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OALib Journal期刊
ISSN: 2333-9721
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主页: https://journals.plos.org/ploscompbiol/

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A new method for inferring timetrees from temporally sampled molecular sequences

Jessica Priest,Jiamin Deng,Koichiro Tamura,Louise A. Huuki,Qiqing Tao,Sayaka Miura,Sergei L. Kosakovsky Pond,Sudhir Kumar

Limits on amplifiers of natural selection under death-Birth updating

Andreas Pavlogiannis,Josef Tkadlec,Krishnendu Chatterjee,Martin A. Nowak

BrainIAK tutorials: User-friendly learning materials for advanced fMRI analysis

Cameron T. Ellis,Hejia Zhang,Kenneth A. Norman,Manoj Kumar,Mihai Capot？,Nicholas B. Turk-Browne,Peter J. Ramadge,Qihong Lu,Theodore L. Willke

Compositional Lotka-Volterra describes microbial dynamics in the simplex

Eran Halperin,Itsik Pe’er,Joao B. Xavier,Liat Shenhav,Tyler A. Joseph

The impact of news exposure on collective attention in the United States during the 2016 Zika epidemic

André Panisson,Ciro Cattuto,Daniela Paolotti,Michele Tizzoni

Multiple protein-DNA interfaces unravelled by evolutionary information, physico-chemical and geometrical properties

Alessandra Carbone,Elodie Laine,Flavia Corsi,Richard Lavery

Estimating epidemiological parameters from experiments in vector access to host plants, the method of matching gradients

Christopher A. Gilligan,Geofrey W. Sikazwe,Ruairí Donnelly

Modelling the epidemiology of residual Plasmodium vivax malaria in a heterogeneous host population: A case study in the Amazon Basin

M. Gabriela M. Gomes,Marcelo U. Ferreira,Rodrigo M. Corder

Interference with HIV infection of the first cell is essential for viral clearance at sub-optimal levels of drug inhibition

Alex Sigal,Ana Moyano,Gila Lustig,Hylton E. Rodel,Tibor Antal

Optimality of sparse olfactory representations is not affected by network plasticity

Collins Assisi,Mark Stopfer,Maxim Bazhenov

Predicting colorectal cancer risk from adenoma detection via a two-type branching process model

Benjamin Misselwitz,Brian M. Lang,Jack Kuipers,Niko Beerenwinkel

Phylogeographic reconstruction using air transportation data and its application to the 2009 H1N1 influenza A pandemic

Alice C. McHardy,Sebastian Mu？oz,Susanne Reimering

Computational and robotic modeling reveal parsimonious combinations of interactions between individuals in schooling fish

Clément Sire,Guy Theraulaz,Liu Lei,Ramón Escobedo

Uncoupling the roles of firing rates and spike bursts in shaping the STN-GPe beta band oscillations

Ajith Sahasranamam,Arvind Kumar,Jyotika Bahuguna

The spread of a wild plant pathogen is driven by the road network

Anna-Liisa Laine,Elina Numminen

Multiple-target tracking in human and machine vision

Ali Borji,Fatemeh Ghezloo,Hamid Abrishami Moghaddam,Reza Lashgari,Shiva Kamkar

On the choice of metric in gradient-based theories of brain function

Jean-Pascal Pfister,Johanni Brea,Simone Carlo Surace,Wulfram Gerstner

Ten simple rules for innovative dissemination of research

Daniela Luzi,Edit Gorogh,Electra Sifacaki,Jonathan P. Tennant,Lucio Pisacane,Michela Vignoli,Peter Kraker,Roberta Ruggieri,Tony Ross-Hellauer,Vilt？ Banelyt？

Ten Simple Rules for writing algorithmic bioinformatics conference papers

Paul Medvedev

Host factor prioritization for pan-viral genetic perturbation screens using random intercept models and network propagation

Ali Tas,Christopher D？chert,Frank van Kuppeveld,Lars Kaderali,Marco Binder,Martijn van Hemert,Natacha S. Ogando,Niko Beerenwinkel,Ralf Bartenschlager,Simon Dirmeier

The role of spatial structure in the evolution of viral innate immunity evasion: A diffusion-reaction cellular automaton model

Ernesto Segredo-Otero,Rafael Sanjuán

SmartPhase: Accurate and fast phasing of heterozygous variant pairs for genetic diagnosis of rare diseases

Christoph Klein,Hans-Werner Mewes,Meino Rohlfs,Paul Hager,Tim Jeske

A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks

David Angeli,Eduardo D. Sontag,M. Ali Al-Radhawi

eXplainable Artificial Intelligence (XAI) for the identification of biologically relevant gene expression patterns in longitudinal human studies, insights from obesity research

Alberto Segura-Delgado,Augusto Anguita-Ruiz,Concepción M. Aguilera,Jesús Alcalá-Fdez,Rafael Alcalá

DetEdit: A graphical user interface for annotating and editing events detected in long-term acoustic monitoring data

Alba Solsona-Berga,John A. Hildebrand,Kaitlin E. Frasier,Sean M. Wiggins,Simone Baumann-Pickering

