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Mobile DNA

ISSN Print: 1759-8753

ISSN Online:

Website: http://www.mobilednajournal.com

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Reviewer acknowledgement 2013

Craig Nancy L,Eikbush Thomas H,Voytas Daniel F

NucBase, an easy to use read mapper for small RNAs

Dufourt Jeremy,Pouchin Pierre,Peyret Pierre,Brasset Emilie

The site-specific integration reaction of Listeria phage A118 integrase, a serine recombinase

Mandali Sridhar,Dhar Gautam,Avliyakulov Nuraly K,Haykinson Michael J

Striking structural dynamism and nucleotide sequence variation of the transposon Galileo in the genome of Drosophila mojavensis

Marzo Mar,Bello Xabier,Puig Marta,Maside Xulio

Evolution of a transposon in Daphnia hybrid genomes

Vergilino Roland,Elliott Tyler A,Desjardins-Proulx Philippe,Crease Teresa J

Copy number variation of ribosomal DNA and Pokey transposons in natural populations of Daphnia

Shannon HC Eagle, Teresa J Crease

How does selfing affect the dynamics of selfish transposable elements?

Thibaud S Boutin, Arnaud Le Rouzic, Pierre Capy

Identification of basepairs within Tn5 termini that are critical sfor H-NS binding to the transpososome and regulation of Tn5 transposition

Crystal R Whitfield, Brian H Shilton, David B Haniford

Alu expression in human cell lines and their retrotranspositional potential

Andrew J Oler, Stephen Traina-Dorge, Rebecca S Derbes, Donatella Canella, Brad R Cairns, Astrid M Engel

The predominantly selfing plant Arabidopsis thaliana experienced a recent reduction in transposable element abundance compared to its outcrossing relative Arabidopsis lyrata

Nicole de la Chaux, Takashi Tsuchimatsu, Kentaro K Shimizu, Andreas Wagner

R2 and R2/R1 hybrid non-autonomous retrotransposons derived by internal deletions of full-length elements

Danna G. Eickbush, Thomas H. Eickbush

Orangutan Alu quiescence reveals possible source element: support for ancient backseat drivers

Jerilyn A Walker, Miriam K Konkel, Brygg Ullmer, Christopher P Monceaux, Oliver A Ryder, Robert Hubley, Arian FA Smit, Mark A Batzer

Protein-DNA interactions define the mechanistic aspects of circle formation and insertion reactions in IS2 transposition

Leslie A Lewis, Mekbib Astatke, Peter T Umekubo, Shaheen Alvi, Robert Saby, Jehan Afrose, Pedro H Oliveira, Gabriel A Monteiro, Duarte MF Prazeres

C-GATE - catalogue of genes affected by transposable elements

Rita Rebollo, Sharareh Farivar, Dixie L. Mager

Towards a more accurate annotation of tyrosine-based site-specific recombinases in bacterial genomes

Rob Van Houdt, Raphael Leplae, Max Mergeay, Ariane Toussaint, Gipsi Lima-Mendez

Insertion site preference of Mu, Tn5, and Tn7 transposons

Brian Green, Christiane Bouchier, Cécile Fairhead, Nancy L Craig, Brendan P Cormack

Genomic impact of eukaryotic transposable elements

Arkhipova Irina R,Batzer Mark A,Brosius Juergen,Feschotte Cédric

Host co-factors of the retrovirus-like transposon Ty1

Risler Jenni K,Kenny Alison E,Palumbo Ryan J,Gamache Eric R

Cell type-specific termination of transcription by transposable element sequences

Conley Andrew B,Jordan I

International Congress on Transposable Elements (ICTE) 2012 in Saint Malo and the sea of TE stories

Ainouche Abdelkader,Bétermier Mireille,Chandler Mick,Cordaux Richard

Horizontal transfers of Mariner transposons between mammals and insects

Oliveira Sarah G,Bao Weidong,Martins Cesar,Jurka Jerzy

Strong purifying selection in endogenous retroviruses in the saltwater crocodile (Crocodylus porosus) in the Northern Territory of Australia

Chong Amanda Yoon-Yee,Atkinson Sarah Jane,Isberg Sally,Gongora Jaime

LTRsift: a graphical user interface for semi-automatic classification and postprocessing of de novo detected LTR retrotransposons

Steinbiss Sascha,Kastens Sascha,Kurtz Stefan

Review of Mobile DNA - finding treasure in junk by Haig H Kazazian

Feschotte Cédric

Mar, a MITE family of hAT transposons in Drosophila

Deprá Maríndia,Ludwig Adriana,Valente Vera LS,Loreto Elgion LS

The Mu story: how a maverick phage moved the field forward

Harshey Rasika M

Two large-scale analyses of Ty1 LTR-retrotransposon de novo insertion events indicate that Ty1 targets nucleosomal DNA near the H2A/H2B interface

