BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Global effect of RpoS on gene expression in pathogenic Escherichia coli O157:H7 strain EDL933

Tao Dong, Herb E Schellhorn

Characterization of the Zoarces viviparus liver transcriptome using massively parallel pyrosequencing

Erik Kristiansson, Noomi Asker, Lars F？rlin, DG Joakim Larsson

Stretches of alternating pyrimidine/purines and purines are respectively linked with pathogenicity and growth temperature in prokaryotes

Jon Bohlin, Simon P Hardy, David W Ussery

Genomic analysis of a sexually-selected character: EST sequencing and microarray analysis of eye-antennal imaginal discs in the stalk-eyed fly Teleopsis dalmanni (Diopsidae)

Richard H Baker, Jenna Morgan, Xianhui Wang, Jeffrey L Boore, Gerald S Wilkinson

Putative DNA G-quadruplex formation within the promoters of Plasmodium falciparum var genes

Nicolas Smargiasso, Valérie Gabelica, Christian Damblon, Frédéric Rosu, Edwin De Pauw, Marie-Paule Teulade-Fichou, J Rowe, Antoine Claessens

Statistical aspects of discerning indel-type structural variation via DNA sequence alignment

Michael C Wendl, Richard K Wilson

A proposed syntax for Minimotif Semantics, version 1

Jay Vyas, Ronald J Nowling, Mark W Maciejewski, Sanguthevar Rajasekaran, Michael R Gryk, Martin R Schiller

Moderate strength (0.23–0.28 T) static magnetic fields (SMF) modulate signaling and differentiation in human embryonic cells

Zhiyun Wang, Anshu Sarje, Pao-Lin Che, Kevin J Yarema

Comparative genomic analyses of Streptococcus mutans provide insights into chromosomal shuffling and species-specific content

Fumito Maruyama, Mitsuhiko Kobata, Ken Kurokawa, Keishin Nishida, Atsuo Sakurai, Kazuhiko Nakano, Ryota Nomura, Shigetada Kawabata, Takashi Ooshima, Kenta Nakai, Masahira Hattori, Shigeyuki Hamada, Ichiro Nakagawa

Comparative genomic analysis uncovers 3 novel loci encoding type six secretion systems differentially distributed in Salmonella serotypes

Carlos J Blondel, Juan C Jiménez, Inés Contreras, Carlos A Santiviago

Genome-wide computational identification of functional RNA elements in Trypanosoma brucei

Yuan Mao, Hamed Najafabadi, Reza Salavati

Gene expression profiling via LongSAGE in a non-model plant species: a case study in seeds of Brassica napus

Christian Obermeier, Bashir Hosseini, Wolfgang Friedt, Rod Snowdon

Differential expression proteomics to investigate responses and resistance to Orobanche crenata in Medicago truncatula

Ma ángeles Castillejo, Ana M Maldonado, Eliane Dumas-Gaudot, Mónica Fernández-Aparicio, Rafael Susín, Rubiales Diego, Jesús V Jorrín

Whole genome expression analysis within the angiotensin II-apolipoprotein E deficient mouse model of abdominal aortic aneurysm

Catherine Rush, Moses Nyara, Joseph V Moxon, Alexandra Trollope, Bradford Cullen, Jonathan Golledge

Genome-wide scans using archived neonatal dried blood spot samples

Mads V Hollegaard, Jonas Grauholm, Anders B？rglum, Mette Nyegaard, Bent N？rgaard-Pedersen, Torben ？rntoft, Preben B Mortensen, Carsten Wiuf, Ole Mors, Michael Didriksen, Poul Thorsen, David M Hougaard

Comprehensive identification of essential Staphylococcus aureus genes using Transposon-Mediated Differential Hybridisation (TMDH)

Roy R Chaudhuri, Andrew G Allen, Paul J Owen, Gil Shalom, Karl Stone, Marcus Harrison, Timothy A Burgis, Michael Lockyer, Jorge Garcia-Lara, Simon J Foster, Stephen J Pleasance, Sarah E Peters, Duncan J Maskell, Ian G Charles

Transcriptome analysis of the venom gland of the scorpion Scorpiops jendeki: implication for the evolution of the scorpion venom arsenal

Yibao Ma, Ruiming Zhao, Yawen He, Songryong Li, Jun Liu, Yingliang Wu, Zhijian Cao, Wenxin Li

A BAC-based physical map of the Hessian fly genome anchored to polytene chromosomes

Rajat Aggarwal, Thiago R Benatti, Navdeep Gill, Chaoyang Zhao, Ming-Shun Chen, John P Fellers, Brandon J Schemerhorn, Jeff J Stuart

Disorders of sex development expose transcriptional autonomy of genetic sex and androgen-programmed hormonal sex in human blood leukocytes

Paul-Martin Holterhus, Jan-Hendrik Bebermeier, Ralf Werner, Janos Demeter, Annette Richter-Unruh, Gunnar Cario, Mahesh Appari, Reiner Siebert, Felix Riepe, James D Brooks, Olaf Hiort

Analysis of expression in the Anopheles gambiae developing testes reveals rapidly evolving lineage-specific genes in mosquitoes

Elzbieta Krzywinska, Jaroslaw Krzywinski

Deep sampling of the Palomero maize transcriptome by a high throughput strategy of pyrosequencing

Julio C Vega-Arreguín, Enrique Ibarra-Laclette, Beatriz Jiménez-Moraila, Octavio Martínez, Jean Vielle-Calzada, Luis Herrera-Estrella, Alfredo Herrera-Estrella

A genetic linkage map for the saltwater crocodile (Crocodylus porosus)

