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Frontiers in Neuroinformatics

ISSN Print: 1662-5196

ISSN Online:

Website: http://www.frontiersin.org/Neuroinformatics/archive

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NeuroElectro: a window to the world's neuron electrophysiology data

Judith Savitskaya,Nathaniel N. Urban,Richard C. Gerkin

Large-scale automated image analysis for computational profiling of brain tissue surrounding implanted neuroprosthetic devices using Python

Nicolas Rey-Villamizar

libNeuroML and PyLEMS: using Python to combine procedural and declarative modeling approaches in computational neuroscience

Michael Vella,Robert C. Cannon,Sharon Crook,Andrew P. Davison,Gautham Ganapathy,Hugh P. C. Robinson,R. Angus Silver,Padraig Gleeson

The Insight ToolKit image registration framework

Brian Avants,Nicholas J. Tustison,Gang Song,James Gee

Integrated platform and API for electrophysiological data

Andrey Sobolev,Adrian Stoewer,Aljoscha Leonhardt,Philipp L. Rautenberg,Christian J. Kellner,Christian Garbers,Thomas Wachtler

High-throughput neuroimaging-genetics computational infrastructure

Ivo D. Dinov,Zhizhong Liu,Paul Eggert,Seok Woo Moon,Arthur W. Toga

Integrating neuroinformatics tools in TheVirtualBrain

M. Marmaduke Woodman,Lia Domide,Stuart A. Knock,Paula Sanz-Leon,Jochen Mersmann,Anthony R. McIntosh,Viktor Jirsa

Efficient generation of connectivity in neuronal networks from simulator-independent descriptions

Mikael Djurfeldt,Andrew P. Davison,Jochen M. Eppler

Structure-centered portal for child psychiatry research

Pallavi Rane,Christian Haselgrove

Corrigendum: Impact of functional MRI data preprocessing pipeline on default-mode network detectability in patients with disorders of consciousness

Adrian S. Andronache,Cristina Rosazza,Ludovico Minati

A simple tool for neuroimaging data sharing

Christian Haselgrove,Jean-Baptiste Poline,David N. Kennedy

Neurovascular Network Explorer 1.0: a database of 2-photon single-vessel diameter measurements with MATLAB？ graphical user interface

Peifang Tian,Anders M. Dale,Anna Devor,Payam A. Saisan

Real-time multi-peak tractography for instantaneous connectivity display

Maxime Chamberland,Kevin Whittingstall,David Fortin,David Mathieu,Maxime Descoteaux

Extending the NIF DISCO framework to automate complex workflow: coordinating the harvest and integration of data from diverse neuroscience information resources

Luis N. Marenco,Rixin Wang,Anita E. Bandrowski,Jeffrey S. Grethe,Gordon M. Shepherd,Perry L. Miller

Python-based geometry preparation and simulation visualization toolkits for STEPS

Weiliang Chen,Erik De Schutter

Canonical information flow decomposition among neural structure subsets

Daniel Y. Takahashi,Luiz A. Baccalá,Koichi Sameshima

Accumulated source imaging of brain activity with both low and high-frequency neuromagnetic signals

Jing Xiang,Qian Luo,Rupesh Kotecha,Abraham Korman,Fawen Zhang,Huan Luo,Hisako Fujiwara,Douglas F. Rose

Allen Brain Atlas-Driven Visualizations: a web-based gene expression energy visualization tool

Andrew Zaldivar,Jeffrey L. Krichmar

Web based tools for visualizing imaging data and development of XNATView, a zero footprint image viewer

David A. Gutman,William D. Dunn Jr,Jake Cobb,Richard M. Stoner,Jayashree Kalpathy-Cramer,Bradley Erickson

CBRAIN: a web-based, distributed computing platform for collaborative neuroimaging research

Tarek Sherif,Marc-Etienne Rousseau,Reza Adalat,Samir Das,Tristan Glatard

Nengo: a Python tool for building large-scale functional brain models

Trevor Bekolay,James Bergstra,Eric Hunsberger,Travis DeWolf,Terrence C. Stewart,Daniel Rasmussen,Xuan Choo,Aaron Russell Voelker,Chris Eliasmith

TheHiveDB image data management and analysis framework

J-Sebastian Muehlboeck,Eric Westman,Andrew Simmons

Toward a real time multi-tissue Adaptive Physics-Based Non-Rigid Registration framework for brain tumor resection

Fotis Drakopoulos,Nikos P. Chrisochoides

Reduced predictable information in brain signals in autism spectrum disorder

Carlos Gómez,Joseph T. Lizier,Michael Schaum,Patricia Wollstadt,Peter Uhlhaas,Christine M. Freitag,Roberto Hornero,Michael Wibral

Multi-atlas segmentation of subcortical brain structures via the AutoSeg software pipeline

Jiahui Wang,Clement Vachet,Xuemei Huang,Guido Gerig,Martin Styner

Algorithms of causal inference for the analysis of effective connectivity among brain regions

