BMC Systems Biology - oalib

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BMC Systems Biology

ISSN Print: 1752-0509

ISSN Online:

主页: http://www.biomedcentral.com/bmcsystbiol

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Characterization the regulation of herpesvirus miRNAs from the view of human protein interaction network

Zhenpeng Li, Fei Li, Ming Ni, Peng Li, Xiaochen Bo, Shengqi Wang

Rule-based multi-level modeling of cell biological systems

Carsten Maus, Stefan Rybacki, Adelinde M Uhrmacher

Genomic phenotyping of the essential and non-essential yeast genome detects novel pathways for alkylation resistance

J Peter Svensson, Laia Pesudo, Rebecca C Fry, Yeyejide A Adeleye, Paul Carmichael, Leona D Samson

Models of sequestration and receptor cross-talk for explaining multiple mutants in plant stem cell regulation

Patrik Sahlin, Pontus Melke, Henrik J？nsson

A multi-tissue type genome-scale metabolic network for analysis of whole-body systems physiology

Aarash Bordbar, Adam M Feist, Renata Usaite-Black, Joseph Woodcock, Bernhard O Palsson, Iman Famili

Robust Control of PEP Formation Rate in the Carbon Fixation Pathway of C4 Plants by a Bi-functional Enzyme

Yuval Hart, Avraham E Mayo, Ron Milo, Uri Alon

BiologicalNetworks - tools enabling the integration of multi-scale data for the host-pathogen studies

Sergey Kozhenkov, Mayya Sedova, Yulia Dubinina, Amarnath Gupta, Animesh Ray, Julia Ponomarenko, Michael Baitaluk

Parameter estimation in systems biology models using spline approximation

Choujun Zhan, Lam F Yeung

From qualitative data to quantitative models: analysis of the phage shock protein stress response in Escherichia coli

Tina Toni, Goran Jovanovic, Maxime Huvet, Martin Buck, Michael PH Stumpf

A systems biology approach to investigate the effect of pH-induced gene regulation on solvent production by Clostridium acetobutylicum in continuous culture

Sylvia Haus, Sara Jabbari, Thomas Millat, Holger Janssen, Ralf-J？rg Fischer, Hubert Bahl, John R King, Olaf Wolkenhauer

Noise regulation by quorum sensing in low mRNA copy number systems

Marc Weber, Javier Buceta

Metabolomic correlation-network modules in Arabidopsis based on a graph-clustering approach

Atsushi Fukushima, Miyako Kusano, Henning Redestig, Masanori Arita, Kazuki Saito

A general framework for modeling growth and division of mammalian cells

John H Gauthier, Phillip I Pohl

Genome-scale reconstruction of metabolic network for a halophilic extremophile, Chromohalobacter salexigens DSM 3043

？zlem Ates, Ebru Oner, Kazim Y Arga

Initial characterization of the human central proteome

Thomas R Burkard, Melanie Planyavsky, Ines Kaupe, Florian P Breitwieser, Tilmann Bürckstümmer, Keiryn L Bennett, Giulio Superti-Furga, Jacques Colinge

Phenotypic heterogeneity in mycobacterial stringent response

Sayantari Ghosh, Kamakshi Sureka, Bhaswar Ghosh, Indrani Bose, Joyoti Basu, Manikuntala Kundu

Interactions among oscillatory pathways in NF-kappa B signaling

Yunjiao Wang, Pawel Paszek, Caroline A Horton, Douglas B Kell, Michael RH White, David S Broomhead, Mark R Muldoon

A Boolean probabilistic model of metabolic adaptation to oxygen in relation to iron homeostasis and oxidative stress

Fiona Achcar, Jean-Michel Camadro, Denis Mestivier

Convergence of Logic of Cellular Regulation in Different Premalignant Cells by an Information Theoretic Approach

Nataly Kravchenko-Balasha, F Remacle, Ayelet Gross, Varda Rotter, Alexander Levitzki, RD Levine

Exploring the metabolic network of the epidemic pathogen Burkholderia cenocepacia J2315 via genome-scale reconstruction

Kechi Fang, Hansheng Zhao, Changyue Sun, Carolyn M C Lam, Suhua Chang, Kunlin Zhang, Gurudutta Panda, Miguel Godinho, Vítor A P Martins dos Santos, Jing Wang

Symbolic flux analysis for genome-scale metabolic networks

David W Schryer, Marko Vendelin, Pearu Peterson

Systems mapping: how to improve the genetic mapping of complex traits through design principles of biological systems

Rongling Wu, Jiguo Cao, Zhongwen Huang, Zhong Wang, Junyi Gai, Eduardo Vallejos

SPABBATS: A pathway-discovery method based on Boolean satisfiability that facilitates the characterization of suppressor mutants

