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BMC Biophysics

ISSN Print: 2046-1682

ISSN Online:

Website: http://www.biomedcentral.com/bmcbiophys

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Effects of spermine NONOate and ATP on protein aggregation: light scattering evidences

Bassam Rasha,Digel Ilya,Hescheler Juergen,Artmann Ayseguel Temiz

A biophysical model for transcription factories

Canals-Hamann Ana Z,das Neves Ricardo,Reittie Joyce E,I？iguez Carlos

Clustering of HIV-1 Subtypes Based on gp120 V3 Loop electrostatic properties

Aliana López de Victoria, Chris A Kieslich, Apostolos K Rizos, Elias Krambovitis, Dimitrios Morikis

Protein dynamics at Eph receptor-ligand interfaces as revealed by crystallography, NMR and MD simulations

Haina Qin, Liangzhong Lim, Jianxing Song

APM_GUI: analyzing particle movement on the cell membrane and determining confinement

Silvia A Menchón, Mauricio G Martín, Carlos G Dotti

DelPhi: a comprehensive suite for DelPhi software and associated resources

Lin Li, Chuan Li, Subhra Sarkar, Jie Zhang, Shawn Witham, Zhe Zhang, Lin Wang, Nicholas Smith, Marharyta Petukh, Emil Alexov

Membrane microdomains emergence through non-homogeneous diffusion

Hedi A Soula, Antoine Coulon, Guillaume Beslon

Arbitrary protein？protein docking targets biologically relevant interfaces

Juliette Martin, Richard Lavery

Differences in adhesion and protrusion properties correlate with differences in migration speed under EGF stimulation

Yue Hou, Sarah Hedberg, Ian C Schneider

Molecular dynamics and mutational analysis of the catalytic and translocation cycle of RNA polymerase

Maria L Kireeva, Kristopher Opron, Steve A Seibold, Céline Domecq, Robert I Cukier, Benoit Coulombe, Mikhail Kashlev, Zachary F Burton

A minimal ligand binding pocket within a network of correlated mutations identified by multiple sequence and structural analysis of G protein coupled receptors

Subhodeep Moitra, Kalyan Tirupula, Judith Klein-Seetharaman, Chris Langmead

Fluorescence anisotropy of diphenylhexatriene and its cationic Trimethylamino derivative in liquid dipalmitoylphosphatidylcholine liposomes: opposing responses to isoflurane

Steven C Nelson, Steven K Neeley, Eric D Melonakos, John D Bell, David D Busath

Using default constraints of the spindle assembly checkpoint to estimate the associated chemical rates

Khanh Dao Duc, David Holcman

Can dietary fibre help provide safer food products for sufferers of gluten intolerance? A well-established biophysical probe may help towards providing an answer

M Samil K？k, Richard Gillis, Shirley Ang, David Lafond, Arthur S Tatham, Gary Adams, Stephen E Harding

Intrinsic thermodynamics of ethoxzolamide inhibitor binding to human carbonic anhydrase XIII

Lina Baranauskiene, Daumantas Matulis

Pulling chromatin apart: Unstacking or Unwrapping?

Victor Jean Marc,Zlatanova Jordanka,Barbi Maria,Mozziconacci Julien

Flexibility of EF-hand motifs: structural and thermodynamic studies of Calcium Binding Protein-1 from Entamoeba histolytica with Pb2+, Ba2+, and Sr2+

Kumar Shivesh,Ahmad Ejaz,Kumar Sanjeev,Khan Rizwan

Stochastic dynamics of virus capsid formation: direct versus hierarchical self-assembly

Baschek Johanna E,R Klein Heinrich C,Schwarz Ulrich S

Hierarchical super-structure identified by polarized light microscopy, electron microscopy and nanoindentation: Implications for the limits of biological control over the growth mode of abalone sea shells

Schneider Andreas S,Heiland Birgit,Peter Nicolas J,Guth Christina

Two-photon time-lapse microscopy of BODIPY-cholesterol reveals anomalous sterol diffusion in chinese hamster ovary cells

Lund Frederik W,Lomholt Michael A,Solanko Lukasz M,Bittman Robert

Physical constraints on the establishment of intracellular spatial gradients in bacteria

Tropini Carolina,Rabbani Naveed,Huang Kerwyn

Intracellular chemical gradients: morphing principle in bacteria

Endres Robert G

Effects of spermine NONOate and ATP on the thermal stability of hemoglobin

Bassam Rasha,Hescheler Juergen,Temiz-Artmann Ayseguel,Artmann Gerhard M

Molecular dynamics simulations on aqueous two-phase systems - Single PEG-molecules in solution