The role of actin protrusion dynamics in cell migration through a degradable viscoelastic extracellular matrix: Insights from a computational model

Bart Smeets,Diego A. Vargas,Hans Van Oosterwyck,Herman Ramon,Paul Van Liedekerke,Tommy Heck

Multi-state design of flexible proteins predicts sequences optimal for conformational change

Alexander M. Sevy,James E. Crowe Jr.,Jens Meiler,Marion F. Sauer

Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma

Claudia D？ring,Hendrik Sch？fer,Ina Koch,Jennifer Hannig,J？rg Ackermann,Marie Hebel,Martin-Leo Hansmann,Sylvia Hartmann,Tim Sch？fer

Chromatin-enriched RNAs mark active and repressive cis-regulation: An analysis of nuclear RNA-seq

Alexander J. Ruthenburg,Carlos Perez-Cervantes,Ivan P. Moskowitz,Johnathon M. Hall,Michael Gribskov,Xiangying Sun,Xinan H. Yang,Zhezhen Wang

Coding with transient trajectories in recurrent neural networks

Giulio Bondanelli,Srdjan Ostojic

Neurogranin stimulates Ca2+/calmodulin-dependent kinase II by suppressing calcineurin activity at specific calcium spike frequencies

Lu Li,Massimo Lai,Nicolas Le Novère,Stephen Cole,Stuart J. Edelstein

Early prediction of antigenic transitions for influenza A/H3N2

Lauren A. Castro,Lauren Ancel Meyers,Trevor Bedford

Phenotype-based probabilistic analysis of heterogeneous responses to cancer drugs and their combination efficacy

Divya Venkat,Mehwish Khaliq,Mohammad Fallahi-Sichani,Mohan Manikkam,Natacha Comandante-Lou

Network mechanisms and dysfunction within an integrated computational model of progression through mitosis in the human cell cycle

Katie M. Cataldo,Ranjan K. Dash,Scott S. Terhune,Yongwoon Jung

Mechanistic models of PLC/PKC signaling implicate phosphatidic acid as a key amplifier of chemotactic gradient sensing

Anisur Rahman,James E. Bear,Jamie L. Nosbisch,Jason M. Haugh,Krithika Mohan,Timothy C. Elston

Collective intelligence defines biological functions in Wikipedia as communities in the hidden protein connection network

Andrei Zinovyev,Dima L. Shepelyansky,Emmanuel Barillot,Klaus M. Frahm,Laura Cantini,Urszula Czerwinska

Comparison of methods for rhythm analysis of complex animals’ acoustic signals

Lara S. Burchardt,Mirjam Kn？rnschild

Stochastic modeling reveals kinetic heterogeneity in post-replication DNA methylation

Arjang Fahim,Elizabeth L. Read,Honglei Ren,Julien Morival,Luis Busto-Moner,Timothy L. Downing,Zachary Reitz

CAncer bioMarker Prediction Pipeline (CAMPP)—A standardized framework for the analysis of quantitative biological data

Anders Krogh,Elena Papaleo,Thilde Terkelsen

Performance of virtual screening against GPCR homology models: Impact of template selection and treatment of binding site plasticity

Ismael Rodríguez-Espigares,Jana Selent,Jens Carlsson,Mariama Jaiteh

The relation between crosstalk and gene regulation form revisited

Rok Grah,Tamar Friedlander

Stochastic optimal open-loop control as a theory of force and impedance planning via muscle co-contraction

Bastien Berret,Frédéric Jean

Humans adapt their anticipatory eye movements to the volatility of visual motion properties

Anna Montagnini,Chloé Pasturel,Laurent Udo Perrinet

Inference on dengue epidemics with Bayesian regime switching models

Alex R. Cook,Borame Sue Dickens,Jue Tao Lim,Ng Lee Ching,Sun Haoyang

Accounting for red blood cell accessibility reveals distinct invasion strategies in Plasmodium falciparum strains

Ambroise D. Ahouidi,Amy K. Bei,Cameron V. Jennings,Caroline O. Buckee,Elsa Hansen,Francisco Y. Cai,Manoj T. Duraisingh,Souleymane Mboup,Tiffany M. DeSimone

Striatal network modeling in Huntington’s Disease

Adam Ponzi,Benjamin R. Miller,Claudia Rangel-Barajas,Emily S. Zhang,George V. Rebec,James Kozloski,Kendra D. Bunner,Scott J. Barton

Critical role of deadenylation in regulating poly(A) rhythms and circadian gene expression

Jing Chen,Shihoko Kojima,Xiangyu Yao

BioConceptVec: Creating and evaluating literature-based biomedical concept embeddings on a large scale

Chih-Hsuan Wei,Kyubum Lee,Qingyu Chen,Shankai Yan,Sun Kim,Zhiyong Lu

Calibration of individual-based models to epidemiological data: A systematic review

C. Marijn Hazelbag,Emanuel M. Dominic,Jonathan Dushoff,Wim Delva,Zinhle E. Mthombothi

©2008-2020 OALib, Inc | Public user content licensed CC-BY 4.0 unless otherwise specified. OALib ISSN Online: 2333-9721 OALib ISSN Print: 2333-9705