Genome Biology - oalib

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Genome Biology

ISSN Print: 1465-6906

ISSN Online:

主页: http://genomebiology.com

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Translation controlled

Graham D Pavitt, Mark P Ashe

Uncovering trends in gene naming

Michael R Seringhaus, Philip D Cayting, Mark B Gerstein

The Amborella genome: an evolutionary reference for plant biology

Douglas E Soltis, Victor A Albert, Jim Leebens-Mack, Jeffrey D Palmer, Rod A Wing, Claude W dePamphilis, Hong Ma, John E Carlson, Naomi Altman, Sangtae Kim, P Kerr Wall, Andrea Zuccolo, Pamela S Soltis

Computational models in systems biology

Laurence Loewe, Jane Hillston

Assaying the regulatory potential of mammalian conserved non-coding sequences in human cells

Catia Attanasio, Alexandre Reymond, Richard Humbert, Robert Lyle, Michael S Kuehn, Shane Neph, Peter J Sabo, Jeff Goldy, Molly Weaver, Andrew Haydock, Kristin Lee, Michael Dorschner, Emmanouil T Dermitzakis, Stylianos E Antonarakis, John A Stamatoyannopoulos

Rapid identification of PAX2/5/8 direct downstream targets in the otic vesicle by combinatorial use of bioinformatics tools

Mirana Ramialison, Baubak Bajoghli, Narges Aghaallaei, Laurence Ettwiller, Sylvain Gaudan, Beate Wittbrodt, Thomas Czerny, Joachim Wittbrodt

Bacterial networking

Kathleen Marchal, Sigrid CJ De Keersmaecker

Genome adaptation to chemical stress: clues from comparative transcriptomics in Saccharomyces cerevisiae and Candida glabrata

Ga？lle Lelandais, Véronique Tanty, Colette Geneix, Catherine Etchebest, Claude Jacq, Frédéric Devaux

Lymphatic endothelial differentiation: start out with Sox - carry on with Prox

Friedemann Kiefer, Ralf H Adams

Comparative sequence analyses reveal sites of ancestral chromosomal fusions in the Indian muntjac genome

Vicky Tsipouri, Mary G Schueler, Sufen Hu, NISC Comparative Sequencing Program, Amalia Dutra, Evgenia Pak, Harold Riethman, Eric D Green

Functional architecture of Escherichia coli: new insights provided by a natural decomposition approach

Julio A Freyre-González, José A Alonso-Pavón, Luis G Trevi？o-Quintanilla, Julio Collado-Vides

Divergence in cis-regulatory networks: taking the 'species' out of cross-species analysis

Robert P Zinzen, Eileen EM Furlong

Core promoters are predicted by their distinct physicochemical properties in the genome of Plasmodium falciparum

Kevin Brick, Junichi Watanabe, Elisabetta Pizzi

The wisdom, and madness, of crowds

Gregory A Petsko

Encapsulated in silica: genome, proteome and physiology of the thermophilic bacterium Anoxybacillus flavithermus WK1

Jimmy H Saw, Bruce W Mountain, Lu Feng, Marina V Omelchenko, Shaobin Hou, Jennifer A Saito, Matthew B Stott, Dan Li, Guang Zhao, Junli Wu, Michael Y Galperin, Eugene V Koonin, Kira S Makarova, Yuri I Wolf, Daniel J Rigden, Peter F Dunfield, Lei Wang, Maqsudul Alam

Analysis of mammalian gene batteries reveals both stable ancestral cores and highly dynamic regulatory sequences

Laurence Ettwiller, Aidan Budd, Fran？ois Spitz, Joachim Wittbrodt

Evolutionary-new centromeres preferentially emerge within gene deserts

Mariana Lomiento, Zhaoshi Jiang, Pietro D'Addabbo, Evan E Eichler, Mariano Rocchi

Chromatin Central: towards the comparative proteome by accurate mapping of the yeast proteomic environment

Anna Shevchenko, Assen Roguev, Daniel Schaft, Luke Buchanan, Bianca Habermann, Cagri Sakalar, Henrik Thomas, Nevan J Krogan, Andrej Shevchenko, A Francis Stewart