Lee G Miles, Sally R Isberg, Travis C Glenn, Stacey L Lance, Pauline Dalzell, Peter C Thomson, Chris Moran

Detection of differentially expressed genes between Erhualian and Large White placentas on day 75 and 90 of gestation

Quan-Yong Zhou, Ming-Di Fang, Ting-Hua Huang, Chang-Chun Li, Mei Yu, Shu-Hong Zhao

Divergence in function and expression of the NOD26-like intrinsic proteins in plants

Qingpo Liu, Huasen Wang, Zhonghua Zhang, Jiasheng Wu, Ying Feng, Zhujun Zhu

In silico identification of a core regulatory network of OCT4 in human embryonic stem cells using an integrated approach

Lukas Chavez, Abha S Bais, Martin Vingron, Hans Lehrach, James Adjaye, Ralf Herwig

P2CS: a two-component system resource for prokaryotic signal transduction research

Mohamed Barakat, Philippe Ortet, Cécile Jourlin-Castelli, Mireille Ansaldi, Vincent Méjean, David E Whitworth

Genomic Resources of Magnaporthe oryzae (GROMO): A comprehensive and integrated database on rice blast fungus

Shalabh Thakur, Sanjay Jha, Subhankar Roy-Barman, Bharat Chattoo

Genome wide analysis of human genes transcriptionally and post-transcriptionally regulated by the HTLV-I protein p30

John M Taylor, Sofiane Ghorbel, Christophe Nicot

Inconsistencies of genome annotations in apicomplexan parasites revealed by 5'-end-one-pass and full-length sequences of oligo-capped cDNAs

Hiroyuki Wakaguri, Yutaka Suzuki, Masahide Sasaki, Sumio Sugano, Junichi Watanabe

Natural variation in gene expression in the early development of dauer larvae of Caenorhabditis elegans

Simon C Harvey, Gary LA Barker, Alison Shorto, Mark E Viney

A method for identifying alternative or cryptic donor splice sites within gene and mRNA sequences. Comparisons among sequences from vertebrates, echinoderms and other groups

Katherine M Buckley, Liliana D Florea, L Courtney Smith

Gene expression patterns in heterozygous Plk4 murine embryonic fibroblasts

Alan Morettin, Alejandra Ward, Jordan Nantais, John W Hudson

Integrative sequence and tissue expression profiling of chicken and mammalian aquaporins

Isokpehi Raphael D,Rajnarayanan Rajendram V,Jeffries Cynthia D,Oyeleye Tolulola O

PDA: an automatic and comprehensive analysis program for protein-DNA complex structures

Kim RyangGuk,Guo Jun-tao

High-throughput single nucleotide polymorphism genotyping using nanofluidic Dynamic Arrays

Wang Jun,Lin Min,Crenshaw Andrew,Hutchinson Amy

Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers

Cabrera Antonio,Kozik Alex,Howad Werner,Arus Pere

Prediction of avian influenza A binding preference to human receptor using conformational analysis of receptor bound to hemagglutinin

Jongkon Nipa,Mokmak Wanwimon,Chuakheaw Daungmanee,Shaw Philip J

High frequency of microsatellites in S. cerevisiae meiotic recombination hotspots

Andrew TM Bagshaw, Joel PW Pitt, Neil J Gemmell

Comparative analysis of the Photorhabdus luminescens and the Yersinia enterocolitica genomes: uncovering candidate genes involved in insect pathogenicity

Ralf Heermann, Thilo M Fuchs

Identification of protein secretion systems and novel secreted proteins in Rhizobium leguminosarum bv. viciae

Martin Krehenbrink, J Allan Downie

Gene conversion in the rice genome

Shuqing Xu, Terry Clark, Hongkun Zheng, S？ren Vang, Ruiqiang Li, Gane Wong, Jun Wang, Xiaoguang Zheng

Differential screening identifies transcripts with depot-dependent expression in white adipose tissues

Yu Wu, Ji Kim, Shengli Zhou, Cynthia M Smas

Rapid functional diversification in the structurally conserved ELAV family of neuronal RNA binding proteins

Marie-Laure Samson

Gene organization, evolution and expression of the microtubule-associated protein ASAP (MAP9)

Magali Venoux, Karine Delmouly, Ollivier Milhavet, Sophie Vidal-Eychenié, Dominique Giorgi, Sylvie Rouquier

Multiple displacement amplification for complex mixtures of DNA fragments

Muhammad Shoaib, Sonia Baconnais, Undine Mechold, Eric Le Cam, Marc Lipinski, Vasily Ogryzko

Sequence conservation and combinatorial complexity of Drosophila neural precursor cell enhancers

Thomas Brody, Wayne Rasband, Kevin Baler, Alexander Kuzin, Mukta Kundu, Ward F Odenwald

Genomic organization, sequence divergence, and recombination of feline immunodeficiency virus from lions in the wild

Jill Pecon-Slattery, Carrie L McCracken, Jennifer L Troyer, Sue VandeWoude, Melody Roelke, Kerry Sondgeroth, Christiaan Winterbach, Hanlie Winterbach, Stephen J O'Brien

Analysis of the retinal gene expression profile after hypoxic preconditioning identifies candidate genes for neuroprotection

Markus Thiersch, Wolfgang Raffelsberger, Rico Frigg, Marijana Samardzija, Andreas Wenzel, Olivier Poch, Christian Grimm

Novel functional view of the crocidolite asbestos-treated A549 human lung epithelial transcriptome reveals an intricate network of pathways with opposing functions

Joan M Hevel, Laura C Olson-Buelow, Balasubramanian Ganesan, John R Stevens, Jared P Hardman, Ann E Aust

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