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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Questing for an optimal, universal viral agent for oncolytic virotherapy

L R Paiva,M L Martins,S C Ferreira Jr

Stability of nonconstant stationary solutions in a reaction-diffusion equation coupled to the system of ordinary differential equations

Yuriy Golovaty,Anna Marciniak-Czochra,Mariya Ptashnyk

Single-base mismatch profiles for NGS samples

Marco Chierici,Giuseppe Jurman,Marco Roncador,Cesare Furlanello

Slow evolution of vertebrates with large genomes

Bianca Sclavi,John Herrick

Two-dimensional gel electrophoresis in proteomics: A tutorial

Thierry Rabilloud,Cécile Lelong

Identifying differentially expressed transcripts from RNA-seq data with biological variation

Peter Glaus,Antti Honkela,Magnus Rattray

High-order chromatin architecture determines the landscape of chromosomal alterations in cancer

Geoff Fudenberg,Gad Getz,Matthew Meyerson,Leonid Mirny

Role of fluctuations in membrane models: thermal versus non-thermal

Amit K. Chattopadhyay

Inference of Natural Selection from Interspersed Genomic Elements Based on Polymorphism and Divergence

Ilan Gronau,Leonardo Arbiza,Jaaved Mohammed,Adam Siepel

New alphabet-dependent morphological transition in a random RNA alignment

O. V. Valba,M. V. Tamm,S. K. Nechaev

Quantifying uniformity of mapped reads

Valerie Hower,Richard Starfield,Adam Roberts,Lior Pachter

Modeling the early steps of cytoplasmic trafficking in viral infection and gene delivery

Carlo Amoruso,Thibault Lagache,David Holcman

Chiral symmetry breaking via crystallization of the glycine and α-amino acid system: a mathematical model

Celia Blanco,David Hochberg

Growth of bioluminescent bacteria under modelled gravity of different astronomical bodies in the Solar system

Santosh Bhaskaran,Rohan Dudhale,Jyotsana Dixit,Ajit Sahasrabuddhe,Pandit B. Vidyasagar

Michaelis-Menten dynamics of a polymer chain out of a dichotomous ATP-based motor

Alessandro Fiasconaro,Juan José Mazo,Fernando Falo

Dynamics and Processing in Finite Self-Similar Networks

Simon DeDeo,David C. Krakauer

Concordant Chemical Reaction Networks

Guy Shinar,Martin Feinberg

Consequences of local inter-strand dehybridization for large-amplitude bending fluctuations of double-stranded DNA

David A. Sivak,Phillip L. Geissler

Uncovering the hidden geometry behind metabolic networks

M. Angeles Serrano,Marian Boguna,Francesc Sagues

Dynamics of cooperativity in chemical sensing among cell-surface receptors

Monica Skoge,Yigal Meir,Ned S. Wingreen

Tropical geometries and dynamics of biochemical networks. Application to hybrid cell cycle models

Vincent Noel,Dima Grigoriev,Sergei Vakulenko,Ovidiu Radulescu

A linear elimination framework

Jeremy Gunawardena

Soliton concepts and the protein structure

Andrei Krokhotin,Antti J. Niemi,Xubiao Peng

Looking for packing units of the protein structure

Wei-Mou Zheng,Hui Zeng,Dong-Bo Bu,Ming-Fu Shao,Ke-Song Liu,Chao Wang

Phase Transition in an Exactly Solvable Extinction Model

Debarshee Bagchi,P. K. Mohanty

A pulse fishery model with closures as function of the catch: Conditions for sustainability

Fernando Córdova-Lepe,Rodrigo del Valle,Gonzalo Robledo

Experimental Researches of Cutaneous Melanoma Immunotherapy by Antitumor Cell-Whole GM-CSF-Producing Vaccines

