dis 3: e413. doi: 10.1371/journal.pntd.0000413
[63]  Green E (2008) District creation and decentralisation in Uganda. Crisis States Working Papers Series No. 2. Working paper No. 24 - Development as State-Making. Available: http://www2.lse.ac.uk/internationalDevel?opment/research/crisisStates/download/wp?/wpSeries2/wp232.pdf. Accessed 2010 Jul 29.
[64]  Stensgaard AS, Saarnak CF, Utzinger J, Vounatsou P, Simoonga C, et al. (2009) Virtual globes and geospatial health: the potential of new tools in the management and control of vector-borne diseases. Geospat Health 3: 127–141.
[65]  Aanensen DM, Huntley DM, Feil EJ, al-Own F, Spratt BG (2009) EpiCollect: linking smartphones to web applications for epidemiology, ecology and community data collection. PLoS One 4: e6968. doi: 10.1371/journal.pone.0006968

Full-Text

Contact Us

service@oalib.com

QQ:3279437679

WhatsApp +8615387084133