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Journal of Clinical Bioinformatics

ISSN Print: 2043-9113

ISSN Online:

Website: http://www.jclinbioinformatics.com

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Cystic fibrosis testing in a referral laboratory: results and lessons from a six-year period

Ridge Perry G,Miller Christine,Bayrak-Toydemir Pinar,Best D Hunter

A ceRNA analysis on LMNA gene focusing on the Hutchinson-Gilford progeria syndrome

Arancio Walter,Giordano Carla,Pizzolanti Giuseppe

Availability of MudPIT data for classification of biological samples

Silvestre Dario,Zoppis Italo,Brambilla Francesca,Bellettato Valeria

Brain cancer prognosis: independent validation of a clinical bioinformatics approach

Raffaele Fronza, Michele Tramonti, William R Atchley, Christine Nardini

A distinct metabolic signature predicts development of fasting plasma glucose

Manuela Hische, Abdelhalim Larhlimi, Franziska Schwarz, Antje Fischer-Rosinsky, Thomas Bobbert, Anke Assmann, Gareth S Catchpole, Andreas FH Pfeiffer, Lothar Willmitzer, Joachim Selbig, Joachim Spranger

A network flow approach to predict drug targets from microarray data, disease genes and interactome network - case study on prostate cancer

Shih-Heng Yeh, Hsiang-Yuan Yeh, Von-Wun Soo

A dynamic model for tumour growth and metastasis formation

Volker Haustein, Udo Schumacher

Effects of autoclaving and high pressure on allergenicity of hazelnut proteins

Elena Lopez, Carmen Cuadrado, Carmen Burbano, Maria A Jimenez, Julia Rodriguez, Jesus F Crespo

Splitting random forest (SRF) for determining compact sets of genes that distinguish between cancer subtypes

Xiaowei Guan, Mark R Chance, Jill S Barnholtz-Sloan

Monte Carlo simulation of the Spearman-Kaerber TCID50

Niels H Wulff, Maria Tzatzaris, Philip J Young

Gene expression profiling of peripheral blood mononuclear cells in the setting of peripheral arterial disease

Rizwan Masud, Khader Shameer, Aparna Dhar, Keyue Ding, Iftikhar J Kullo

Bioinformatics as a driver, not a passenger, of translational biomedical research: Perspectives from the 6th Benelux bioinformatics conference

Francisco J Azuaje, Micha？l Heymann, Anne-Marie Ternes, Anke Wienecke-Baldacchino, Daniel Struck, Danièle Moes, Reinhard Schneider

Functional repertoire, molecular pathways and diseases associated with 3D domain swapping in the human proteome

Khader Shameer, Ramanathan Sowdhamini

Analysis of the salivary microbiome using culture-independent techniques

Vladimir Lazarevic, Katrine Whiteson, Nadia Ga？a, Yann Gizard, David Hernandez, Laurent Farinelli, Magne ？ster？s, Patrice Fran？ois, Jacques Schrenzel

An eUtils toolset and its use for creating a pipeline to link genomics and proteomics analyses to domain-specific biomedical literature

Prakash M Nadkarni, Chirag R Parikh

A comparative analysis of protein targets of withdrawn cardiovascular drugs in human and mouse

Yuqi Zhao, Yanjie Wang, Jingfei Huang, Jingwen Wang

High-prevalence and broad spectrum of Cell Adhesion and Extracellular Matrix gene pathway mutations in epithelial ovarian cancer

Rafii Arash,Halabi Najeeb M,Malek Joel A

mCOPA: analysis of heterogeneous features in cancer expression data

Wang Chenwei,Taciroglu Alperen,Maetschke Stefan R,Nelson Colleen C

Modeling autism: a systems biology approach

Randolph-Gips Mary,Srinivasan Pramila

Cancer classification: Mutual information, target network and strategies of therapy

Hsu Wen-Chin,Liu Chan-Cheng,Chang Fu,Chen Su-Shing

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection

Stubbs Andrew,McClellan Elizabeth A,Horsman Sebastiaan,Hiltemann Saskia D

A model-based statistic for detecting molecular markers associated with complex survival patterns in early-stage cancer

Bro？t Philippe,Moreau Thierry

The H-factor as a novel quality metric for homology modeling

di Luccio Eric,Koehl Patrice

Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays

Srinivasan Subhashini,Patil Arun H,Verma Mohit,Bingham Jonathan L

PROGmiR: a tool for identifying prognostic miRNA biomarkers in multiple cancers using publicly available data

Goswami Chirayu Pankaj,Nakshatri Harikrishna

Diagnostic markers based on a computational model of lipoprotein metabolism

Dani？l B van Schalkwijk, Ben van Ommen, Andreas P Freidig, Jan van der Greef, Albert A de Graaf

