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Quantitative Biology

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主页: http://arxiv.org/archive/q-bio

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Substrate-Enzyme Interaction in Pig Liver Esterase

Daniel Hasenpusch,Daniel M？ller,Uwe T. Bornscheuer,Walter Langel

On the Clausius formulation of the second law in stationary chemical networks through the theorems of the alternative

Daniele De Martino

Nonspecific Protein-DNA Binding Is Widespread in the Yeast Genome

Ariel Afek,David B. Lukatsky

Controlling the folding and substrate-binding of proteins using polymer brushes

Brenda M. Rubenstein,Ivan Coluzza,Mark A. Miller

Soluble oligomerization provides a beneficial fitness effect on destabilizing mutations

Shimon Bershtein,Wanmeng Mu,Eugene I. Shakhnovich

Stripe formation in bacterial systems with density-suppressed motility

Xiongfei Fu,Lei-Han Tang,Chenli Liu,Jian-Dong Huang,Terence Hwa,Peter Lenz

Synthetic spatially graded Rac activation drives directed cell polarization and locomotion

Benjamin Lin,William R. Holmes,ChiaoChun Wang,Tasuku Ueno,Andrew Harwell,Leah Edelstein-Keshet,Takanari Inoue,Andre Levchenko and

mGluR5 Knockout mice exhibit normal conditioned place-preference to cocaine

Melissa A. Fowler,Andrew L. Varnell,Donald C. Cooper

Tensegrity and Motor-Driven Effective Interactions in a Model Cytoskeleton

Shenshen Wang,Peter G. Wolynes

Predicting Fixation Tendencies of the H3N2 Influenza Virus by Free Energy Calculation

Keyao Pan,Michael W. Deem

McGenus: A Monte Carlo algorithm to predict RNA secondary structures with pseudoknots

M. Bon,C. Micheletti,H. Orland

Numerical study of linear and circular model DNA chains confined in a slit: metric and topological properties

C. Micheletti,E. Orlandini

Evolutionary Processes in Finite Populations

Dirk M. Lorenz,Jeong-Man Park,Michael W. Deem

Natural selection. IV. The Price equation

Steven A. Frank

Stochastic delocalization of finite populations

Lukas Geyrhofer,Oskar Hallatschek

Coupling methods for efficient simulation of spatial population dynamics

Ilmari Karonen

Outbreak size distributions in epidemics with multiple stages

Tibor Antal,P. L. Krapivsky

Phase lagging model of brain response to external stimuli - modeling of single action potential

Karthik Seetharaman,Hamidreza Namazi,Vladimir V. Kulish

Diffusion Based Modeling of Human Brain Response to External Stimuli

Hamidreza Namazi,Vladimir V. Kulish

Optimal Channel Efficiency in a Sensory Network

Thiago S. Mosqueiro,Leonardo P. Maia

Control over stress induces plasticity of individual prefrontal cortical neurons: A conductance-based neural simulation

Juan A. Varela,Jungang Wang,Andrew L. Varnell,Donald C. Cooper

The Effect of Differentiation of Prey Community on Stable Coexistence in a Three-Species Food--Web Model

E. Shchekinova,M. G. J. L？der,M. Boersma,K. H. Wiltshire

The Fleming-Viot limit of an interacting spatial population with fast density regulation

Ankit Gupta

Predicting Phenotype from Genotype Through Automatically Composed Petri Nets

Mary Ann Bl？tke,Monika Heiner,Wolfgang Marwan

The effect of temporal pattern of injury on disability in learning networks

Mohammadkarim Saeedghalati,Abdolhossein Abbassian

Origins of Binary Gene Expression in Post-transcriptional Regulation by MicroRNAs

Indrani Bose,Sayantari Ghosh

The Structure of Autocatalytic Sets: Evolvability, Enablement, and Emergence

Wim Hordijk,Mike Steel,Stuart Kauffman

Stability of Boolean Multilevel Networks

Emanuele Cozzo,Alex Arenas,Yamir Moreno

Mechanism of helicase translocation along nucleic acid

Yunxin Zhang

Retinal metric: a stimulus distance measure derived from population neural responses

Ga？per Tka？ik,Einat Granot-Atedgi,Ronen Segev,Elad Schneidman

Global phase portrait of a SIS model

Regilene D. S. Oliveira,Alex C. Rezende

Analysis of a Mixture Model of Tumor Growth

John Lowengrub,Edriss S. Titi,Kun Zhao

How input fluctuations reshape the dynamics of a biological switching system

Bo Hu,David A. Kessler,Wouter-Jan Rappel,Herbert Levine

Avoid Internal Loops in Steady State Flux Space Sampling

Lu Xie

Euclidean distance geometry and applications

Leo Liberti,Carlile Lavor,Nelson Maculan,Antonio Mucherino

Reconstruction of the 3D structure and developmental history of plant cells and tissues

Ivan V. Rudskiy,Nadejda V. Khodorova

Blank measurement based time-alignment in LC-MS

Jan Urban

TIGRESS: Trustful Inference of Gene REgulation using Stability Selection

Anne-Claire Haury,Fantine Mordelet,Paola Vera-Licona,Jean-Philippe Vert

Structural Fluctuation of Protein in Water around Its Native State: A New Statistical Mechanics Formulation

Bongsoo Kim,Fumio Hirata

Uncovering hidden macromolecular dynamics with Modulated Orientation Sensitive Terahertz Spectroscopy

Rohit Singh,Deepu Koshy George,Andrea Markelz

Florigenic and antiflorigenic signalling in plants

I. G. Matsoukas,A. J. Massiah,B. Thomas

Cellular compartments cause multistability in biochemical reaction networks and allow cells to process more information

Heather A. Harrington,Elisenda Feliu,Carsten Wiuf,Michael M. P. Stumpf

Orientation Sensitive Terahertz Resonances Observed in Protein Crystals

Gheorghe Acbas,Edward Snell,A. G. Markelz

DNA as a one-dimensional chiral material. II. Dynamics of the structural transition between B form and Z form

Teruaki Okushima,Hiroshi Kuratsuji

Analytical Solution of the Proprio-Graviceptive equation for shoot gravitropism of plants

Renaud Bastien,Bruno Moulia,Stéphane Douady,Tomas Bohr

Single molecule thermodynamics of ATP synthesis by F$_1$-ATPase

Shoichi Toyabe,Eiro Muneyuki

A Simple Laser-Based Device for Simultaneous Microbial Culture and Absorbance Measurement

X. C. Abrevaya,E. Cortón,O. Areso,P. J. D. Mauas

Stability of the genetic code and optimal parameters of amino acids

V. R. Chechetkin,V. V. Lobzin

Semiparametric Relative-risk Regression for Infectious Disease Data

Eben Kenah

Associative memory of phase-coded spatiotemporal patterns in leaky Integrate and Fire networks

Silvia Scarpetta,Ferdinando Giacco

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