Characterization of the differentially methylated region of the Impact gene that exhibits Glires-specific imprinting

Kohji Okamura, Richard F Wintle, Stephen W Scherer

Bioinformatics: alive and kicking

Lincoln D Stein

Egr1 regulates the coordinated expression of numerous EGF receptor target genes as identified by ChIP-on-chip

Shilpi Arora, Yipeng Wang, Zhenyu Jia, Saynur Vardar-Sengul, Ayla Munawar, Kutbuddin S Doctor, Michael Birrer, Michael McClelland, Eileen Adamson, Dan Mercola

Comparative phosphoproteomics reveals evolutionary and functional conservation of phosphorylation across eukaryotes

Jos Boekhorst, Bas van Breukelen, Albert JR Heck, Berend Snel

Having an impact (factor)

Gregory A Petsko

The signature of long-standing balancing selection at the human defensin β-1 promoter

Rachele Cagliani, Matteo Fumagalli, Stefania Riva, Uberto Pozzoli, Giacomo P Comi, Giorgia Menozzi, Nereo Bresolin, Manuela Sironi

Integrating systems biology with clinical research

Rainer Pepperkok, Stefan Wiemann

Mathematical models in mammalian cell biology

Hanspeter Herzel, Nils Blüthgen

Asymmetric histone modifications between the original and derived loci of human segmental duplications

Deyou Zheng

New insights into tumor suppressors

Michelle Marques, Alejandro Sweet-Cordero

DNA replication can still spring surprises

Heather L Hendrickson

The telosome/shelterin complex and its functions

Huawei Xin, Dan Liu, Zhou Songyang

Reduced-representation methylation mapping

Jeffrey A Jeddeloh, John M Greally, Oliver J Rando

Isolated populations and complex disease gene identification

Kati Kristiansson, Jussi Naukkarinen, Leena Peltonen

Annotating genomes with massive-scale RNA sequencing

France Denoeud, Jean-Marc Aury, Corinne Da Silva, Benjamin Noel, Odile Rogier, Massimo Delledonne, Michele Morgante, Giorgio Valle, Patrick Wincker, Claude Scarpelli, Olivier Jaillon, Fran？ois Artiguenave

Wormnet: a crystal ball for Caenorhabditis elegans

Stephen E Von Stetina, Susan E Mango

Does a new polyomavirus contribute to Merkel cell carcinoma?

Kelly M Garneski, James A DeCaprio, Paul Nghiem

The AID/APOBEC family of nucleic acid mutators

Silvestro G Conticello

Molecular evolution of neuropeptides in the genus Drosophila

Christian Wegener, Anton Gorbashov

Evolutionary rate and gene expression across different brain regions

Tamir Tuller, Martin Kupiec, Eytan Ruppin

Model-driven analysis of experimentally determined growth phenotypes for 465 yeast gene deletion mutants under 16 different conditions

Evan S Snitkin, Aimée M Dudley, Daniel M Janse, Kaisheen Wong, George M Church, Daniel Segrè

MotifCluster: an interactive online tool for clustering and visualizing sequences using shared motifs

Micah Hamady, Jeremy Widmann, Shelley D Copley, Rob Knight

Gene regulation and signal transduction in the immune system

Tiffany Horng, Shalini Oberdoerffer, Anjana Rao

Taxonomic distribution of large DNA viruses in the sea

Adam Monier, Jean-Michel Claverie, Hiroyuki Ogata

Identification of motifs that function in the splicing of non-canonical introns

Jill I Murray, Rodger B Voelker, Kristy L Henscheid, M Bryan Warf, J Andrew Berglund

Network-based approaches for linking metabolism with environment

Sarath Janga, M Madan Babu

A new era for proteomics research?

Mathias Uhlen

From sequence to structure to networks

Nir Yosef, Lukas K？ll

Evidence for common short natural trans sense-antisense pairing between transcripts from protein coding genes

Ping Wang, Shanye Yin, Zhenguo Zhang, Dedong Xin, Landian Hu, Xiangyin Kong, Laurence D Hurst

Do we use the appropriate controls for the identification of informative methylation markers for early cancer detection?

Yasser Riazalhosseini, J？rg D Hoheisel

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