BMC Genomics - oalib

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BMC Genomics

ISSN Print: 1471-2164

ISSN Online:

主页: http://www.biomedcentral.com/bmcgenomics

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Structural characterization of helitrons and their stepwise capturing of gene fragments in the maize genome

Yongbin Dong, Xiaomin Lu, Weibin Song, Lei Shi, Mei Zhang, Hainan Zhao, Yinping Jiao, Jinsheng Lai

Protein composition of interband regions in polytene and cell line chromosomes of Drosophila melanogaster

Sergey A Demakov, Tatyana Yu Vatolina, Vladimir N Babenko, Valery F Semeshin, Elena S Belyaeva, Igor F Zhimulev

Transcriptional analysis of the HeT-A retrotransposon in mutant and wild type stocks reveals high sequence variability at Drosophila telomeres and other unusual features

David Pi？eyro, Elisenda López-Panadès, María Lucena-Pérez, Elena Casacuberta

Novel features of ARS selection in budding yeast Lachancea kluyveri

Ivan Liachko, Emi Tanaka, Katherine Cox, Shau Chee Chung, Lu Yang, Arael Seher, Lindsay Hallas, Eugene Cha, Gina Kang, Heather Pace, Jasmine Barrow, Maki Inada, Bik-Kwoon Tye, Uri Keich

Thyroid hormone-regulated gene expression in juvenile mouse liver: identification of thyroid response elements using microarray profiling and in silico analyses

Martin A Paquette, Hongyan Dong, Rémi Gagné, Andrew Williams, Morie Malowany, Mike G Wade, Carole L Yauk

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery

Paul Stothard, Jung-Woo Choi, Urmila Basu, Jennifer M Sumner-Thomson, Yan Meng, Xiaoping Liao, Stephen S Moore

The repertoire of G protein-coupled receptors in the human parasite Schistosoma mansoni and the model organism Schmidtea mediterranea

Mostafa Zamanian, Michael J Kimber, Paul McVeigh, Steve A Carlson, Aaron G Maule, Tim A Day

Differentially expressed profiles in the larval testes of Wolbachia infected and uninfected Drosophila

Ya Zheng, Jia-Lin Wang, Chen Liu, Cui-Ping Wang, Thomas Walker, Yu-Feng Wang

Subfunctionalization reduces the fitness cost of gene duplication in humans by buffering dosage imbalances

Ariel Fernández, Yun-Huei Tzeng, Sze-Bi Hsu

MicroRNA-mediated gene regulation plays a minor role in the transcriptomic plasticity of cold-acclimated Zebrafish brain tissue

Ruolin Yang, Zhonghua Dai, Shue Chen, Liangbiao Chen

An expression map for Anopheles gambiae

Robert M MacCallum, Seth N Redmond, George K Christophides

A de novo transcriptome of the Asian tiger mosquito, Aedes albopictus, to identify candidate transcripts for diapause preparation

Monica F Poelchau, Julie A Reynolds, David L Denlinger, Christine G Elsik, Peter A Armbruster

Genetic architecture of gene expression in ovine skeletal muscle

Lisette JA Kogelman, Keren Byrne, Tony Vuocolo, Nathan S Watson-Haigh, Haja N Kadarmideen, James W Kijas, Hutton V Oddy, Graham E Gardner, Cedric Gondro, Ross L Tellam

Defense mechanisms against herbivory in Picea: sequence evolution and expression regulation of gene family members in the phenylpropanoid pathway

Ilga Porth, Bj？rn Hamberger, Richard White, Kermit Ritland

Eukaryote DIRS1-like retrotransposons: an overview

Mathieu Piedno？l, Isabelle R Gon？alves, Dominique Higuet, Eric Bonnivard

Production of a reference transcriptome and transcriptomic database (PocilloporaBase) for the cauliflower coral, Pocillopora damicornis

Nikki Traylor-Knowles, Brian R Granger, Tristan J Lubinski, Jignesh R Parikh, Sara Garamszegi, Yu Xia, Jarrod A Marto, Les Kaufman, John R Finnerty

Genetic and epigenetic variations contributed by Alu retrotransposition

Alexandre de Andrade, Min Wang, Maria F Bonaldo, Hehuang Xie, Marcelo B Soares

Correlation of gene expression and protein production rate - a system wide study

Mikko Arvas, Tiina Pakula, Bart Smit, Jari Rautio, Heini Koivistoinen, Paula Jouhten, Erno Lindfors, Marilyn Wiebe, Merja Penttil？, Markku Saloheimo

Chromatin-driven de novo discovery of DNA binding motifs in the human malaria parasite

Elena Y Harris, Nadia Ponts, Karine G Le Roch, Stefano Lonardi

Ancient Pbx-Hox signatures define hundreds of vertebrate developmental enhancers

Hugo J Parker, Paul Piccinelli, Tatjana Sauka-Spengler, Marianne Bronner, Greg Elgar

Opposite GC skews at the 5' and 3' ends of genes in unicellular fungi

Malcolm A McLean, Itay Tirosh

Muscle wasting and the temporal gene expression pattern in a novel rat intensive care unit model

Monica Llano-Diez, Ann-Marie Gustafson, Carl Olsson, Hanna Goransson, Lars Larsson

