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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Evolutionary game dynamics in phenotype space

Tibor Antal,Hisashi Ohtsuki,John Wakeley,Peter D. Taylor,Martin A. Nowak

Dynamics and Steady States in excitable mobile agent systems

Fernando Peruani,Gustavo J. Sibona

Detecting Robust Patterns in the Spread of Epidemics: A Case Study of Influenza in the United States and France

Pascal Crépey,Marc Barthélemy

GoArrays: highly dynamic and efficient microarray probe design

Sébastien Rimour,David Hill,Cécile Militon,Pierre Peyret

A comparative evolutionary study of transcription networks

A. L. Sellerio,B. Bassetti,H. Isambert,M. Cosentino Lagomarsino

Serially-regulated biological networks fully realize a constrained set of functions

Andrew Mugler,Etay Ziv,Ilya Nemenman,Chris H. Wiggins

Reliability of regulatory networks and its evolution

Stefan Braunewell,Stefan Bornholdt

Contractive piecewise continuous maps modeling networks of inhibitory neurons

E. Catsigeras,A. Rovella,R. Budelli

A solvable model of the genesis of amino-acid sequences via coupled dynamics of folding and slow genetic variation

S. Rabello,A. C. C. Coolen,C. J. Perez-Vicente,F. Fraternali

Phenomenological modeling of DNA overstretching

Ray W. Ogden,Giuseppe Saccomandi,Ivonne Sgura

Chaotic dynamics in the Volterra predator-prey model via linked twist maps

Marina Pireddu,Fabio Zanolin

A coarse-grained Langevin molecular dynamics approach to de novo protein structure prediction

Takeshi N. Sasaki,Hikmet Cetin,Masaki Sasai

A Preliminary Work on Evolutionary Identification of Protein Variants and New Proteins on Grids

Jean-Charles Boisson,Laetitia Jourdan,El-Ghazali Talbi

Charge transport in bacteriorhodopsin monolayers: The contribution of conformational change to current-voltage characteristics

Eleonora Alfinito,Lino Reggiani

The Effect of Recombination on the Neutral Evolution of Genetic Robustness

Gergely J. Szollosi,Imre Derenyi

Clonal Interference, Multiple Mutations, and Adaptation in Large Asexual Populations

Craig A. Fogle,James L. Nagle,Michael M. Desai

Time evolution of epidemic disease on finite and infinite networks

Pierre-André No？l,Bahman Davoudi,Robert C. Brunham,Louis J. Dubé,Babak Pourbohloul

Maximum Power Efficiency and Criticality in Random Boolean Networks

Hilary A. Carteret,Kelly John Rose,Stuart A. Kauffman

Dynamic origin of species

Michael G. Sadovsky

Phase Transitions in Parallel Replication Process

P. N. Timonin,G. Y. Chitov

Fixation and consensus times on a network: a unified approach

G. J. Baxter,R. A. Blythe,A. J. McKane

Analysis of a Gibbs sampler method for model based clustering of gene expression data

Anagha Joshi,Yves Van de Peer,Tom Michoel

Coarse graining of master equations with fast and slow states

Simone Pigolotti,Angelo Vulpiani

Interchromatidal central ridge and transversal symmetry in early metaphasic human chromosome one

O. Argüello-Miranda,G. Sáenz-Arce

Spreading of EGF Receptor Activity into EGF-free Regions and Molecular Therapies of Cancer

Garrit Jentsch,Reiner Kree

Fluctuations in Mass-Action Equilibrium of Protein Binding Networks

Koon-Kiu Yan,Dylan Walker,Sergei Maslov

Statistical properties of thermodynamically predicted RNA secondary structures in viral genomes

Marco Spanò,Fabrizio Lillo,Salvatore Miccichè,Rosario N. Mantegna

Empirical distribution of k-word matches in biological sequences

Sylvain Foret,Susan R. Wilson,Conrad J. Burden

Matrix genetics, part 2: the degeneracy of the genetic code and the octave algebra with two quasi-real units (the genetic octave Yin-Yang-algebra)

Sergey V. Petoukhov

Understanding Distal Transcriptional Regulation from Sequence Motif, Network Inference and Interactome Perspectives

Arvind Rao,Alfred O. Hero III,David J. States,James Douglas Engel

Identifying short motifs by means of extreme value analysis

Daniela Bianchi,Brunello Tirozzi

How shall we use the proteomics toolbox for biomarker discovery?

Pierre Lescuyer,Denis Hochstrasser,Thierry Rabilloud

Lower Bounds for Optimal Alignments of Binary Sequences

Cynthia Vinzant

Keynotes on membrane proteomics

Thierry Rabilloud

Mitochondrial proteomics: analysis of a whole mitochondrial extract with two-dimensional electrophoresis

Thierry Rabilloud

Genetic code evolution as an initial driving force for molecular evolution

Dirson Jian Li,Shengli Zhang

Network Topology as a Driver of Bistability in the lac Operon

Brandilyn Stigler,Alan Veliz-Cuba

Modeling tumor cell migration: from microscopic to macroscopic

Christophe Deroulers,Marine Aubert,Mathilde Badoual,Basil Grammaticos

The Dynamic Replicon: adapting to a changing cellular environment

John Herrick

A physical model of nicotinic ACh receptor kinetics

Ewa Nurowska,Mykola Bratiichuk,Beata Dworakowska,Roman J. Nowak

The dynamics of cargo driven by molecular motors in the context of asymmetric simple exclusion processes

Carla Goldman,Elisa T. Sena

Hierarchies of Biocomplexity: modeling lifes energetic complexity

Bradly Alicea

Efficient seeding techniques for protein similarity search

Mihkail Roytberg,Anna Gambin,Laurent Noé,Slawomir Lasota,Eugenia Furletova,Ewa Szczurek,Gregory Kucherov

Inference of higher order substitution dynamics by Markov chain lumping

Olof G？rnerup,Martin Nilsson Jacobi

Slowly replicating lytic viruses: pseudolysogenic persistence and within-host competition

Jingshan Zhang,Eugene I. Shakhnovich

Evolutionary game theory elucidates the role of glycolysis in glioma progression and invasion

David Basanta,Matthias Simon,Haralambos Hatzikirou,Andreas Deutsch

Oscillations and patterns in interacting populations of two species

Matti Peltomaki,Martin Rost,Mikko Alava

Quasispecies Theory for Horizontal Gene Transfer and Recombination

Enrique Munoz,Jeong-Man Park,Michael W. Deem

Studying the emergence of invasiveness in tumours using game theory

David Basanta,Haralambos Hatzikirou,Andreas Deutsch

Correlations and Synchrony in Threshold Neuron Models

Tatjana Tchumatchenko,Aleksey Malyshev,Theo Geisel,Maxim Volgushev,Fred Wolf

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