[1] | Wilson BS, Pfeiffer JR, Oliver JM (2000) Observing FceRI Signaling from the Inside of the Mast Cell Membrane. J Cell Biol 149: 1131–1142 ST – Observing FceRI Signaling from the. Available: http://jcb.rupress.org/cgi/content/abstr?act/149/5/1131.
|
[2] | Wilson BS, Pfeiffer JR, Surviladze Z, Gaudet EA, Oliver JM (2001) High resolution mapping of mast cell membranes reveals primary and secondary domains of FceRI and LAT. The Journal of Cell Biology 154: 645–658 Available: http://jcb.rupress.org/content/154/3/645?.abstract.
|
[3] | Stump RF, Pfeiffer JR, Schneebeck MC, Seagrave JC, Oliver JM (1989) Mapping gold-labeled receptors on cell surfaces by backscattered electron imaging and digital image analysis: studies of the IgE receptor on mast cells. The American journal of anatomy 185: 128–141 Available: http://www.ncbi.nlm.nih.gov/pubmed/27738?08 Accessed 14 March 2012.
|
[4] | Seagrave J, Pfeiffer JR, Wofsy C, Oliver JM (1991) Relationship of IgE receptor topography to secretion in RBL-2H3 mast cells. Journal of cellular physiology 148: 139–151 Available: http://www.ncbi.nlm.nih.gov/pubmed/18305?92 Accessed 6 March 2012.
|
[5] | Veatch SL, Chiang EN, Sengupta P, Holowka DA, Baird BA (2012) Quantitative Nano-Scale Analysis of IgE-FcεRI Clustering and Coupling to Early Signaling Proteins. The journal of physical chemistry B Available: http://dx.doi.org/10.1021/jp300197p Accessed 22 March 2012.
|
[6] | Veatch SL, Machta BB, Shelby SA, Chiang EN, Holowka DA, et al. (2012) Correlation functions quantify super-resolution images and estimate apparent clustering due to over-counting. PloS one 7: e31457 Available: http://dx.plos.org/10.1371/journal.pone.?0031457 Accessed 9 March 2012.
|
[7] | Hell SW (2007) Far-field optical nanoscopy. Science (New York, NY) 316: 1153–1158 Available: http://www.ncbi.nlm.nih.gov/pubmed/17525?330 Accessed 1 November 2012.
|
[8] | Schermelleh L, Heintzmann R, Leonhardt H (2010) A guide to super-resolution fluorescence microscopy. The Journal of cell biology 190: 165–175 Available: http://jcb.rupress.org/content/190/2/165?.full Accessed 3 October 2012.
|
[9] | Lidke DS, Lidke KA (2012) Advances in high-resolution imaging–techniques for three-dimensional imaging of cellular structures. Journal of cell science 125: 2571–2580 Available: http://jcs.biologists.org/content/125/11?/2571.long Accessed 6 November 2012.
|
[10] | Saxton MJ, Jacobson K (1997) SINGLE-PARTICLE TRACKING:Applications to Membrane Dynamics. Annual Review of Biophysics and Biomolecular Structure 26: 373–399 Available: http://arjournals.annualreviews.org/doi/?abs/10.1146/annurev.biophys.26.1.373.
|
[11] | Ober RJ, Ram S, Ward ES (2004) Localization accuracy in single-molecule microscopy. Biophysical journal 86: 1185–1200 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=1303911&tool=pmcentrez?&rendertype=abstract.
|
[12] | Alcor D, Gouzer G, Triller A (2009) Single-particle tracking methods for the study of membrane receptors dynamics. Eur J Neurosci 30: 987–97 ST – Single–particle tracking methods for. Available: http://www.ncbi.nlm.nih.gov/pubmed/19735?284 Accessed 19 July 2011.
|
[13] | Ram S, Ward ES, Ober RJ (2006) Beyond Rayleigh's criterion: a resolution measure with application to single-molecule microscopy. Proceedings of the National Academy of Sciences of the United States of America 103: 4457–4462 Available: http://www.pnas.org/content/103/12/4457 Accessed 7 November 2012.