Mining the Gene Wiki for functional genomic knowledge

Benjamin M Good, Douglas G Howe, Simon M Lin, Warren A Kibbe, Andrew I Su

Refinement of Bos taurus sequence assembly based on BAC-FISH experiments

Giulia Partipilo, Pietro D'Addabbo, Giovanni M Lacalandra, George E Liu, Mariano Rocchi

A quantitative account of genomic island acquisitions in prokaryotes

Tom E Roos, Mark WJ van Passel

Analysis of human meiotic recombination events with a parent-sibling tracing approach

Yun-Shien Lee, Angel Chao, Chun-Houh Chen, Tina Chou, Shih-Yee Wang, Tzu-Hao Wang

Identification of microRNA-mRNA modules using microarray data

Vivek Jayaswal, Mark Lutherborrow, David DF Ma, Yee H Yang

Taxonomically restricted genes are associated with the evolution of sociality in the honey bee

Brian R Johnson, Neil D Tsutsui

Cross species comparison of C/EBPα and PPARγ profiles in mouse and human adipocytes reveals interdependent retention of binding sites

S？ren F Schmidt, Mette J？rgensen, Yun Chen, Ronni Nielsen, Albin Sandelin, Susanne Mandrup

Composite transcriptome assembly of RNA-seq data in a sheep model for delayed bone healing

Marten J？ger, Claus-Eric Ott, Johannes Grünhagen, Jochen Hecht, Hanna Schell, Stefan Mundlos, Georg N Duda, Peter N Robinson, Jasmin Lienau

QTL mapping in white spruce: gene maps and genomic regions underlying adaptive traits across pedigrees, years and environments

Betty Pelgas, Jean Bousquet, Patrick G Meirmans, Kermit Ritland, Nathalie Isabel

Mitochondrial genomes and Doubly Uniparental Inheritance: new insights from Musculista senhousia sex-linked mitochondrial DNAs (Bivalvia Mytilidae)

Marco Passamonti, Andrea Ricci, Liliana Milani, Fabrizio Ghiselli

Histological and global gene expression analysis of the 'lactating' pigeon crop

Meagan J Gillespie, Volker R Haring, Kenneth A McColl, Paul Monaghan, John A Donald, Kevin R Nicholas, Robert J Moore, Tamsyn M Crowley

Differential gene expression profiling of human bone marrow-derived mesenchymal stem cells during adipogenic development

Adriane Menssen, Thomas H？upl, Michael Sittinger, Bruno Delorme, Pierre Charbord, Jochen Ringe

Computational study of associations between histone modification and protein-DNA binding in yeast genome by integrating diverse information

Junbai Wang

Genome-wide analysis of WRKY gene family in Cucumis sativus

Jian Ling, Weijie Jiang, Ying Zhang, Hongjun Yu, Zhenchuan Mao, Xingfang Gu, Sanwen Huang, Bingyan Xie

The aspartic proteinase family of three Phytophthora species

John Kay, Harold JG Meijer, Arjen ten Have, Jan AL van Kan

Genome-wide identification and expression profiling of auxin response factor (ARF) gene family in maize

Hongyan Xing, Ramesh N Pudake, Ganggang Guo, Guofang Xing, Zhaorong Hu, Yirong Zhang, Qixin Sun, Zhongfu Ni

De novo assembly and transcriptome analysis of five major tissues of Jatropha curcas L. using GS FLX titanium platform of 454 pyrosequencing

Purushothaman Natarajan, Madasamy Parani

Accurate and exact CNV identification from targeted high-throughput sequence data

Alex S Nord, Ming Lee, Mary-Claire King, Tom Walsh

Genes in the terminal regions of orthopoxvirus genomes experience adaptive molecular evolution

David J Esteban, Anne P Hutchinson

Analysis of common bean expressed sequence tags identifies sulfur metabolic pathways active in seed and sulfur-rich proteins highly expressed in the absence of phaseolin and major lectins

Fuqiang Yin, Agnieszka Pajak, Ralph Chapman, Andrew Sharpe, Shangzhi Huang, Frédéric Marsolais

Skin healing and scale regeneration in fed and unfed sea bream, Sparus auratus

Florbela A Vieira, Silvia F Gregório, Serena Ferraresso, Michael AS Thorne, Rita Costa, Massimo Milan, Luca Bargelloni, Melody S Clark, Adelino VM Canario, Deborah M Power

Ortho2ExpressMatrix—a web server that interprets cross-species gene expression data by gene family information

Thomas Meinel, Michal R Schweiger, Andreas H Ludewig, Ramu Chenna, Sylvia Krobitsch, Ralf Herwig

Characterization and genome sequencing of two Propionibacterium acnes phages displaying pseudolysogeny

Rolf Lood, Mattias Collin

Construction and evaluation of a whole genome microarray of Chlamydomonas reinhardtii

J？rg Toepel, Stefan P Albaum, Samuel Arvidsson, Alexander Goesmann, Marco la Russa, Kristin Rogge, Olaf Kruse

The association of DNA damage response and nucleotide level modulation with the antibacterial mechanism of the anti-folate drug Trimethoprim

Dipen P Sangurdekar, Zhigang Zhang, Arkady B Khodursky

BMP signaling components in embryonic transcriptomes of the hover fly Episyrphus balteatus (Syrphidae)

Steffen Lemke, Dionysios A Antonopoulos, Folker Meyer, Marc H Domanus, Urs Schmidt-Ott

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