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Clinical Proteomics

ISSN Print: 1559-0275

ISSN Online:

Website: http://www.clinicalproteomicsjournal.com

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Proteomic analysis of ERK1/2-mediated human sickle red blood cell membrane protein phosphorylation

Erik J Soderblom, J Will Thompson, Evan A Schwartz, Edward Chiou, Laura G Dubois, M Arthur Moseley, Rahima Zennadi

Quantitative proteomic analysis of amniocytes reveals potentially dysregulated molecular networks in down syndrome

Chan-Kyung J Cho, Andrei P Drabovich, George S Karagiannis, Eduardo Martínez-Morillo, Shawn Dason, Apostolos Dimitromanolakis, Eleftherios P Diamandis

Quantitative proteomics for identifying biomarkers for tuberculous meningitis

Ghantasala S Sameer Kumar, Abhilash K Venugopal, Anita Mahadevan, Santosh Renuse, H C Harsha, Nandini A Sahasrabuddhe, Harsh Pawar, Rakesh Sharma, Praveen Kumar, Sudha Rajagopalan, Keith Waddell, Yarappa L Ramachandra, Parthasarathy Satishchandra, Raghothama Chaerkady, T S Keshava Prasad, K Shankar, Akhilesh Pandey

Investigation of ovarian cancer associated sialylation changes in N-linked glycopeptides by quantitative proteomics

Vivekananda Shetty, Julie Hafner, Punit Shah, Zacharie Nickens, Ramila Philip

Detection of BK virus in urine from renal transplant subjects by mass spectrometry

Rebecca Konietzny, Roman Fischer, Nicola Ternette, Cynthia A Wright, Ben W Turney, Aron Chakera, David Hughes, Benedikt M Kessler, Chris W Pugh

Virtual screening and evaluation of Ketol-Acid Reducto-Isomerase (KARI) as a putative drug target for Aspergillosis

Vivek K Morya, Shalini Kumari, Eun-ki Kim

Development of protein biomarkers in cerebrospinal fluid for secondary progressive multiple sclerosis using selected reaction monitoring mass spectrometry (SRM-MS)

Yan Jia, Tianxia Wu, Christine A Jelinek, Bibiana Bielekova, Linda Chang, Scott Newsome, Sharmilee Gnanapavan, Gavin Giovannoni, Dawn Chen, Peter A Calabresi, Avindra Nath, Robert J Cotter

Urine proteome of autosomal dominant polycystic kidney disease patients

Magda Bakun, Mariusz Niemczyk, Dominik Domanski, Radek Jazwiec, Anna Perzanowska, Stanislaw Niemczyk, Michal Kistowski, Agnieszka Fabijanska, Agnieszka Borowiec, Leszek Paczek, Michal Dadlez

Unique and differential protein signatures within the mononuclear cells of HIV-1 and HCV mono-infected and co-infected patients

Nawal Boukli, Vivekananda Shetty, Luis Cubano, Martha Ricaurte, Jordana Coelho-dos-Reis, Zacharie Nickens, Punit Shah, Andrew H. Talal, Ramila Philip, pooja Jain

Nm23/Nucleoside Diphosphate Kinase-A as a Potent Prognostic marker in Invasive Pancreatic Ductal Carcinoma Identified by Proteomic Analysis of Laser Micro-dissected Formalin-Fixed Paraffin-Embedded Tissue

Tatsuyuki Takadate, Tohru Onogawa, Kiyonaga Fujii, Fuyuhiko Motoi, Sayaka Mikami, Tetsuya Fukuda, Makoto Kihara, Takashi Suzuki, Taro Takemura, Takashi Minowa, Nobutaka Hanagata, Kengo Kinoshita, Takanori Morikawa, Keiichi Shirasaki, Toshiki Rikiyama, Yu Katayose, Shinichi Egawa, Toshihide Nishimura, Michiaki Unno

Selected Reaction Monitoring (SRM) Analysis of Epidermal Growth Factor Receptor (EGFR) in Formalin Fixed Tumor Tissue

Todd Hembrough, Sheeno Thyparambil, Wei-Li Liao, Marlene M Darfler, Joseph Abdo, Kathleen M Bengali, Paul Taylor, Jiefei Tong, Humberto Lara-Guerra, Thomas K Waddell, Michael F Moran, Ming-Sound Tsao, David B Krizman, Jon Burrows

The cerebrospinal fluid proteome in HIV infection: change associated with disease severity

Thomas E Angel, Jon M Jacobs, Serena S Spudich, Marina A Gritsenko, Dietmar Fuchs, Teri Liegler, Henrik Zetterberg, David G Camp, Richard W Price, Richard D Smith

Ovarian cyst fluid is a rich proteome resource for detection of new tumor biomarkers

Bj？rg Kristjansdottir, Karolina Partheen, Eric T Fung, Janusz Marcickiewicz, Christine Yip, Mats Br？nnstr？m, Karin Sundfeldt