Oelmeier Stefan A,Dismer Florian,Hubbuch Jürgen

Stability of double-stranded oligonucleotide DNA with a bulged loop: a microarray study

Christian Trapp, Marc Schenkelberger, Albrecht Ott

Characterizing low affinity epibatidine binding to α4β2 nicotinic acetylcholine receptors with ligand depletion and nonspecific binding

Alexandra M Person, Gregg B Wells

Introduction of non-linear elasticity models for characterization of shape and deformation statistics: application to contractility assessment of isolated adult cardiocytes

Carlos Bazan, Trevor Hawkins, David Torres-Barba, Peter Blomgren, Paul Paolini

Brownian dynamics simulation of analytical ultracentrifugation experiments

AI Díez, A Ortega, J Garcia de la Tore

Diffusion of hydrophobin proteins in solution and interactions with a graphite surface

Paolo Mereghetti, Rebecca C Wade

Probabilistic modeling and analysis of the effects of extra-cellular matrix density on the sizes, shapes, and locations of integrin clusters in adherent cells

Erik S Welf, Ulhas P Naik, Babatunde A Ogunnaike

Detection and differentiation of bacterial spores in a mineral matrix by Fourier transform infrared spectroscopy (FTIR) and chemometrical data treatment

Andrea Brandes Ammann, Helmut Brandl

New horizons in Biophysics

Elizabeth C Moylan

Diffusion and association processes in biological systems: theory, computation and experiment

Paolo Mereghetti, Daria Kokh, J Andrew McCammon, Rebecca C Wade

Diffusion in crowded biological environments: applications of Brownian dynamics

Maciej D？ugosz, Joanna Trylska

Gated Diffusion-controlled Reactions

J Andrew McCammon

A solvable model for the diffusion and reaction of neurotransmitters in a synaptic junction

Jorge L Barreda, Huan-Xiang Zhou

Spindles and active vortices in a model of confined filament-motor mixtures

David A Head, WJ Briels, Gerhard Gompper

Lipid recognition propensities of amino acids in membrane proteins from atomic resolution data

Mizuki Morita, AVSK Katta, Shandar Ahmad, Takaharu Mori, Yuji Sugita, Kenji Mizuguchi

A Bayesian method for inferring quantitative information from FRET data

Catherine A Lichten, Peter S Swain

Thermotropic phase behavior and headgroup interactions of the nonbilayer lipids phosphatidylethanolamine and monogalactosyldiacylglycerol in the dry state

Antoaneta V Popova, Dirk K Hincha

Sensing the Heat Stress by Mammalian Cells

Jordan Cates, Garrett C Graham, Natalie Omattage, Elizabeth Pavesich, Ian Setliff, Jack Shaw, Caitlin Smith, Ovidiu Lipan

An upper limit for macromolecular crowding effects

Andrew C Miklos, Conggang Li, Courtney D Sorrell, L Andrew Lyon, Gary J Pielak

Many-particle Brownian and Langevin Dynamics Simulations with the Brownmove package

Tihamér Geyer

Hierarchies in eukaryotic genome organization: Insights from polymer theory and simulations

Balaji VS Iyer, Martin Kenward, Gaurav Arya

Mechanism of PhosphoThreonine/Serine Recognition and Specificity for Modular Domains from All-atom Molecular Dynamics

Yu-ming M Huang, Chia-en A Chang

Geometric constrains for detecting short actin filaments by cryogenic electron tomography

Mikhail Kudryashev, Simone Lepper, Wolfgang Baumeister, Marek Cyrklaff, Friedrich Frischknecht

Two-color STED microscopy reveals different degrees of colocalization between hexokinase-I and the three human VDAC isoforms

Daniel Neumann, Johanna Bückers, Lars Kastrup, Stefan W Hell, Stefan Jakobs

Kinetics of diffusion-controlled enzymatic reactions with charged substrates

Benzhuo Lu, J Andrew McCammon

Tubulohelical membrane arrays: From the initial observation to the elucidation of nanophysical properties and cellular function

Siegfried Reipert, Józefa Wesierska-Gadek, Sebastian Wienerroither

Nanoscopy of the cellular response to hypoxia by means of fluorescence resonance energy transfer (FRET) and new FRET software

Christoph Wotzlaw, Silke Gneuss, Rebecca Konietzny, Joachim Fandrey

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