Lope A Flórez, Katrin Gunka, Rafael Polanía, Stefan Tholen, J？rg Stülke

Stochastic simulations of the tetracycline operon

Konstantinos Biliouris, Prodromos Daoutidis, Yiannis N Kaznessis

Understanding and predicting synthetic lethal genetic interactions in Saccharomyces cerevisiae using domain genetic interactions

Bo Li, Weiguo Cao, Jizhong Zhou, Feng Luo

Expanding a dynamic flux balance model of yeast fermentation to genome-scale

Felipe A Vargas, Francisco Pizarro, J Ricardo Pérez-Correa, Eduardo Agosin

Steady-state global optimization of metabolic non-linear dynamic models through recasting into power-law canonical models

Carlos Pozo, Alberto Marín-Sanguino, Rui Alves, Gonzalo Guillén-Gosálbez, Laureano Jiménez, Albert Sorribas

Leveraging social networks for understanding the evolution of epidemics

Martín Gonzalo,Marinescu Maria-Cristina,Singh David E,Carretero Jesús

State Space Model with hidden variables for reconstruction of gene regulatory networks

Wu Xi,Li Peng,Wang Nan,Gong Ping

Polytomy identification in microbial phylogenetic reconstruction

Lin Guan,Zhang Chao,Xu Dong

Kernelized partial least squares for feature reduction and classification of gene microarray data

Land Walker H,Qiao Xingye,Margolis Daniel E,Ford William S

Statistical methods on detecting differentially expressed genes for RNA-seq data

Chen Zhongxue,Liu Jianzhong,Ng Hon,Nadarajah Saralees

Functional pathway mapping analysis for hypoxia-inducible factors

Chuang Chia-Sheng,Pai Tun-Wen,Hu Chin-Hua,Tzou Wen-Shyong

A transcriptional dynamic network during Arabidopsis thaliana pollen development

Wang Jigang,Qiu Xiaojie,Li Yuhua,Deng Youping

A comprehensive network and pathway analysis of candidate genes in major depressive disorder

Jia Peilin,Kao Chung-Feng,Kuo Po-Hsiu,Zhao Zhongming

Integration of breast cancer gene signatures based on graph centrality

Wang Jianxin,Chen Gang,Li Min,Pan Yi

An integrated proteomics analysis of bone tissues in response to mechanical stimulation

Li Jiliang,Zhang Fan,Chen Jake Y

Biological network motif detection and evaluation

Kim Wooyoung,Li Min,Wang Jianxin,Pan Yi

miR2Gene: pattern discovery of single gene, multiple genes, and pathways by enrichment analysis of their microRNA regulators

Qiu Chengxiang,Wang Juan,Cui Qinghua

From genes to networks: in systematic points of view

Zhang Ke,Liu Yunlong,Yang Jack Y,Arabnia Hamid R

Bayesian parameter estimation for nonlinear modelling of biological pathways

Ghasemi Omid,Lindsey Merry L,Yang Tianyi,Nguyen Nguyen

Exploring virus relationships based on virus-host protein-protein interaction network

Xu Feng,Zhao Chen,Li Yuhua,Li Jiang

An integrative analysis of DNA methylation and RNA-Seq data for human heart, kidney and liver

Xie Linglin,Weichel Brent,Ohm Joyce,Zhang Ke

Mass segmentation using a combined method for cancer detection

Liu Jun,Chen Jianxun,Liu Xiaoming,Chun Lei

Metabolic effects of influenza virus infection in cultured animal cells: Intra- and extracellular metabolite profiling

Joachim B Ritter, Aljoscha S Wahl, Susann Freund, Yvonne Genzel, Udo Reichl

Spatio-temporal modeling of signaling protein recruitment to EGFR

Ming-yu Hsieh, Shujie Yang, Mary Raymond-Stinz, Jeremy S Edwards, Bridget S Wilson

Comparative analysis of cis-regulation following stroke and seizures in subspaces of conserved eigensystems

Michal Dabrowski, Norbert Dojer, Malgorzata Zawadzka, Jakub Mieczkowski, Bozena Kaminska

Building and analyzing protein interactome networks by cross-species comparisons

Amy M Wiles, Mark Doderer, Jianhua Ruan, Ting-Ting Gu, Dashnamoorthy Ravi, Barron Blackman, Alexander JR Bishop

Stochastic and deterministic multiscale models for systems biology: an auxin-transport case study

Jamie Twycross, Leah R Band, Malcolm J Bennett, John R King, Natalio Krasnogor

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