I. V. Manina,N. M. Peretolchina,N. S. Saprikina,A. M. Kozlov,I. N. Mikhaylova,A. Yu. Barishnikov

A Quantitative Test of Population Genetics Using Spatio-Genetic Patterns in Bacterial Colonies

Kirill S. Korolev,Joao B. Xavier,David R. Nelson,Kevin R. Foster

WKB calculation of an epidemic outbreak distribution

Andrew J. Black,Alan J. McKane

Environ centrality reveals the tendency of indirect effects to homogenize the functional importance of species in ecosystems

Sarah L. Fann,Stuart R. Borrett

Competition of individual and institutional punishments in spatial public goods games

Attila Szolnoki,Gyorgy Szabo,Lilla Czako

Predicting template-based catalysis rates in a simple catalytic reaction model

Wim Hordijk,Mike Steel

The space of phylogenetic mixtures for equivariant models

Marta Casanellas,Jesus Fernandez-Sanchez,Anna Kedzierska

Mean Field description of and propagation of chaos in recurrent multipopulation networks of Hodgkin-Huxley and Fitzhugh-Nagumo neurons

Javier Baladron,Diego Fasoli,Olivier Faugeras,Jonathan Touboul

Statistical-Mechanical Measure of Stochastic Spiking Coherence in A Population of Inhibitory Subthreshold Neurons

Woochang Lim,Sang-Yoon Kim

A novel method for identification of local conformational changes in proteins

Naoto Morikawa

A Variational Approach to Parameter Estimation in Ordinary Differential Equations

Daniel Kaschek,Jens Timmer

The Limitations of Simple Gene Set Enrichment Analysis Assuming Gene Independence

Pablo Tamayo,George Steinhardt,Arthur Liberzon,Jill P. Mesirov

Link between allosteric signal transduction and functional dynamics in a multi-subunit enzyme: S-adenosylhomocysteine hydrolase

Yoonji Lee,Lak Shin Jeong,Sun Choi,Changbong Hyeon

Controlled self-assembly of peptides on graphite via rational mutation

Christopher R. So,Yuhei Hayamizu,Hilal Yazici,Carolyn Gresswell,Dmitriy Khatayevich,Candan Tamerler,Mehmet Sarikaya

Probing biological light-harvesting phenomena by optical cavities

Filippo Caruso,Semion K. Saikin,Enrique Solano,Susana F. Huelga,Alán Aspuru-Guzik,Martin B. Plenio

Prospects of using Antagonist Histamine H2-Receptor (Cimetidinum) as Adjuvant for Melanoma Biotherapy Treatment

I. V. Manina,N. M. Peretolchina,N. S. Saprikina,A. M. Kozlov,I. N. Mikhaylova,K. I. Jordanya A. Y. Barishnikov

A chemotactic model for interaction of antagonistic microflora colonies: front asymptotics and numerical simulations

Carlos Malaga,Antonmaria Minzoni,Ramon G. Plaza,Chiara Simeoni

Limitations of the stochastic quasi-steady-state approximation in open biochemical reaction networks

Philipp Thomas,Arthur V. Straube,Ramon Grima

COLoR - Coordinated On-Line Rankers for Network Reconstruction

Ossnat Bar-Shira,Gal Chechik

Membrane clustering and the role of rebinding in biochemical signaling

Andrew Mugler,Aimee Gotway Bailey,Koichi Takahashi,Pieter Rein ten Wolde

Network architectural conditions for prominent and robust stochastic oscillations

Jaewook Joo,Jinmyung Choi

Automated RNA structure prediction uncovers a missing link in double glycine riboswitches

Wipapat Kladwang,Fang-Chieh Chou,Rhiju Das

Correcting pervasive errors in RNA crystallography through enumerative structure prediction

Fang-Chieh Chou,Parin Sripakdeevong,Sergey M. Dibrov,Thomas Hermann,Rhiju Das

About the Neuronal Mechanism of Lateral Hypothalamic Self-Stimulation Response

Sergey E. Murik

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