Ten Simple Rules for Effective Computational Research

DOI: doi/10.1371/journal.pcbi.1003506

Full-Text   Cite this paper   Add to My Lib

Abstract:

References

[1]	Kumar S, Dudley J (2007) Bioinformatics software for biologists in the genomics era. Bioinformatics 23: 1713–1717 doi:10.1093/bioinformatics/btm239.
[2]	Karr JR, Sanghvi JC, Macklin DN, Gutschow MV, Jacobs JM, et al. (2012) A Whole-Cell Computational Model Predicts Phenotype from Genotype. Cell 150: 389–401 doi:10.1016/j.cell.2012.05.044.
[3]	Mirams GR, Arthurs CJ, Bernabeu MO, Bordas R, Cooper J, et al. (2013) Chaste: an open source C++ library for computational physiology and biology. PLOS Comput Biol 9: e1002970 doi:10.1371/journal.pcbi.1002970.
[4]	Dalchau N, Phillips A, Goldstein LD, Howarth M, Cardelli L, et al. (2011) A peptide filtering relation quantifies MHC class I peptide optimization. PLOS Comput Biol 7: e1002144 doi:10.1371/journal.pcbi.1002144.
[5]	Bernabeu MO, Nash RW, Groen D, Carver HB, Hetherington J, et al. (2013) Impact of blood rheology on wall shear stress in a model of the middle cerebral artery. Interface Focus 3: 20120094 doi:10.1098/rsfs.2012.0094.
[6]	Mozilla Science Lab (2013) Software Carpentry. Available: http://software-carpentry.org/. Accessed 18 March 2013.
[7]	Prli？ A, Procter JB (2012) Ten simple rules for the open development of scientific software. PLOS Comput Biol 8: e1002802 doi:10.1371/journal.pcbi.1002802.
[8]	Dall'Olio GM, Marino J, Schubert M, Keys KL, Stefan MI, et al. (2011) Ten simple rules for getting help from online scientific communities. PLOS Comput Biol 7: e1002202 doi:10.1371/journal.pcbi.1002202.
[9]	Michaut M (2011) Ten simple rules for getting involved in your scientific community. PLOS Comput Biol 7: e1002232 doi:10.1371/journal.pcbi.1002232.
[10]	Chang G, Roth CB, Reyes CL, Pornillos O, Chen Y, et al. (2006) Retraction. Science 314: 1875 doi:10.1126/science.314.5807.1875b.
[11]	Pitt-Francis J, Bernabeu MO, Cooper J, Garny A, Momtahan L, et al. (2008) Chaste: Using agile programming techniques to develop computational biology software. Phil Trans R Soc A 366: 3111–3136 doi:10.1098/rsta.2008.0096.
[12]	Hayden EC (2013) Mozilla plan seeks to debug scientific code. Nature 501: 472 doi:10.1038/501472a.
[13]	Bourne PE (2005) Ten simple rules for getting published. PLOS Comput Biol 1: e57 doi:10.1371/journal.pcbi.0010057.
[14]	Vicens Q, Bourne PE (2009) Ten simple rules to combine teaching and research. PLOS Comput Biol 5: e1000358 doi:10.1371/journal.pcbi.1000358.

Full-Text