|
基于网络药理学和分子对接分析防己茯苓汤治疗脓毒症急性肾损伤的作用机制
|
Abstract:
目的:采用网络药理学和分子对接技术,对防己茯苓汤治疗脓毒症AKI的作用机制进行预测性研究。方法:先通过TCMSP数据库收集防己茯苓汤中药物组成的活性成分,SwissTargetPrediction搜索活性成分所作用的靶点蛋白。再通过GeneCards、PharmGKb、数据库、TTD数据库收集脓毒症AKI靶点蛋白,选择药物成分以及对应的靶点蛋白,利用Cytoscape构建药物–成分–靶点–疾病网络,将药物–疾病交集靶点录入STRING分析后导入Cytoscape软件,进一步构建PPI网络图。在DAVID平台获取交集靶点的作图数据,在微生信平台进行GO富集分析和KEGG通路分析。最后使用MOE和Pymol进行分子对接和渲染。结果:筛选出防己茯苓汤活性成分126种及药物靶点993个,疾病靶点3301个,防己茯苓汤治疗脓毒症AKI作用靶点448个,其中联苯双酯、(E)-1-(2,4-二羟基苯基)-3-(2,2-二甲基色烯-6-基)丙-2-烯-1-酮、四脉银胶菊素A、β-谷甾醇、茯苓酸A为治疗疾病的核心成分,AKT1、TNF、TP53、CASP3、MAPK3为治疗疾病的核心靶点。GO富集分析得到1742个结果,主要富集于蛋白质磷酸化、磷酸化作用、炎症反应、ATP结合、蛋白丝氨酸激酶活性等过程,KEGG通路分析得到189条通路,主要通路为癌症通路、脂质和动脉粥样硬化、乙型肝炎等。分子对接验证了药物成分和疾病靶点蛋白有良好的结合能力。其中核心靶点TP53与β-谷甾醇的结合能最小,为?7.95 kg/mol。结论:本研究采用网络药理学和分子对接技术,预测性地研究了防己茯苓汤通过多成分–多靶点–多通路治疗脓毒症AKI的机制,为临床治疗脓毒症AKI提供了证明,并为进一步提高该类病症的临床治疗效果提供了参考。
Objective: To predict the mechanism of action of Fangji Fuling Decoction in treating sepsis-induced AKI by using network pharmacology and molecular docking technology. Methods: The active ingredients of Fangji Fuling Decoction were first collected through the TCMSP database, and the target proteins acted by the active ingredients were searched by SwissTargetPrediction. Then, the target proteins of sepsis-induced AKI were collected through GeneCards, PharmGKb, database, and TTD database, and the drug ingredients and corresponding target proteins were selected. The drug-ingredient-target-disease network was constructed using Cytoscape. The drug-disease intersection targets were entered into STRING analysis and then imported into Cytoscape software to further construct the PPI network diagram. The mapping data of the intersection targets were obtained on the DAVID platform, and GO enrichment analysis and KEGG pathway analysis were performed on the Microbiological Information Platform. Finally, MOE and Pymol were used for molecular docking and rendering. Results: A total of 126 active ingredients and 993 drug targets, 3301 disease targets of Fangji Fuling Decoction were screened, and 448 targets of Fangji Fuling Decoction in the treatment of sepsis AKI were found, among which bifendate, (E)-1-(2,4-dihydroxyphenyl)-3-(2,2-dimethylchromen-6-yl)prop-2-en-1-one,guaiacin A, β-sitosterol, and pachymic acid A were the core components for the treatment of diseases, and AKT1, TNF, TP53, CASP3, and MAPK3 were the core targets for the treatment of diseases. GO enrichment analysis obtained 1742
[1] | Ren, Z., Ding, X., Wang, Y., Wu, H., Liu, X., Cao, Y., et al. (2024) A Pro-Healing Short-Chain Antimicrobial Peptide That Inhibits Sepsis. Science China Materials, 67, 3727-3741. https://doi.org/10.1007/s40843-024-3002-0 |
[2] | Deng, C., Zhao, L., Yang, Z., Shang, J., Wang, C., Shen, M., et al. (2021) Targeting HMGB1 for the Treatment of Sepsis and Sepsis-Induced Organ Injury. Acta Pharmacologica Sinica, 43, 520-528. https://doi.org/10.1038/s41401-021-00676-7 |
[3] | Yan, J., Zhang, J., Wang, Y., Liu, H., Sun, X., Li, A., et al. (2023) Rapidly Inhibiting the Inflammatory Cytokine Storms and Restoring Cellular Homeostasis to Alleviate Sepsis by Blocking Pyroptosis and Mitochondrial Apoptosis Pathways. Advanced Science, 10, Article ID: 2207448. https://doi.org/10.1002/advs.202207448 |
