Quantitative Biology - oalib

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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Identifiability of the unrooted species tree topology under the coalescent model with time-reversible substitution processes, site-specific rate variation, and invariable sites

Julia Chifman,Laura Kubatko

In Silico Derivation of HLA-Specific Alloreactivity Potential from Whole Exome Sequencing of Stem Cell Transplant Donors and Recipients: Understanding the Quantitative Immuno-biology of Allogeneic Transplantation

Max Jameson-Lee,Vishal Koparde,Phil Griffith,Allison F. Scalora,Juliana K. Sampson,Haniya Khalid,Nihar U. Sheth,Michael Batalo,Myrna G. Serrano,Catherine H. Roberts,Michael L. Hess,Gregory A. Buck,Michael C. Neale,Masoud H. Manjili,Amir A. Toor

Nanopore Sequencing of the phi X 174 genome

Andrew H. Laszlo,Ian M. Derrington,Brian C. Ross,Henry Brinkerhoff,Andrew Adey,Ian C. Nova,Jonathan M. Craig,Kyle W. Langford,Jenny Mae Samson,Riza Daza,Kenji Doering,Jay Shendure,Jens H. Gundlach

Mapping the Space of Genomic Signatures

Lila Kari,Kathleen A. Hill,Abu S. Sayem,Rallis Karamichalis,Nathaniel Bryans,Katelyn Davis,Nikesh S. Dattani

Identifying the Genetic Basis of Functional Protein Evolution Using Reconstructed Ancestors

Victor Hanson-Smith,Christopher Baker,Alexander Johnson

Modeling TB-HIV syndemic and treatment

Cristiana J. Silva,Delfim F. M. Torres

Predicting evolution from the shape of genealogical trees

Richard A. Neher,Colin A. Russell,Boris I. Shraiman

Posterior predictive checks to quantify lack-of-fit in admixture models of latent population structure

David Mimno,David M Blei,Barbara E Engelhardt

Epidemic reconstruction in a phylogenetics framework: transmission trees as partitions

Matthew Hall,Andrew Rambaut

Stochastic synchronization of genetic oscillators induced by miRNA

Saurabh Kumar Sharma,Shakti Nath Singh,Md. Jahoor Alam,R. K. Brojen Singh

Genetic Studies of Physiological Traits with Their Application to Sleep Apnea

D. Y. Lee,C. Hanis,G. I. Bell,D. A. Aguilar,S. Redline,J. Below,M. M. Xiong

M3D: a kernel-based test for shape changes in methylation profiles

Tom Mayo,Gabriele Schweikert,Guido Sanguinetti

Second-generation PLINK: rising to the challenge of larger and richer datasets

Christopher C. Chang,Carson C. Chow,Laurent C. A. M. Tellier,Shashaank Vattikuti,Shaun M. Purcell,James J. Lee

On the Structure of the Initiation and Elongation Rates that Maximize Protein Production in the Ribosome Flow Model

Yoram Zarai,Michael Margaliot

Cancer systems biology in the genome sequencing era: Part 1, dissecting and modeling of tumor clones and their networks

Edwin Wang,Jinfeng Zou,Naif Zaman,Lenore K. Beitel,Mark Trifiro,Miltiadis Paliouras

Optimal Colored Noise for Estimating Phase Response Curves

Kazuhiko Morinaga,Ryota Miyata,Toru Aonishi

Managing HIV/AIDS in Malawi

Brian G Williams

Population pressure and global markets drive a decade of forest cover change in Africa's Albertine Rift

Sadie J. Ryan,Michael Palace,Joel Hartter,Jeremy E. Diem,Colin A. Chapman,Jane Southworth

Optimizing Metabonomic Spectral Replacement

Mansour Taghavi Azar Sharabiani

A few points suffice: Efficient large-scale computation of brain voxel-wise functional connectomes from a sparse spatio-temporal point-process

Enzo Tagliazucchi,Helmut Laufs,Dante R. Chialvo

Two-component feedback loops and deformed mechanics

David S. Tourigny

The entropic basis of collective behaviour

Richard P. Mann,Roman Garnett

Can Sol's Explanation for the Evolution of Animal Innovation Account for Human Innovation?