The human proteome – a scientific opportunity for transforming diagnostics, therapeutics, and healthcare

Marc Vidal, Daniel W Chan, Mark Gerstein, Matthias Mann, Gilbert S Omenn, Danilo Tagle, Salvatore Sechi, Workshop Participants

Characterization of the seminal plasma proteome in men with prostatitis by mass spectrometry

Daniel Kagedan, Irene Lecker, Ihor Batruch, Christopher Smith, Ilia Kaploun, Kirk Lo, Ethan Grober, Eleftherios P Diamandis, Keith A Jarvi

Overexpression of ribosome binding protein 1 (RRBP1) in breast cancer

Deepthi Telikicherla, Arivusudar Marimuthu, Manoj Kashyap, Y L Ramachandra, Sujatha Mohan, Juan Roa, Jagadeesha Maharudraiah, Akhilesh Pandey

The ADAMs family of proteases: new biomarkers and therapeutic targets for cancer?

Michael J Duffy, Maeve Mullooly, Norma O'Donovan, Sumainizah Sukor, John Crown, Aisling Pierce, Patricia M McGowan

Plasma proteomic profile of sulfur mustard exposed lung diseases patients using 2-dimensional gel electrophoresis

Hossein Mehrani, Mostafa Ghanei, Jafar Aslani, Zahra Tabatabaei

Functional proteomics can define prognosis and predict pathologic complete response in patients with breast cancer

Ana M Gonzalez-Angulo, Bryan T Hennessy, Funda Meric-Bernstam, Aysegul Sahin, Wenbin Liu, Zhenlin Ju, Mark S Carey, Simen Myhre, Corey Speers, Lei Deng, Russell Broaddus, Ana Lluch, Sam Aparicio, Powel Brown, Lajos Pusztai, W Symmans, Jan Alsner, Jens Overgaard, Anne-Lise Borresen-Dale, Gabriel N Hortobagyi, Kevin R Coombes, Gordon B Mills

The Clinical Proteomics editorial team would like to announce a change in the volume listings for the journal

Clinical Proteomics

Desmin expression in colorectal cancer stroma correlates with advanced stage disease and marks angiogenic microvessels

Georgia Arentz, Tim Chataway, Timothy J Price, Zaipul Izwan, Gemma Hardi, Adrian G Cummins, Jennifer E Hardingham

Spectral counting assessment of protein dynamic range in cerebrospinal fluid following depletion with plasma-designed immunoaffinity columns

Jacques Borg, Alex Campos, Claudio Diema, Núria Ome？aca, Eliandre de Oliveira, Joan Guinovart, Marta Vilaseca

Down-regulation of kallikrein-related peptidase 5 (KLK5) expression in breast cancer patients: a biomarker for the differential diagnosis of breast lesions

Margaritis Avgeris, Georgia Papachristopoulou, Athanasios Polychronis, Andreas Scorilas

Two-dimensional difference gel electrophoresis (DIGE) analysis of sera from visceral leishmaniasis patients

Lokesh A Rukmangadachar, Jitender Kataria, Gururao Hariprasad, Jyotish C Samantaray, Alagiri Srinivasan

Drug metabolizing enzyme activities versus genetic variances for drug of clinical pharmacogenomic relevance

Alan HB Wu

Exciting news from Clinical Proteomics

Daniel W Chan

Aberrant glycosylation associated with enzymes as cancer biomarkers

Danni L Meany, Daniel W Chan

Evaluating the potential of a novel oral lesion exudate collection method coupled with mass spectrometry-based proteomics for oral cancer biomarker discovery

Joel A Kooren, Nelson L Rhodus, Chuanning Tang, Pratik D Jagtap, Bryan J Horrigan, Timothy J Griffin

A simpler method of preprocessing MALDI-TOF MS data for differential biomarker analysis: stem cell and melanoma cancer studies

Dong L Tong, David J Boocock, Clare Coveney, Jaimy Saif, Susana G Gomez, Sergio Querol, Robert Rees, Graham R Ball

Morphological changes in diabetic kidney are associated with increased O-GlcNAcylation of cytoskeletal proteins including α-actinin 4

Yoshihiro Akimoto, Yuri Miura, Tosifusa Toda, Margreet A Wolfert, Lance Wells, Geert-Jan Boons, Gerald W Hart, Tamao Endo, Hayato Kawakami

Challenges in implementing individualized medicine illustrated by antimetabolite therapy of childhood acute lymphoblastic leukemia

Jacob Nersting, Louise Borst, Kjeld Schmiegelow

Immobilized pH gradient-driven paper-based IEF: a new method for fractionating complex peptide mixtures before MS analysis

Beerelli Seshi, Kumaraguru Raja, KH Chandramouli

Proteomic profiling of the mesenteric lymph after hemorrhagic shock: Differential gel electrophoresis and mass spectrometry analysis

Zurawel Ashley,Moore Ernest E,Peltz Erik D,Jordan Janeen R

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