[4] | 王亚丽, 周晋萌, 王美霞, 等. HP联合CVVH治疗脓毒症相关急性肾损伤患者预后不良的预测模型构建[J]. 检验医学与临床, 2024, 21(18): 2664-2669. |
[5] | 黄瑞峰, 唐奇, 吕波. 基于网络药理学研究保肾排毒汤治疗脓毒症合并急性肾损伤的治疗机制[J]. 中国现代应用药学, 2019, 36(21): 2657-2665. |
[6] | 王今达, 李志军, 李银平. 从“三证三法”辨证论治脓毒症[J]. 中国危重病急救医学, 2006, 18(11): 643-644. |
[7] | 杜晓敏. 加味防己茯苓汤联合CRRT疗法对脓毒症急性肾损伤患者肾功能及血清APN、PCT、Lac水平变化的影响[J]. 中国医药导刊, 2019, 21(3): 152-156. |
[8] | 李浩杰, 王翠敏, 李叶, 等. 防己茯苓汤不同剂型治疗下肢深静脉血栓后遗症效果比较研究[J]. 现代中西医结合杂志, 2018, 27(15): 1597-1599+1614. |
[9] | 李美丹, 姚兰, 梁群卿, 等. 基于网络药理学的防己茯苓汤治疗急性肾损伤机制研究[J]. 中国中医基础医学杂志, 2020, 26(9): 1371-1377+1422. |
[10] | 张年, 李兆星, 李娟, 等. 茯苓的化学成分与生物活性研究进展[J]. 世界科学技术-中医药现代化, 2019, 21(2): 220-233. |
[11] | 刘山林, 瞿波, 何金室, 等. 黄芪配伍方在慢性肾脏病中的应用[J]. 中华养生保健, 2024, 42(12): 158-161. |
[12] | 李丽萍. 桂枝的药理作用分析及其临床应用研究[J]. 中国医药指南, 2017, 15(4): 180-181. |
[13] | 王博文. 防己茯苓汤加味治疗下肢淋巴水肿的临床研究[D]: [硕士学位论文]. 济南: 山东中医药大学, 2022. |
[14] | 刘莉莉, 杨丹, 王晶晶. β-谷甾醇对脂多糖诱导的乳腺上皮细胞氧化应激及乳脂合成的影响[J]. 动物营养学报, 2023, 35(12): 8013-8023. |
[15] | Abo-Zaid, O.A., Moawed, F.S., Ismail, E.S. and Farrag, M.A. (2023) Β-Sitosterol Attenuates High-Fat Diet-Induced Hepatic Steatosis in Rats by Modulating Lipid Metabolism, Inflammation and ER Stress Pathway. BMC Pharmacology and Toxicology, 24, Article No. 31. https://doi.org/10.1186/s40360-023-00671-0 |
[16] | Ponnulakshmi, R., Shyamaladevi, B., Vijayalakshmi, P. and Selvaraj, J. (2019) In Silico and in Vivo Analysis to Identify the Antidiabetic Activity of Beta Sitosterol in Adipose Tissue of High Fat Diet and Sucrose Induced Type-2 Diabetic Experimental Rats. Toxicology Mechanisms and Methods, 29, 276-290. https://doi.org/10.1080/15376516.2018.1545815 |
[17] | Banerjee, S., Yadav, S., Aggarwal, P., Khan, F., Khodve, G., Padhy, D.S., et al. (2023) Β-Sitosterol Protects against Aluminium Chloride-Mediated Neurotoxicity. Current Alzheimer Research, 20, 29-37. https://doi.org/10.2174/1567205020666230308151443 |
[18] | 陈元堃, 曾奥, 罗振辉, 等. β-谷甾醇药理作用研究进展[J]. 广东药科大学学报, 2021, 37(1): 148-153. |
[19] | 彭斌, 冯雪, 冯立, 等. 茯苓酸对慢性肾衰竭大鼠肾功能及纤维化的影响机制[J]. 中国药房, 2024, 35(12): 1489-1494. |
[20] | 张青青, 董果雄, 张社华. 全反式维甲酸对兔颈动脉粥样硬化病灶VSMC增殖及AKT1表达影响[J]. 青岛大学医学院学报, 2010, 46(2): 135-137+139. |
[21] | Saha, S., Mahalanobish, S., Dutta, S. and Sil, P.C. (2019) Mangiferin Ameliorates Collateral Neuropathy in tbhp Induced Apoptotic Nephropathy by Inflammation Mediated Kidney to Brain Crosstalk. Food & Function, 10, 5981-5999. https://doi.org/10.1039/c9fo00329k |
[22] | 黎晨, 邓针华, 赵丽蓉, 等. 基于网络药理学和实验验证探究尿石素A治疗肾纤维化的作用机制[J]. 中国医院药学杂志, 2024, 44(5): 537-544. |
[23] | 徐纯依, 周东旭, 梁浩威, 等. 基于网络药理学和分子对接技术探讨七味白术散治疗糖尿病肾病的作用机制[J]. 浙江临床医学, 2023, 25(5): 635-639. |
[24] | 孙国林. 基于数据挖掘及网络药理学探讨《中医方剂大辞典》中治疗妊娠期高血压疾病的用药规律和作用机制[D]: [硕士学位论文]. 哈尔滨: 黑龙江中医药大学, 2023. |
[25] | Jang, D., Lee, A., Shin, H., Song, H., Park, J., Kang, T., et al. (2021) The Role of Tumor Necrosis Factor Alpha (TNF-α) in Autoimmune Disease and Current TNF-α Inhibitors in Therapeutics. International Journal of Molecular Sciences, 22, Article No. 2719. https://doi.org/10.3390/ijms22052719 |
[26] | 焦琳, 殷春霞, 夏琦, 等. 基于网络药理学与动物实验探讨参苓白术散缓解顺铂肾毒性的作用机制[J]. 中医学报, 2023, 38(6): 1273-1284. |
[27] | 孙航, 吴金海, 赵菊馨, 等. 脓毒症患者血清IL-6、TNF-α、IL-10水平及其与预后的相关性[J]. 临床医学, 2022, 42(3): 17-19. |