Proteome analysis of bronchoalveolar lavage in pulmonary langerhans cell histiocytosis

Claudia Landi, Elena Bargagli, Barbara Magi, Antje Prasse, Joachim Muller-Quernheim, Luca Bini, Paola Rottoli

Characterization of uncertainty in the classification of multivariate assays: application to PAM50 centroid-based genomic predictors for breast cancer treatment plans

Mark TW Ebbert, Roy RL Bastien, Kenneth M Boucher, Miguel Martín, Eva Carrasco, Rosalía Caballero, Inge J Stijleman, Philip S Bernard, Julio C Facelli

A base-calling algorithm for Tm-shifted melting curve SNP assay

Kung-Hao Liang, Jun-Jeng Fen, Hsien-Hsun Chang, Hsei-Wei Wang, Yuchi Hwang

RNA interference against polo-like kinase-1 in advanced non-small cell lung cancers

Eri Kawata, Eishi Ashihara, Taira Maekawa

Discovering and validating unknown phospho-sites from p38 and HuR protein kinases in vitro by Phosphoproteomic and Bioinformatic tools

Elena López, Isabel López, Julia Sequí, Antonio Ferreira

Functional similarity analysis of human virus-encoded miRNAs

Guangchuang Yu, Qing-Yu He

BioBanking - The Holy Grail of novel drug and diagnostic developments?

Gy？rgy Marko-Varga

Frontiers of Oncology: Biobanking Resources for the 21st Century

Jill Barnholtz-Sloan, Mark R Chance

FISH Oracle: a web server for flexible visualization of DNA copy number data in a genomic context

Malte Mader, Ronald Simon, Sascha Steinbiss, Stefan Kurtz

Quantitative analysis of histone exchange for transcriptionally active chromatin

Stephanie D Byrum, Sean D Taverna, Alan J Tackett

Automated ERCC1 immunochemistry on hybrid cytology/tissue microarray of malignant effusions: evaluation of antibodies 8F1 and D-10

Alex Soltermann, Sandra Kilgus-Hawelski, Silvia Behnke, Martina Storz, Holger Moch, Beata Bode

Role of clinical bioinformatics in the development of network-based Biomarkers

Xiangdong Wang

Dynamic gene network reconstruction from gene expression data in mice after influenza A (H1N1) infection

Konstantina Dimitrakopoulou, Charalampos Tsimpouris, George Papadopoulos, Claudia Pommerenke, Esther Wilk, Kyriakos N Sgarbas, Klaus Schughart, Anastasios Bezerianos

Biobank resources for future patient care: developments, principles and concepts

ákos Végvári, Charlotte Welinder, Henrik Lindberg, Thomas E Fehniger, Gy？rgy Marko-Varga

Metabonomics-based omics study and atherosclerosis

Duo-jiao Wu, Bi-jun Zhu, Xiang-dong Wang

Mathematical morphology-based approach to the enhancement of morphological features in medical images

Yoshitaka Kimori

Clinical data integration of distributed data sources using Health Level Seven (HL7) v3-RIM mapping

Teeradache Viangteeravat, Matthew N Anyanwu, Venkateswara Nagisetty, Emin Kuscu, Mark Sakauye, Duojiao Wu

Profiling the human response to physical exercise: a computational strategy for the identification and kinetic analysis of metabolic biomarkers

Michael Netzer, Klaus M Weinberger, Michael Handler, Michael Seger, Xiaocong Fang, Karl G Kugler, Armin Graber, Christian Baumgartner

Elucidating the identity of resistance mechanisms to prednisolone exposure in acute lymphoblastic leukemia cells through transcriptomic analysis: A computational approach

Emmanouil G Sifakis, George I Lambrou, Andriana Prentza, Spiros Vlahopoulos, Dimitris Koutsouris, Fotini Tzortzatou-Stathopoulou, Aristotelis A Chatziioannou

Technical phosphoproteomic and bioinformatic tools useful in cancer research

Elena López, Jan-Jaap Wesselink, Isabel López, Jesús Mendieta, Paulino Gómez-Puertas, Sarbelio Mu？oz

Significance of bioinformatics in research of chronic obstructive pulmonary disease

Hong Chen, Xiangdong Wang

The NFI-Regulome Database: A tool for annotation and analysis of control regions of genes regulated by Nuclear Factor I transcription factors

Richard M Gronostajski, Joseph Guaneri, Dong Lee, Steven M Gallo

Clinical bioinformatics: a new emerging science

Xiangdong Wang, Lance Liotta

Moving towards high density clinical signature studies with a human proteome catalogue developing multiplexing mass spectrometry assay panels

Melinda Rezeli, ákos Végvári, Thomas E Fehniger, Thomas Laurell, Gy？rgy Marko-Varga

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