Liane Gabora,Apara Ranjan

Parsimony, exhaustivity and balanced detection in neocortex

Alberto Romagnoni,Jér？me Ribot,Daniel Bennequin,Jonathan D. Touboul

Cumulants of Hawkes point processes

Stojan Jovanovi？,John Hertz,Stefan Rotter

Cerebral functional connectivity periodically (de)synchronizes with anatomical constraints

Rapha？l Liégeois,Erik Ziegler,Pierre Geurts,Francisco Gomez,Mohamed Ali Bahri,Christophe Phillips,Andrea Soddu,Audrey Vanhaudenhuyse,Steven Laureys,Rodolphe Sepulchre

General markers of conscious visual perception and their timing

Renate Rutiku,Jaan Aru,Talis Bachmann

A role for recurrent processing in object completion: neurophysiological, psychophysical and computational"evidence

Hanlin Tang,Calin Buia,Joseph Madsen,William S. Anderson,Gabriel Kreiman

Affine differential geometry and smoothness maximization as tools for identifying geometric movement primitives

Felix Polyakov

WFABC: a Wright-Fisher ABC-based approach for inferring effective population sizes and selection coefficients from time-sampled data

Matthieu Foll,Hyunjin Shim,Jeffrey D. Jensen

Fluctuation-response Relation Unifies Dynamical Behaviors in Neural Fields

C. C. Alan Fung,K. Y. Michael Wong,Hongzi Mao,Si Wu

Convolution Metric for Neuron Membrane Potential Recordings

Garrett N. Evans

Topology and inference for multi-type Yule trees

Lea Popovic,Mariolys Rivas

Biallelic Mutation-Drift Diffusion in the Limit of Small Scaled Mutation Rates

Claus Vogl

Circumstances in which parsimony but not compatibility will be provably misleading

Robert W. Scotland,Mike Steel

On the interplay of speciation and dispersal: An evolutionary food web model in space

Korinna T. Allhoff,Eva Marie Weiel,Tobias Rogge,Barbara Drossel

Simulated Cytoskeletal Collapse via Tau Degradation

Austin Sendek,Henry R. Fuller,N. Robert Hayre,Rajiv R. P. Singh,Daniel L. Cox

Modeling sequence-specific polymers using anisotropic coarse-grained sites allows quantitative comparison with experiment

Thomas K. Haxton,Ranjan V. Mannige,Ronald N. Zuckermann,Stephen Whitelam

Elastic Nanocomputation in an Ideal Brain (1p abstract + 36 pages + 49 endnotes)

William Softky

Hydropathic evolution of hemagglutinin and neuraminidase glycoproteins of A(H1N1 and H3N2) viruses

J. C. Phillips

Modeling the Heart as a Communication System

Hiroshi Ashikaga,José Aguilar-Rodríguez,Shai Gorsky,Elizabeth Lusczek,Flávia Maria Darcie Marquitti,Brian Thompson,Degang Wu,Joshua Garland

Liquid refractive index sensing independent of opacity using an optofluidic sensor based on diffraction

Zhida Xu,Logan Liu

Simulating Organogenesis: Algorithms for the Image-based Determination of Displacement Fields

Clemens Arthur Schwaninger,Denis Menshykau,Dagmar Iber

The Hurst exponents of Nitzschia sp. diatom trajectories observed by light microscopy

J. S. Murguia,H. C. Rosu,A. Jimenez,B. Gutierrez-Medina,J. V. Garcia-Meza

Calculating complexity of large randomized libraries

Yong Kong

Bag-of-calls analysis reveals group-specific vocal repertoire in long-finned pilot whales

Heike Vester,Kurt Hammerschmidt,Marc Timme,Sarah Hallerberg

Inferring unobserved multistrain epidemic sub-populations using synchronization dynamics

Eric Forgoston,Leah B. Shaw,Ira B. Schwartz

Conflation of short identity-by-descent segments bias their inferred length distribution

Charleston W. K. Chiang,Peter Ralph,John Novembre

Two-trace model for spike-timing-dependent synaptic plasticity

Rodrigo Echeveste,Claudius Gros

A model for neural activity in the absence of external stimuli

Aline Duarte,Guilherme Ost

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