| [1] | Winder M, Schindler D. E (2004) Climate change uncouples trophic interactions in an aquatic ecosystem. Ecology 85: 2100–2106.
|
| [2] | Davis M. B, Shaw R. G, Etterson J. R (2005) Evolutionary responses to changing climate. Ecology 86: 1704–1714.
|
| [3] | Berg M. P, Kiers E. T, Driessen G, Van Der Heijden M, Kooi B. W, et al. (2010) Adapt or disperse: understanding species persistence in a changing world. Glob Change Biol 16: 587–598.
|
| [4] | de Mazancourt C, Johnson E, Barraclough T. G (2008) Biodiversity inhibits species' evolutionary responses to changing environments. Ecol Lett 11: 380–388.
|
| [5] | Johansson J (2008) Evolutionary responses to environmental changes: how does competition affect adaptation? Evolution 62: 421–435.
|
| [6] | Yoshida T, Jones L. E, Ellner S. P, Fussmann G. F, Hairston N. G (2003) Rapid evolution drives ecological dynamics in a predator-prey system. Nature 424: 303–306.
|
| [7] | Bonsall M. B, Jansen V. A. A, Hassell M. P (2004) Life history trade-offs assemble ecological guilds. Science 306: 111–114.
|
| [8] | Fussmann G. F, Loreau M, Abrams P. A (2007) Eco-evolutionary dynamics of communities and ecosystems. Funct Ecol 21: 465–477.
|
| [9] | Ozgul A Tuljapurkar S, Benton T. G, Pemberton J. M, Clutton-Brock T. H, et al. (2009) The dynamics of phenotypic change and the shrinking sheep of St. Kilda. Science 325: 464–467.
|
| [10] | Gravel D, Bell T, Barbera C, Bouvier T, Pommier T, et al. (2011) Experimental niche evolution alters the strength of the diversity-productivity relationship. Nature 469: 89–92.
|
| [11] | Thompson J. N (2005) Geographic mosaic of coevolution. Chicago: University of Chicago Press.
|
| [12] | Siepielski A. M, Benkman C. W (2007) Extreme environmental variation sharpens selection that drives the evolution of a mutualism. Proc R Soc Lond B 274: 1799–1805.
|
| [13] | Liow L. H, Van Valen L, Stenseth N. C (2011) Red Queen: from populations to taxa and communities. TREE 26: 349–358.
|
| [14] | Schluter D, Price T. D, Grant P. R (1985) Ecological character displacement in Darwin's finches. Science 227: 1056–1059.
|
| [15] | Rich S. S, Bell A. E, Wilson S. P (1979) Genetic drift in small populations of Tribolium. Evolution 33: 579–584.
|
| [16] | Collins S (2011) Competition limits adaptation and productivity in a photosynthetic alga at elevated CO2. Proc R Soc Lond B 278: 247–255.
|
| [17] | Agrawal A. A, Straus S. Y, Stout M. J (1999) Costs of induced responses and tolerance to herbivory in male and female fitness components of wild radish. Evolution 53: 1093–1104.
|
| [18] | Fine P. V. A, Miller Z. J, Mesones I, Irazuzta S, Appel H. M, et al. (2006) The growth-defense trade-off and habitat specialization by plants in Amazonian forests. Ecology 87: S150–S162.
|
| [19] | Ridenhour B. J (2005) Identification of selective sources: partitioning selection based on interactions. Am Nat 166: 12–25.
|
| [20] | Benkman C. W, Parchman T. L (2009) Coevolution between crossbills and black pine: the importance of competitors, forest area and resource stability. J Evol Biol 22: 942–953.
|
| [21] | Brockhurst M. A, Colegrave N, Hodgson D. J, Buckling A (2007) Niche occupation limits adaptive radiation in experimental microcosms. PLoS One 2: e193. doi:10.1371/journal.pone.0000193.
|
| [22] | Perron G. G, Lee A. E. G, Wang Y, Huang W. E, Barraclough T. G (2011) Bacterial recombination promotes the evolution of multidrug-resistance in functionally diverse populations. Proc R Soc Lond B. In press.
|
| [23] | Buckling A, Rainey P. B (2002) Antagonistic coevolution between a bacterium and a bacteriophage. Proc R Soc Lond B 269: 931–936.
|
| [24] | Brockhurst M. A, Morgan A. D, Rainey P. B, Buckling A (2003) Population mixing accelerates coevolution. Ecol Lett 6: 975–979.
|
| [25] | Iwao K, Rausher M. D (1997) Evolution of plant resistance to multiple herbivores: quantifying diffuse coevolution. Am Nat 149: 316–335.
|
| [26] | Stinchcombe J. R, Rausher M. D (2001) Diffuse selection on resistance to deer herbivory in the ivyleaf morning glory, Ipomoea hederacea. Am Nat 158: 376–388.
|
| [27] | Strauss S. Y, Sahli H, Conner J. K (2005) Toward a more trait-centered approach to diffuse (co)evolution. New Phytol 165: 81–89.
|
| [28] | Siepielski A. M, Benkman C. W (2010) Conflicting selection from an antagonist and a mutualist enhances phenotypic variation in a plant. Evolution 64: 1120–1128.
|
| [29] | Ormond C. I, Rosenfeld J. S, Taylor E. B (2011) Environmental determinants of threespine stickleback species pair evolution and persistence. Can J Fish Aquat Sci 68: 1983–1997.
