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GigaScience

ISSN Print: 2047-217X

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Website: http://www.gigasciencejournal.com

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Crowdsourcing genomic analyses of ash and ash dieback – power to the people

Dan MacLean, Kentaro Yoshida, Anne Edwards, Lisa Crossman, Bernardo Clavijo, Matt Clark, David Swarbreck, Matthew Bashton, Patrick Chapman, Mark Gijzen, Mario Caccamo, Allan Downie, Sophien Kamoun, Diane GO Saunders

Peering into peer-review at GigaScience

Scott C Edmunds

A call for an international network of genomic observatories (GOs)

Neil Davies, Chris Meyer, Jack A Gilbert, Linda Amaral-Zettler, John Deck, Mesude Bicak, Philippe Rocca-Serra, Susanna Assunta-Sansone, Kathy Willis, Dawn Field

The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome

Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Rideout, Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle, Folker Meyer, Rob Knight, J Caporaso

Badomics words and the power and peril of the ome-meme

Jonathan A Eisen

Large and linked in scientific publishing

Laurie Goodman, Scott C Edmunds, Alexandra T Basford

GigaDB: announcing the GigaScience database

Tam P Sneddon, Peter Li, Scott C Edmunds

Resources for methylome analysis suitable for gene knockout studies of potential epigenome modifiers

Gareth A Wilson, Pawandeep Dhami, Andrew Feber, Daniel Cortázar, Yuka Suzuki, Reiner Schulz, Primo Sch？r, Stephan Beck

The future of DNA sequence archiving

Guy Cochrane, Charles E Cook, Ewan Birney

SOAPdenovo2: an empirically improved memory-efficient short-read de novo assembler

Ruibang Luo, Binghang Liu, Yinlong Xie, Zhenyu Li, Weihua Huang, Jianying Yuan, Guangzhu He, Yanxiang Chen, Qi Pan, Yunjie Liu, Jingbo Tang, Gengxiong Wu, Hao Zhang, Yujian Shi, Yong Liu, Chang Yu, Bo Wang, Yao Lu, Changlei Han, David W Cheung, Siu-Ming Yiu, Shaoliang Peng, Zhu Xiaoqian, Guangming Liu, Xiangke Liao, Yingrui Li, Huanming Yang, Jian Wang, Tak-Wah Lam, Jun Wang

A genome blogger manifesto

Manuel Corpas

The sequence and analysis of a Chinese pig genome

Xiaodong Fang, Yulian Mou, Zhiyong Huang, Yong Li, Lijuan Han, Yanfeng Zhang, Yue Feng, Yuanxin Chen, Xuanting Jiang, Wei Zhao, Xiaoqing Sun, Zhiqiang Xiong, Lan Yang, Huan Liu, Dingding Fan, Likai Mao, Lijie Ren, Chuxin Liu, Juan Wang, Kui Li, Guangbiao Wang, Shulin Yang, Liangxue Lai, Guojie Zhang, Yingrui Li, Jun Wang, Lars Bolund, Huanming Yang, Jian Wang, Shutang Feng, Songgang Li, Yutao Du

Correction: Genome empowerment for the Puerto Rican parrot – Amazona vittata

Stephen J O’Brien

A locally funded Puerto Rican parrot (Amazona vittata) genome sequencing project increases avian data and advances young researcher education

Taras K Oleksyk, Jean-Francois Pombert, Daniel Siu, Anyimilehidi Mazo-Vargas, Brian Ramos, Wilfried Guiblet, Yashira Afanador, Christina T Ruiz-Rodriguez, Michael L Nickerson, David M Logue, Michael Dean, Luis Figueroa, Ricardo Valentin, Juan-Carlos Martinez-Cruzado

Genome empowerment for the Puerto Rican parrot – Amazona vittata

Stephen J O’Brien

Single-cell sequencing analysis characterizes common and cell-lineage-specific mutations in a muscle-invasive bladder cancer

Yingrui Li, Xun Xu, Luting Song, Yong Hou, Zesong Li, Shirley Tsang, Fuqiang Li, Kate Im, Kui Wu, Hanjie Wu, Xiaofei Ye, Guibo Li, Linlin Wang, Bo Zhang, Jie Liang, Wei Xie, Renhua Wu, Hui Jiang, Xiao Liu, Chang Yu, Hancheng Zheng, Min Jian, Liping Nie, Lei Wan, Min Shi, Xiaojuan Sun, Aifa Tang, Guangwu Guo, Yaoting Gui, Zhiming Cai, Jingxiang Li, Wen Wang, Zuhong Lu, Xiuqing Zhang, Lars Bolund, Karsten Kristiansen, Jian Wang, Huanming Yang, Michael Dean, Jun Wang

On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities

Susanna-Assunta Sansone, Philippe Rocca-Serra

Data sharing and publishing in the field of neuroimaging

Janis L Breeze, Jean-Baptiste Poline, David N Kennedy

Tissue sampling methods and standards for vertebrate genomics

Pamela BY Wong, Edward O Wiley, Warren E Johnson, Oliver A Ryder, Stephen J O’Brien, David Haussler, Klaus-Peter Koepfli, Marlys L Houck, Polina Perelman, Gabriela Mastromonaco, Andrew C Bentley, Byrappa Venkatesh, Ya-ping Zhang, Robert W Murphy, G10KCOS

The rise of a digital immune system

Michael C Schatz, Adam M Phillippy

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