G-Quadruplex (G-4) structures are formed when G-rich DNA sequences fold into intra- or intermolecular four-stranded structures in the presence of metal ions. G-4-hemin complexes are often effective peroxidase-mimicking DNAzymes that are applied in many detection systems. This work reports the application of a G-rich daunomycin-specific aptamer for the development of an antibody-antigen detection assay. We investigated the ability of the daunomycin aptamer to efficiently catalyze the hemin-dependent peroxidase activity independent of daunomycin. A reporter probe consisting of biotinylated antigen and daunomycin aptamer coupled to streptavidin gold nanoparticles was successfully used to generate a colorimetric readout. In conclusion, the daunomycin aptamer can function as a robust alternative DNAzyme for the development of colorimetric assays.
References
[1]
Proske, D.; Blank, M.; Buhmann, R.; Resch, A. Aptamers—Basic research, drug development, and clinical applications. Appl. Microbiol. Biotechnol. 2005, 69, 367–374.
[2]
Balasubramanian, S.; Hurley, L.H.; Neidle, S. Targeting G-quadruplexes in gene promoters: A novel anticancer strategy? Nat. Rev. Drug Discov. 2011, 10, 261–275.
[3]
Templin, M.F.; Stoll, D.; Schrenk, M.; Traub, P.C.; V?hringer, C.F.; Joos, T.O. Protein microarray technology. Drug Discov. Today 2002, 7, 815–822.
[4]
Neidle, S.; Read, M.A. G-quadruplexes as therapeutic targets. Biopolymers 2000, 56, 195–208.
[5]
White, R.R.; Sullenger, B.A.; Rusconi, C.P. Developing aptamers into therapeutics. J. Clin. Investig. 2000, 106, 929–934.
[6]
Balogh, Z.; Lautner, G.; Bardóczy, V.; Komorowska, B.; Gyurcsányi, R.E.; Mészáros, T. Selection and versatile application of virus-specific aptamers. FASEB J. 2010, 24, 4187–4195.
Von Hoff, D.D.; Rozencweig, M.; Slavik, M. Daunomycin: An anthracycline antibiotic effective in acute leukemia. Adv. Pharmacol. 1978, 15, 1–50.
[9]
Chaires, J.B.; Fox, K.R.; Herrera, J.E.; Britt, M.; Waring, M.J. Site and sequence specificity of the daunomycin-DNA interaction. Biochemistry 1987, 26, 8227–8236.
[10]
Wochner, A.; Menger, M.; Orgel, D.; Cech, B.; Rimmele, M.; Erdmann, V.A.; Glokler, J. A DNA aptamer with high affinity and specificity for therapeutic anthracyclines. Anal. Biochem. 2008, 373, 34–42.
[11]
Li, C.L.; Liu, K.T.; Lin, Y.W.; Chang, H.T. Fluorescence detection of lead (II) ions through their induced catalytic activity of DNAzymes. Anal. Chem.-Columb 2011, 83, 225.
[12]
Saito, K.; Tai, H.; Hemmi, H.; Kobayashi, N.; Yamamoto, Y. Interaction between the heme and a G-quartet in a heme–DNA complex. Inorg. Chem. 2012, 51, 8168–8176.
[13]
Saito, K.; Nakano, Y.; Tai, H.; Nagatomo, S.; Hemmi, H.; Mita, H.; Yamamoto, Y. Characterization of heme coordination structure in heme-DNA complex possessing gaseous molecule as an exogenous ligand. Nucleic Acid. Symp. Ser. 2009, 53, 241–242.
[14]
Zhu, X.; Cao, Y.; Liang, Z.; Li, G. Aptamer-based and DNAzyme-linked colorimetric detection of cancer cells. Prot. Cell. 2010, 1, 842–846.
[15]
Wang, J.; Cao, Y.; Chen, G.; Li, G. Regulation of thrombin activity with a bifunctional aptamer and hemin: Development of a new anticoagulant and antidote pair. ChemBioChem. 2009, 10, 2171–2176.
[16]
Wu, P.; Hwang, K.; Lan, T.; Lu, Y. A DNAzyme-gold nanoparticle probe for uranyl ion in living cells. J. Am. Chem. Soc. 2013, 135, 5254–5257.
[17]
Zhu, Y.; Xu, L.; Ma, W.; Chen, W.; Yan, W.; Kuang, H.; Wang, L.; Xu, C. G-quadruplex DNAzyme-based microcystin-LR (toxin) determination by a novel immunosensor. Biosens. Bioelectron. 2011, 26, 4393–4398.
[18]
Zong, C.; Wu, J.; Xu, J.; Ju, H.; Yan, F. Multilayer hemin/G-quadruplex wrapped gold nanoparticles as tag for ultrasensitive multiplex immunoassay by chemiluminescence imaging. Biosens. Bioelectron. 2013, 43, 372–378.
[19]
Li, D.; Ying, Y.; Wu, J.; Niessner, R.; Knopp, D. Comparison of monomeric and polymeric horseradish peroxidase as labels in competitive ELISA for small molecule detection. Microchim. Acta. 2013, 180, 711–717.
[20]
Li, T.; Wang, E.; Dong, S. A Grafting strategy for the design of improved G-quadruplex aptamers and high-activity DNAzymes. PLoS One 2009, 4, e5126.
Li, T.; Dong, S.; Wang, E. G-quadruplex aptamers with peroxidase-like DNAzyme functions: Which is the best and how does it work? Chem. Asian J. 2009, 4, 918–922.
[23]
Liu, W.; Zheng, B.; Cheng, S.; Fu, Y.; Li, W.; Lau, T.C.; Liang, H. G-quadruplex formation and sequence effect on the assembly of G-rich oligonucleotides induced by Pb2+ ions. Soft Matter 2012, 8, 7107–7123.