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Botanical Research 2020
RNA沉默拮抗类病毒
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Abstract:
[1] | 王永, 陈锐, 朱珠, 兰青阔, 赵新. 真菌RNA沉默研究进展[J]. 天津农业科学, 2014, 20(5): 5-13. |
[2] | Li, F. and Ding, S.-W. (2006) Virus Counter Defense: Diverse Strategies for Evading the RNA-Silencing Immunity. Annual Review of Microbiology, 60, 503-531. https://doi.org/10.1146/annurev.micro.60.080805.142205 https://www.annualreviews.org/doi/pdf/10.1146/annurev.micro.60.080805.142205 |
[3] | Qin, C., Li, B., Fan, Y.-Y., Zhang, X., Yu, Z.-M., Ryabov, E., Zhao, M., Wang, H., Shi, N.-N., Zhang, P.-C., Jackson, S., T?r, M., Cheng, Q., Liu, Y.-L., Gallusci, P. and Hong, Y.-G. (2017) Roles of Dicer-Like Proteins 2 and 4 in Intra- and Intercellular Antiviral Silencing. Plant Physiology, 174, 1067-1081. https://doi.org/10.1104/pp.17.00475 http://www.plantphysiol.org/content/plantphysiol/174/2/1067 |
[4] | Jones, R.M.W., Bartel, D.P. and Bartel, B. (2006) MicroRNAs and Their Regulatory Roles in Plants. Annual Review of Plant Biology, 57, 19-53. https://www.sdbonline.org/sites/2008ShortCourse/Rhoades_review.pdf
https://doi.org/10.1146/annurev.arplant.57.032905.105218 |
[5] | Jose, A.-D. (2016) Eggplant Latent Viroid: A Friendly Experimental System in the Family Avsunviroidae. Molecular Plant Pathology, 17, 1170-1177. https://www.ncbi.nlm.nih.gov/pubmed/26696449
https://doi.org/10.1111/mpp.12358 |
[6] | Martinez, F., Marques, J., Salvador, M.L. and Daròs, J.A. (2009) Mutational Analysis of Eggplant Latent Viroid RNA Processing in Chlamydomonas reinhardtii Chloroplast. Journal of General Virology, 90, 3057-3065.
https://www.researchgate.net/publication/26736586_Mutational_analysis_of_eggplant_latent_viroid_RNA_processing_in_Chlamydomonas_reinhardtii_chloroplast
https://doi.org/10.1099/vir.0.013425-0 |
[7] | Anna, G.-S. (2004) Viroids: Unusual Small Pathogenic RNAs. Acta Biochimica, 51, 587-607.
http://www.actabp.pl/pdf/3_2004/587.pdf
https://doi.org/10.18388/abp.2004_3546 |
[8] | Zhang, X., Lai, T.-F., Zhang, P.-C., Zhang, X.-L., Yuan, C., Jin, Z.-H., Li, H.-M., Yu, Z.-M., Qin, C., T?r, M., Ma, P., Cheng, Q. and Hong, Y.-G. (2019) Mini Review: Revisiting Mobile RNA Silencing in Plants. Plant Science, 278, 113-117. https://www.sciencedirect.com/science/article/pii/S016894521830640X
https://doi.org/10.1016/j.plantsci.2018.10.025 |
[9] | David, B. (2004) RNA Silencing in Plants. Nature, 431, 356-363. https://doi.org/10.1038/nature02874 https://www.sciencedirect.com/science/article/pii/S016894521830640X |
[10] | Sarkies, P. and Miska, E.A. (2014) Small RNAs Break out: The Molecular Cell Biology of Mobile Small RNAs. Nature Reviews Molecular Cell Biology, 15, 525-535. https://www.nature.com/articles/nrm3840
https://doi.org/10.1038/nrm3840 |
[11] | 曹雪松, 田野. 植物基因沉默的研究进展[J]. 聊城大学学报(自然科学版), 2010, 23(1): 45-48. |
[12] | 陈大元, 张利生. RNA干涉及其应用前景[J]. 遗传, 2003, 25(3): 341-344. |
[13] | Bender, J. (2001) A Vicious Cycle: RNA Silencing and DNA Methylation in Plants. Cell, 106, 129-132.