Daniel Chicharro,Stefano Panzeri

ITK: enabling reproducible research and open science

Matthew McCormick,Xiaoxiao Liu,Julien Jomier,Charles Marion,Luis Ibanez

Neo: an object model for handling electrophysiology data in multiple formats

Samuel Garcia,Domenico Guarino,Florent Jaillet,Todd Jennings,Robert Pr？pper,Philipp L. Rautenberg,Chris C. Rodgers,Andrey Sobolev,Thomas Wachtler,Pierre Yger,Andrew P. Davison

Corrigendum: Software and hardware infrastructure for research in electrophysiology

Roman Mou？ek

SIMA: Python software for analysis of dynamic fluorescence imaging data

Patrick Kaifosh,Jeffrey Zaremba,Attila Losonczy

LEMS: A language for expressing complex biological models in concise and hierarchical form and its use in underpinning NeuroML 2

Robert C. Cannon,Padraig Gleeson,Sharon Crook,Gautham Ganapathy,Boris Marin,Eugenio Piasini,R. Angus Silver

Neuroinformatics challenges to the structural, connectomic, functional and electrophysiological multimodal imaging of human traumatic brain injury

S. Y. Matthew Goh,Andrei Irimia,John D. Van Horn

Energy landscapes of resting-state brain networks

Takamitsu Watanabe,Ichiro Shirouzu,Seiki Konishi,Yasushi Miyashita,Naoki Masuda

Dipy, a library for the analysis of diffusion MRI data

Eleftherios Garyfallidis,Matthew Brett,Bagrat Amirbekian,Ariel Rokem,Stefan van der Walt,Maxime Descoteaux,Ian Nimmo-Smith

Machine learning for neuroimaging with scikit-learn

Alexandre Abraham,Fabian Pedregosa,Michael Eickenberg,Jean Kossaifi,Alexandre Gramfort,Bertrand Thirion,Ga？l Varoquaux

Stimfit: quantifying electrophysiological data with Python

Segundo J. Guzman,Alois Schl？gl,Christoph Schmidt-Hieber

Cyberinfrastructure for the digital brain: spatial standards for integrating rodent brain atlases

Ilya Zaslavsky,Richard A. Baldock

Increasing the reliability of data analysis of functional magnetic resonance imaging by applying a new blockwise permutation method

Daniela Adolf,Snezhana Weston,Sebastian Baecke,Michael Luchtmann,Johannes Bernarding,Siegfried Kropf

NEVESIM: event-driven neural simulation framework with a Python interface

Dejan Pecevski,David Kappel,Zeno Jonke

Limits to high-speed simulations of spiking neural networks using general-purpose computers

Friedemann Zenke,Wulfram Gerstner

Harnessing modern web application technology to create intuitive and efficient data visualization and sharing tools

Dylan Wood,Margaret King,Drew Landis,William Courtney,Jessica A. Turner,Vince D. Calhoun

Spiking network simulation code for petascale computers

Susanne Kunkel,Maximilian Schmidt,Jochen M. Eppler,Hans E. Plesser,Gen Masumoto,Shin Ishii,Tomoki Fukai,Abigail Morrison,Markus Diesmann,Moritz Helias

PyNCS: a microkernel for high-level definition and configuration of neuromorphic electronic systems

Fabio Stefanini,Emre O. Neftci,Sadique Sheik,Giacomo Indiveri

Sample entropy reveals high discriminative power between young and elderly adults in short fMRI data sets

Moses O. Sokunbi

Multi-scale integration and predictability in resting state brain activity

Artemy Kolchinsky,Martijn P. van den Heuvel,Alessandra Griffa,Patric Hagmann,Luis M. Rocha,Olaf Sporns,Joaquín Go？i

1D-3D hybrid modeling—from multi-compartment models to full resolution models in space and time

Stephan Grein,Martin Stepniewski,Markus M. Knodel,Gillian Queisser

Pydpiper: a flexible toolkit for constructing novel registration pipelines

Miriam Friedel,Matthijs C. van Eede,M. Mallar Chakravarty,Jason P. Lerch

Isotropic non-white matter partial volume effects in constrained spherical deconvolution

Timo Roine,Ben Jeurissen,Daniele Perrone,Alexander Leemans,Jan Sijbers

The multi-modal Australian ScienceS Imaging and Visualization Environment (MASSIVE) high performance computing infrastructure: applications in neuroscience and neuroinformatics research

Wojtek J. Goscinski,Paul McIntosh,Christopher J. Hall,Darren Thompson,Graham Galloway,Neil E. B. Killeen,Parnesh Raniga,Amanda Ng,Govinda Poudel,David G. Barnes,Toan Nguyen,Paul Bonnington,Gary F. Egan

A review of multivariate analyses in imaging genetics

Jingyu Liu,Vince D. Calhoun

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