|
| [30] | Cadotte M. W, Cardinale B. J, Oakley T. H (2008) Evolutionary history and the effect of biodiversity on plant productivity. Proc Natl Acad Sci U S A 105: 17012–17017.
|
| [31] | Harmon L. J, Matthews B, Des Roches S, Chase J. M, Shurin J. B, et al. (2009) Evolutionary diversification in stickleback affects ecosystem functioning. Nature 458: 1167–1170.
|
| [32] | Bassar R. D, Marshall M. C, Lopez-Sepulcre A, Zandona E, Auer S. K, et al. (2010) Local adaptation in Trinidadian guppies alters ecosystem processes. Proc Natl Acad Sci U S A 107: 3616–3621.
|
| [33] | Poltak S. R, Cooper V. S (2011) Ecological succession in long-term experimentally evolved biofilms produces synergistic communities. The ISME Journal 5: 369–378.
|
| [34] | Bell T, Newman J. A, Silverman B. W, Turner S. L, Lilley A. K (2005) The contribution of species richness and composition to bacterial services. Nature 436: 1157–1160.
|
| [35] | Bell T (2010) Experimental tests of the bacterial distance decay relationship. ISME J 4: 1357–1365.
|
| [36] | Turner P. E, Souza V, Lenski R. E (1996) Tests of ecological mechanisms promoting the stable coexistence of two bacterial genotypes. Ecology 77: 2119–2129.
|
| [37] | Riley M. A, Wertz J. E (2002) Bacteriocin diversity: ecological and evolutionary perspectives. Biochimie 84: 357–364.
|
| [38] | Macarthur R, Levins R (1967) The limiting similarity, convergence, and divergence of coexisting species. Am Nat 921: 377–385.
|
| [39] | Treves D. S, Manning S, Adams J (1998) Repeated evolution of an acetate-crossfeeding polymorphism in long-term populations of Escherichia coli. Mol Biol Evol 15(7): 789–797.
|
| [40] | Jasmin J. N, Kassen R (2007) On the experimental evolution of specialization and diversity in heterogeneous environments. Ecol Lett 10: 272–281.
|
| [41] | West S. A, Diggle S. P, Buckling A, Gardner A, Griffins A. S (2007) The social lives of microbes. Annu Rev Ecol Evol Syst 38: 53–77.
|
| [42] | Behrends V, Ebbels T. M. D, Williams H. D, Bundy J. G (2009) Time-resolved metabolic footprinting for non-linear modelling of bacterial substrate utilization. Appl Environ Microbiol 75: 2453–2463.
|
| [43] | Gomez P, Buckling A (2011) Bacteria-phage antagonistic coevolution in soil. Science 332: 106–109.
|
| [44] | Loreau M, Hector A (2001) Partitioning selection and complementarity in biodiversity experiments. Nature 412: 72–76.
|
| [45] | Cardinale B. J (2011) Biodiversity improves water quality through niche partitioning. Nature 472: 86–89.
|
| [46] | Venail P. A, MacLean R. C, Bouvier T, Brockhurst M. A, Hochberg M. E, et al. (2008) Diversity and productivity peak at intermediate dispersal rate in evolving metacommunities. Nature 452: 210–214.
|
| [47] | Williams H. T. P, Lenton T. M (2010) Evolutionary regime shifts in simulated ecosystems. OIKOS 119: 1887–1899.
|
| [48] | Hughes A. R, Inouye B. D, Johnson M. T. J, Underwood N, Velland M (2008) Ecological consequences of genetic diversity. Ecol Lett 11: 609–623.
|
| [49] | Srivastava D. S (2005) Do local processes scale to global patterns? The role of drought and the species pool in determining treehole insect diversity. Oecologia 145: 205–215.
|
| [50] | Vos M, Birkett P. J, Birch E, Griffiths R. I, Buckling A (2009) Local adaptation of bacteriophages to their bacterial hosts in soil. Science 325: 833.
|
| [51] | Futuyma D. J, Agrawal A. A (2009) Macroevolution and the biological diversity of plants and herbivores. Proc Natl Acad Sci U S A 106: 18054–18061.
|
| [52] | Perron G. G, Gonzalez A, Buckling A (2007) Source-sink dynamics shape the evolution of antibiotic resistance and its pleiotropic fitness cost. Proc R Soc Lond B 274: 2351–2356.
|
| [53] | Altschul S. F, Gish W, Miller W, Myers E. W, Lipman D. J (1990) Basic local alignment search tool. J Mol Biol 215: 403–410.
|
| [54] | Beckonert O, Keun H. C, Ebbels T. M. D, Bundy J. G, Holmes E, et al. (2007) Metabolic profiling, metabolomic and metabonomic procedures for NMR spectroscopy of urine, plasma, serum and tissue extracts. Nat Protoc 2: 2692–2703.
|
| [55] | R Development Core Team (2011) R: a language and environment for statistical computing. http://www.R-project.org.
|
| [56] | Campbell C. D, Chapman S. J, Cameron C. M, Davidson M. S, Potts J. M (2003) A rapid microtiter plate method to measure carbon dioxide evolved from carbon substrate amendments so as to determine the physiological profiles of soil microbial communities by using whole soil. Appl Environ Microb 69: 3593–3599.
|
| [57] | Daalgard P, Ross T, Kamperman L, Neumeyer K, McMeekin T. A (1994) Estimation of bacterial growth rates from turbidimetric and viable count data. Int J Food Microbiol 23: 303–306.
|