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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Modeling polymerization of microtubules: a quantum mechanical approach

Vahid Rezania,Jack Tuszynski

Model for processive nucleotide and repeat additions by the telomerase

Ping Xie

Fluctuating semiflexible polymer ribbon constrained to a ring

Karen Alim,Erwin Frey

Exact Statistical Mechanical Investigation of a Finite Model Protein in its environment: A Small System Paradigm

P. D. Gujrati,Bradley P. Lambeth Jr,Andrea Corsi,Evan Askanazi

Nucleosome Chiral Transition under Positive Torsional Stress in Single Chromatin Fibers

Aurelien Bancaud,Gaudeline Wagner,Natalia Conde e Silva,Christophe Lavelle,Hua Wong,Julien Mozziconacci,Maria Barbi,Andrei Sivolob,Eric Le Cam,Liliane Mouawad,Jean-Louis Viovy,Jean-Marc Victor,Ariel Prunell

Role of homeostasis in learning sparse representations

Laurent Perrinet

Multi-bit information storage by multisite phosphorylation

Matthew Thomson,Jeremy Gunawardena

A statistical mechanics approach to reverse engineering: sparsity and biological priors on gene regulatory networks

Massimo Pica Ciamarra,Gennaro Miele,Leopoldo Milano,Mario Nicodemi,Giancarlo Raiconi

Reverse engineering time discrete finite dynamical systems: A feasible undertaking?

Edgar Delgado-Eckert

Cooperative action in eukaryotic gene regulation: physical properties of a viral example

Maria Werner,LiZhe Zhu,Erik Aurell

Allovalency revisited: an analysis of multisite phosphorylation and substrate rebinding

Jason W. Locasale

Silver staining of proteins in polyacrylamide gels

Mireille Chevallet,Sylvie Luche,Thierry Rabilloud

Comparing Classical Pathways and Modern Networks: Towards the Development of an Edge Ontology

Long J. Lu,Andrea Sboner,Yuanpeng J. Huang,Hao Xin Lu,Tara A. Gianoulis,Kevin Y. Yip,Philip M. Kim,Gaetano T. Montelione,Mark B. Gerstein

Asymptotic Enumeration of RNA Structures with Pseudoknots

Emma Y. Jin,Christian M. Reidys

OrfMapper: A Web-Based Application for Visualizing Gene Clusters on Metabolic Pathway Maps

Robbe Wunschiers,Martin Vellguth

Simulating non-small cell lung cancer with a multiscale agent-based model

Zhihui Wang,Le Zhang,Jonathan Sagotsky,Thomas S. Deisboeck

Shape instabilities in vesicles: a phase-field model

F. Campelo,A. Hernandez-Machado

Crystal Irradiation Stimulation of Enzyme Reactivity: An Explanation

George E. Bass

Influence of Hydrodynamic Interactions on Mechanical Unfolding of Proteins

P. Szymczak,Marek Cieplak

Tightening of knots in proteins

Joanna I. Su？kowska,Piotr Su？kowski,Piotr Szymczak,Marek Cieplak

Quantum dynamics of N-methylacetamide studied by the vibrational configuration interaction method

Hiroshi Fujisaki,Kiyoshi Yagi,Kimihiko Hirao,John E. Straub

How do trehalose, maltose and sucrose influence some structural and dynamical properties of lysozyme ? An insight from Molecular Dynamics simulations

A. Lerbret,P. Bordat,F. Affouard,A. Hedoux,Y. Guinet,M. Descamps

Validating module network learning algorithms using simulated data

Tom Michoel,Steven Maere,Eric Bonnet,Anagha Joshi,Yvan Saeys,Tim Van den Bulcke,Koenraad Van Leemput,Piet van Remortel,Martin Kuiper,Kathleen Marchal,Yves Van de Peer

Phylogenetic mixtures on a single tree can mimic a tree of another topology

Frederick A. Matsen,Mike Steel

Unifying Evolutionary and Network Dynamics

Samarth Swarup,Les Gasser

An individual based model with global competition interaction: fluctuations effects in pattern formation

E. Brigatti,V. Schwammle,Minos A. Neto

A new chaotic attractor in a basic multi-strain epidemiological model with temporary cross-immunity

Maíra Aguiar,Nico Stollenwerk

Reconstructing the free energy landscape of a mechanically unfolded model protein

Alberto Imparato,Stefano Luccioli,Alessandro Torcini

Fluctuation-dissipation ratios in the dynamics of self-assembly

Robert L. Jack,Michael F. Hagan,David Chandler

DNA Hash Pooling and its Applications

Dennis Shasha,Martyn Amos

Is Adaptive Landscape in Biology a Metaphor or a Quantitative Concept? or Both?

P. Ao

Monte Carlo Simulation of Age-Dependent Host-Parasite Relations

Dietrich Stauffer,Ana Proykova,Karl-Heinz Lampe

Community-driven dispersal in an individual-based predator-prey model

Elise Filotas,Martin Grant,Lael Parrott,Per Arne Rikvold

Gene surfing

Oskar Hallatschek,David R. Nelson

Innate immunity, assessed by plasma NO measurements, is not suppressed during the incubation fast in eiders

S. Bourgeon,T. Raclot,Y. Le Maho,D. Ricquier,F. Criscuolo

Monte Carlo Simulation of Medical Resource Allocation

Ana Proykova,Dietrich Stauffer

Morphological relationship between axon and dendritic arborizations as revealed by Minkowski functionals

Luciano da Fontoura Costa,Marconi Soares Barbosa

Mismatch Repair Error Implies Chargaff's Second Parity Rule

Bo Deng

On the stationary state of a network of inhibitory spiking neurons

Wolfgang Kinzel

Oscillations and temporal signalling in cells

G. Tiana,S. Krishna,S. Pigolotti,M. H. Jensen,K. Sneppen

Evolutionary game theory and population dynamics

Jacek Miekisz

Similarity search for local protein structures at atomic resolution by exploiting a database management system

Akira R. Kinjo,Haruki Nakamura

Numerical analysis of solitons profiles in a composite model for DNA to rsion dynamics

Roberto De Leo,Sergio Demelio

Membrane adhesion and domain formation

Thomas R. Weikl,Reinhard Lipowsky

Parameter Estimation in Biokinetic Degradation Models in Wastewater Treatment - A Novel Approach Relevant for Micro-pollutant Removal

Monika Schoenerklee,Momtchil Peev

Monte Carlo simulations of proteins in cages: influence of confinement on the stability of intermediate states

Pedro Ojeda,Aurora Londono,Nan-Yow Chen,Martin Garcia

Epidemic Size in the Sis Model of Endemic Infec- Tions

David A. Kessler

Markov models for accumulating mutations

Niko Beerenwinkel,Seth Sullivant

Non-equilibrium microtubule fluctuations in a model cytoskeleton

C. P. Brangwynne,G. H. Koenderink,F. C. MacKintosh,D. A. Weitz

Nonlinear mean field Fokker-Planck equations. Application to the chemotaxis of biological populations

Pierre-Henri Chavanis

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