Bridier-Nahmias Antoine,Lesage Pascale

DNA binding activities of the Herves transposase from the mosquito Anopheles gambiae

Amandeep S Kahlon, Robert H Hice, David A O'Brochta, Peter W Atkinson

A revised nomenclature for transcribed human endogenous retroviral loci

Jens Mayer, Jonas Blomberg, Ruth L Seal

Prevalence of SOS-mediated control of integron integrase expression as an adaptive trait of chromosomal and mobile integrons

Guillaume Cambray, Neus Sanchez-Alberola, Susana Campoy, émilie Guerin, Sandra Da Re, Bruno González-Zorn, Marie-Cécile Ploy, Jordi Barbé, Didier Mazel, Ivan Erill

Characterization of a synthetic human LINE-1 retrotransposon ORFeus-Hs

Wenfeng An, Lixin Dai, Anna Niewiadomska, Alper Yetil, Kathryn A O'Donnell, Jeffrey S Han, Jef D Boeke

Characterization and potential functional significance of human-chimpanzee large INDEL variation

Nalini Polavarapu, Gaurav Arora, Vinay K Mittal, John F McDonald

Crypton transposons: identification of new diverse families and ancient domestication events

Kenji K Kojima, Jerzy Jurka

Mobile DNA and the TE-Thrust hypothesis: supporting evidence from the primates

Keith R Oliver, Wayne K Greene

Plant centromeric retrotransposons: a structural and cytogenetic perspective

Pavel Neumann, Alice Navrátilová, Andrea Koblí？ková, Eduard Kejnovsky, Eva H？ibová, Roman Hobza, Alex Widmer, Jaroslav Dole？el, Ji？í Macas

Reverse transcription of the pFOXC mitochondrial retroplasmids of Fusarium oxysporum is protein primed

Jeffrey T Galligan, Sarah E Marchetti, John C Kennell

Alu pair exclusions in the human genome

George W Cook, Miriam K Konkel, James D Major, Jerilyn A Walker, Kyudong Han, Mark A Batzer

Reliable transgene-independent method for determining Sleeping Beauty transposon copy numbers

Orsolya Kolacsek, Virág Krízsik, Anita Schamberger, Zsuzsa Erdei, ágota Apáti, Gy？rgy Várady, Lajos Mátés, Zsuzsanna Izsvák, Zoltán Ivics, Balázs Sarkadi, Tamás I Orbán

Soluble expression, purification and characterization of the full length IS2 Transposase

Leslie A Lewis, Mekbib Astatke, Peter T Umekubo, Shaheen Alvi, Robert Saby, Jehan Afrose

Remobilization of Sleeping Beauty transposons in the germline of Xenopus tropicalis

Donald A Yergeau, Clair M Kelley, Emin Kuliyev, Haiqing Zhu, Michelle R Johnson Hamlet, Amy K Sater, Dan E Wells, Paul E Mead

Retrotransposition of R2 elements in somatic nuclei during the early development of Drosophila

Michael T Eickbush, Thomas H Eickbush

Effect of attC structure on cassette excision by integron integrases

André Larouche, Paul H Roy

Universal platform for quantitative analysis of DNA transposition

Maria I Pajunen, Tiina S Rasila, Lotta J Happonen, Arja Lamberg, Saija Haapa-Paananen, Saija Kiljunen, Harri Savilahti

Feedback inhibition of L1 and alu retrotransposition through altered double strand break repair kinetics

Nicholas A Wallace, Victoria P Belancio, Zach Faber, Prescott Deininger

A subtelomeric non-LTR retrotransposon Hebe in the bdelloid rotifer Adineta vaga is subject to inactivation by deletions but not 5' truncations

Eugene A Gladyshev, Irina R Arkhipova

Creation of a novel telomere-cutting endonuclease based on the EN domain of telomere-specific non-long terminal repeat retrotransposon, TRAS1

Kazutoshi Yoshitake, Hideyuki Aoyagi, Haruhiko Fujiwara

Transposition of the Tourist-MITE mPing in yeast: an assay that retains key features of catalysis by the class 2 PIF/Harbinger superfamily

C Nathan Hancock, Feng Zhang, Susan R Wessler

Ginger DNA transposons in eukaryotes and their evolutionary relationships with long terminal repeat retrotransposons

Weidong Bao, Vladimir V Kapitonov, Jerzy Jurka

Transposable elements in a marginal plant population: temporal fluctuations provide new insights into genome evolution of wild diploid wheat

Alexander Belyayev, Ruslan Kalendar, Leonid Brodsky, Eviatar Nevo, Alan H Schulman, Olga Raskina

Heads or tails: L1 insertion-associated 5' homopolymeric sequences

Thomas J Meyer, Deepa Srikanta, Erin M Conlin, Mark A Batzer

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