https://core.ac.uk/download/pdf/82155567.pdf
https://doi.org/10.1016/S0092-8674(01)00441-X |
[14] | Napoli, C., Lemieux, C. and Jorgensen, R. (1990) Introduction of a Chimeric Chalcone Synthase Gene into Petunia Results in Reversible Co-Suppression of Homologous Genes in Trans. The Plant Cell, 2, 279-289.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC159885/pdf/020279.pdf
https://doi.org/10.2307/3869076 |
[15] | 王健伟, 宋敬东, 吴围屏, 韩金祥, 洪涛. RNA干扰机制的研究进展[J]. 生物技术通讯, 2006, 17(3): 409-411. |
[16] | 韩婧. 基因沉默及克服策略[J]. 沧州师范学院学报, 2006(4): 54-55. |
[17] | Aliyari, R. and Ding, S.-W. (2009) RNA-Based Viral Immunity Initiated by the Dicer Family of Host Immune Receptors. Immunological Reviews, 227, 176-188. https://doi.org/10.1111/j.1600-065X.2008.00722.x https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2676720/pdf/nihms-106453 |
[18] | Chen, W.-W., Zhang, X., Fan, Y.-Y., Ryabov, E., Shi, N.-N., Zhao, M., Yu, Z.-M., Qin, C., Zheng, Q.-Q., Zhang, P.-C., Wang, H.-Z., Jackson, S., Cheng, Q., Liu, Y.-L., Gallusci, P. and Hong, Y.-G. (2018) A Genetic Network for Systemic RNA Silencing in Plants. Plant Physiology, 176, 2700-2719. http://www.plantphysiol.org/content/176/4/2700
https://doi.org/10.1104/pp.17.01828 |
[19] | 黄迪南, 崔世权, 侯敢. siRNA诱导基因沉默复合物(RISC)的研究[J]. 基因组学与应用生物学, 2017, 36(7): 2799-2803. |
[20] | Nakanishi, K., Weinberg, D.E., Bartel, D.P. and Patel, D.J. (2012) Structure of Yeast Argonaute with Guide RNA. Nature, 486, 368-374. https://www.nature.com/articles/nature11211
https://doi.org/10.1038/nature11211 |
[21] | Kuhn, C.D. and Joshua-Tor, L. (2013) Eukaryotic Argonautes Come into Focus. Trends in Biochemical Sciences, 38, 263-271. https://www.ncbi.nlm.nih.gov/pubmed/23541793
https://doi.org/10.1016/j.tibs.2013.02.008 |
[22] | Swarts, D.C., Makarova, K., Wang, Y.L., Nakanishi, K., Ketting, R.F., Koonin, E.V., Patel, D.J. and John, V.D.O. (2014) The Evolutionary Journey of Argonaute Proteins. Nature Structural & Molecular Biology, 21, 743-753.
https://www.nature.com/articles/nsmb.2879.pdf
https://doi.org/10.1038/nsmb.2879 |
[23] | 杜立新, 燕飞, 宋雪梅. RNA诱导沉默复合体中的生物大分子及其装配[J]. 遗传, 2006, 28(6): 761-766. |
[24] | Williams, R.W. and Rubin, G.M. (2002) Argonaute1 Is Required for Efficient RNA Interference in Drosophila Embryos. Proceedings of the National Academy of Sciences, 99, 6889-6894.
https://www.pnas.org/content/pnas/99/10/6889.full.pdf
https://doi.org/10.1073/pnas.072190799 |
[25] | 章涛, 陈代雄. RNA诱导沉默复合体(RISC)功能研究进展[J]. 遵义医学院学报, 2006, 29(2): 184-187. |
[26] | 李毅, 蒋琳, 魏春红. 病毒基因沉默抑制子及其作用机制[J]. 中国科学: 生命科学, 2012, 42(1): 16-28. |
[27] | 张飞云, 王法军, 梁越. 植物病毒沉默抑制因子研究进展[J]. 生物技术通报, 2009(2): 1-5. |
[28] | Gómez, G. and Pallás, V. (2010) Noncoding RNA Mediated Traffic of Foreign mRNA into Chloroplasts Reveals a Novel Signaling Mechanism in Plants. PLoS ONE, 5, 1517-1519.
