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ISSN: 2333-9721
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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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The genetic code degeneracy and the amino acids chemical composition are connected

Tidjani Negadi

Non-neutral theory of biodiversity

Ginestra Bianconi,Luca Ferretti,Silvio Franz

Steric Constraints as a Global Regulation of Growing Leaf Shape

Etienne Couturier,Sylvain Courrech du Pont,Stephane Douady

Quantitative interpretation of binding reactions of rapidly diffusing species using fluorescence recovery after photobleaching

George D Tsibidis

Genome-scale reconstruction of the metabolic network in Yersinia pestis, strain 91001

Ali Navid,Eivind Almaas

Killing of targets by effector CD8$^+$T cells in the mouse spleen follows the law of mass action

Vitaly V. Ganusov,Daniel L. Barber,Rob J. De Boer

Similar in vivo killing efficacy of polyoma virus-specific CD8 T cells during acute and chronic phases of the infection

Vitaly V. Ganusov,Aron E. Lukacher,Anthony M. Byers

Time to fixation in the presence of recombination

Kavita Jain

Replicators in Fine-grained Environment: Adaptation and Polymorphism

Armen E. Allahverdyan,Chin-Kun Hu

Statistical physics of pairwise probability models

Yasser Roudi,Erik Aurell,John Hertz

Correlation-distortion based identification of Linear-Nonlinear-Poisson models

Michael Krumin,Avner Shimron,Shy Shoham

Role of Glia cells in the formation of memory in the brain

Charles Ross,Shirley Redpath

Comparative analysis of module-based versus direct methods for reverse-engineering transcriptional regulatory networks

Tom Michoel,Riet De Smet,Anagha Joshi,Yves Van de Peer,Kathleen Marchal

Optimality Properties of a Proposed Precursor to the Genetic Code

Thomas Butler,Nigel Goldenfeld

Balance between cell survival and death: a minimal quantitative model of tumor necrosis factor alpha cytotoxicity

Roberto Chignola,Marcello Farina,Alessio Del Fabbro,Edoardo Milotti

Identification and Query of Activated Gene Pathways in Disease Progression

Arvind Rao,Alfred O. Hero, III

Finding large average submatrices in high dimensional data

Andrey A. Shabalin,Victor J. Weigman,Charles M. Perou,Andrew B. Nobel

Understanding the Concentration Dependence of Viral Capsid Assembly Kinetics - the Origin of the Lag Time and Identifying the Critical Nucleus Size

Michael F. Hagan

How accurate are polymer models in the analysis of Forster resonance energy transfer experiments on proteins?

E. P. O'Brien,G. Morrison,B. R. Brooks,D. Thirumalai

Atomic-detailed milestones along the folding trajectory of protein G

C. Camilloni,G. Tiana,R. A. Broglia

Optimization of Enzymatic Logic Gates and Networks for Noise Reduction and Stability

Mary A. Arugula,Jan Halamek,Evgeny Katz,Dmitriy Melnikov,Marcos Pita,Vladimir Privman,Guinevere Strack

FDG-PET Parametric Imaging by Total Variation Minimization

Hongbin Guo,Rosemary Renaut,Kewei Chen,Eric Reiman

Synchronization and clustering of synthetic genetic networks: A role for cis-regulatory modules

Jiajun Zhang,Zhanjiang Yuan,Tianshou Zhou

Silver Staining of Proteins in 2DE Gels

Cécile Lelong,Mireille Chevallet,Sylvie Luche,Thierry Rabilloud

Speciation due to hybrid necrosis in plant-pathogen models

I. Ispolatov,Michael Doebeli

Modelling hematopoiesis mediated by growth factors with applications to periodic hematological diseases

Mostafa Adimy,Fabien Crauste,Shigui Ruan

Molecular origin of constant m-values, denatured state collapse, and residue-dependent transition midpoints in globular proteins

Edward P. O'Brien,Bernard R. Brooks,Dave Thirumalai

An effective all-atom potential for proteins

Anders Irb？ck,Simon Mitternacht,Sandipan Mohanty

Dynamics of Enzyme Digestion of a Single Elastic Fiber Under Tension: An Anisotropic Diffusion Model

Ascanio D. Araújo,Arnab Majumdar,Harikrishnan Parame swaran,Béla Suki

Modeling torque versus speed, shot noise, and rotational diffusion of the bacterial flagellar motor

Thierry Mora,Howard Yu,Ned S. Wingreen

Pixel multiplexing for high-speed multi-resolution fluorescence imaging

Gil Bub,Matthias Tecza,Michiel Helmes,Peter Lee,Peter Kohl

Resolving social dilemmas on evolving random networks

Attila Szolnoki,Matjaz Perc

Multi-species stochastic models: small RNA regulation of gene expression

Vlad Elgart

Notes from the Greenhouse World: A Study in Coevolution, Planetary Sustainability, and Community Structure

Lee Worden

Why did life emerge?

Arto Annila,Erkki Annila

The Finite Element Implementation of a K.P.P. Equation for the Simulation of Tsetse Control Measures in the Vicinity of a Game Reserve

S. J. Childs

Phylogenetic Networks Do not Need to Be Complex: Using Fewer Reticulations to Represent Conflicting Clusters

Leo van Iersel,Steven Kelk,Regula Rupp,Daniel Huson

Sparse essential interactions in model networks of gene regulation

Z. Burda,A. Krzywicki,O. C. Martin,M. Zagorski

Identification of possible differences in coding and non-coding fragments of DNA sequences by using the method of the Recurrence Quantification Analysis

Sergio Conte,Alessandro Giuliani

Thermodynamic pathways to genome spatial organization in the cell nucleus

Mario Nicodemi,Antonella Prisco

Optimal cytoplasmatic density and flux balance model under macromolecular crowding effects

Alexei Vazquez

The Stability of Boolean Networks with Generalized Canalizing Rules

Andrew Pomerance,Michelle Girvan,Ed Ott

Enzyme-Based Logic Systems for Information Processing

Evgeny Katz,Vladimir Privman

GeneSupport Maximum Gene-Support Tree Approach to Species Phylogeny Inference

Yunfeng Shan,Xiu-Qing Li

Quantifying mRNA synthesis and decay rates using small RNAs

Vlad Elgart,Tao Jia,Rahul Kulkarni

Progressive Mauve: Multiple alignment of genomes with gene flux and rearrangement

Aaron E. Darling,Bob Mau,Nicole T. Perna

Critical examination of the inherent-structure-landscape analysis of two-state folding proteins

Johannnes-Geert Hagmann,Naoko Nakagawa,Michel Peyrard

Maximum Cliques in Protein Structure Comparison

No？l Malod-Dognin,Rumen Andonov,Nicola Yanev

Model for solvent viscosity effect on enzymatic reactions

A. E. Sitnitsky

Characterizing phylogenetically decisive taxon coverage

Mike Steel,Michael J. Sanderson

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