https://www.tandfonline.com/doi/full/10.4161/psb.5.11.13711?scroll=top&needAccess=true
https://doi.org/10.1371/journal.pone.0012269 |
[29] | Molina, S.D., Suay, L., Salvador, M.L., Flores, R. and Daròs, J.A. (2007) Processing of RNAs of the Family Avsunviroidae in Chlamydomonas reinhardtii Chloroplasts. Journal of Virology, 81, 4363-4366.
https://jvi.asm.org/content/jvi/81/8/4363
https://doi.org/10.1128/JVI.02556-06 |
[30] | Gustavo, G. and Pallás, V. (2012) A Pathogenic Non Coding RNA That Replicates and Accumulates in Chloroplasts Traffics to This Organelle through a Nuclear-Dependent Step. Plant Signaling & Behavior, 7, 882-884.
https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3583980
https://doi.org/10.4161/psb.20463 |
[31] | Landry, P. and Perreault, J.P. (2005) Identification of a Peach Latent Mosaic Viroid Hairpin Able to Act as a Dicer-Like Substrate. Journal of Virology, 79, 6540-6543. https://doi.org/10.1128/JVI.79.10.6540-6543.2005 |
[32] | 黄家风, 许文博. 植物类病毒研究进展[J]. 石河子大学学报(自然科学版), 2007, 25(3): 18-23. |
[33] | Nohales, M.A., Molina, S.D., Flores, R. and Daròs, J.A. (2012) Involvement of the Chloroplastic Isoform of tRNA Ligase in the Replication of Viroids Belonging to the Family Avsunviroidae. Journal of Virology, 86, 8269-8276.
https://jvi.asm.org/content/jvi/early/2012/05/16/JVI.00629-12.full.pdf
https://doi.org/10.1128/JVI.00629-12 |
[34] | Gómez, G. and Pallás, V. (2012) Studies on Subcellular Compartmentalization of Plant Pathogenic Noncoding RNAs Give New Insights into the Intracellular RNA-Traffic Mechanisms. Plant Physiology, 7, 882-884.
http://www.plantphysiol.org/content/159/2/558
https://doi.org/10.1104/pp.112.195214 |
[35] | Ding, B. (2009) The Biology of Viroid-Host Interactions. Annual Review of Phytopathology, 47, 105-131.
https://www.annualreviews.org/doi/pdf/10.1146/annurev-phyto-080508-081927
https://doi.org/10.1146/annurev-phyto-080508-081927 |
[36] | Ding, B. and Itaya, A. (2007) Viroid: A Useful Model for Studying the Basic Principles of Infection and RNA Biology. Molecular Plant-Microbe Interactions, 20, 7-20. https://apsjournals.apsnet.org/doi/10.1094/MPMI-20-0007
https://doi.org/10.1094/MPMI-20-0007 |
[37] | Flores, R., Hernández, C., Alba, A.E., Mde, Daròs, J.A. and Serio, F.D. (2005) Viroids and Viroid-Host Interactions. Annual Review of Phytopathology, 43, 117-139. https://doi.org/10.1146/annurev.phyto.43.040204.140243 https://www.annualreviews.org/doi/full/10.1146/annurev.phyto.43.040204.140243 |
[38] | Tabler, M. and Tsagris, M. (2004) Viroids: Petite RNA Pathogens with Distinguished Talents. Trends in Plant Science, 9, 339-348. https://cals.arizona.edu/mycoherb/arnoldlab/teaching/2011%20stuff/Viroids.pdf
https://doi.org/10.1016/j.tplants.2004.05.007 |
[39] | Csorba, T., Kontra, L. and Burgyán, J. (2015) Viral Silencing Suppressors: Tools Forged to Fine-Tune Host-Pathogen Coexistence. Virology, 479, 85-103. http://real.mtak.hu/26668/1/2015_VSR_Virology.pdf
https://doi.org/10.1016/j.virol.2015.02.028 |