|
[14] | Low-Nam ST, Lidke KA, Cutler PJ, Roovers RC, Van Bergen en Henegouwen PMP, et al. (2011) ErbB1 dimerization is promoted by domain co-confinement and stabilized by ligand binding. Nat Struct Mol Biol 18: 1244–1249 Available: http://dx.doi.org/10.1038/nsmb.2135.
|
[15] | Hern JA, Baig AH, Mashanov GI, Birdsall B, Corrie JET, et al. (2010) Formation and dissociation of M1 muscarinic receptor dimers seen by total internal reflection fluorescence imaging of single molecules. Proceedings of the National Academy of Sciences of the United States of America 107: 2693–2698 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=2823895&tool=pmcentrez?&rendertype=abstract Accessed 12 November 2012.
|
[16] | You C, Wilmes S, Beutel O, L?chte S, Podoplelowa Y, et al. (2010) Self-controlled monofunctionalization of quantum dots for multiplexed protein tracking in live cells. Angewandte Chemie (International ed in English) 49: 4108–4112 Available: http://www.ncbi.nlm.nih.gov/pubmed/20432?494 Accessed 31 August 2012.
|
[17] | Andrews NL, Lidke K a, Pfeiffer JR, Burns AR, Wilson BS, et al. (2008) Actin restricts FceRI diffusion and facilitates antigen-induced receptor immobilization. Nature cell biology 10: 955–963 Available: http://dx.doi.org/10.1038/ncb1755 Accessed 17 August 2011.
|
[18] | Lidke DS, Lidke KA, Rieger B, Jovin TM, Arndt-Jovin DJ (2005) Reaching out for signals: filopodia sense EGF and respond by directed retrograde transport of activated receptors. The Journal of cell biology 170: 619–626 Available: http://jcb.rupress.org.libproxy.unm.edu/?content/170/4/619.long Accessed 6 March 2013.
|
[19] | Sinclair MB, Timlin JA, Haaland DM, Werner-washburne M (2004) Design, construction, characterization, and application of a hyperspectral microarray scanner. Applied Optics 43: 2079–2088.
|
[20] | Pawley JB (2006) Handbook of Biological Confocal Microscopy (Third Edition). 3rd ed. Pawley JB, editor Springer.
|
[21] | Andrews NL, Pfeiffer JR, Martinez a M, Haaland DM, Davis RW, et al. (2009) Small, Mobile FceRI Receptor Aggregates Are Signaling Competent. Immunity 31: 469–479 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=2828771&tool=pmcentrez?&rendertype=abstract Accessed 17 August 2011.
|
[22] | Haaland DM, Jones HDT, Van Benthem MH, Sinclair MB, Melgaard DK, et al. (2009) Hyperspectral Confocal Fluorescence Imaging: Exploring Alternative Multivariate Curve Resolution Approaches. Applied Spectroscopy 63: 271–279 Available: http://openurl.ingenta.com/content/xref??genre=article&issn=0003-7028&volume=63&i?ssue=3&spage=271.
|
[23] | Lerner JM (2006) Imaging spectrometer fundamentals for researchers in the biosciences–a tutorial. Cytometry Part A: the journal of the International Society for Analytical Cytology 69: 712–734 Available: http://www.ncbi.nlm.nih.gov/pubmed/16615?140 Accessed 6 February 2012.
|
[24] | Warren DW (1997) Compact prism spectrographs based on aplanatic principles. Optical Engineering 36: 1174–1182 Available: http://link.aip.org/link/OPEGAR/v36/i4/p?1174/s1&Agg=doi.
|
[25] | Cheezum MK, Walker WF, Guilford WH (2001) Quantitative comparison of algorithms for tracking single fluorescent particles. Biophysical journal 81: 2378–2388 Available: http://www.cell.com/biophysj/fulltext/S0?006-3495(01)75884-5 Accessed 12 July 2011.
|
[26] | Zhang B, Zerubia J, Olivo-Marin J-C (2007) Gaussian approximations of fluorescence microscope point-spread function models. Applied Optics 46: 1819 Available: http://www.opticsinfobase.org/abstract.c?fm?uri=ao-46-10-1819 Accessed 10 August 2012.
|
[27] | Smith CS, Joseph N, Rieger B, Lidke KA (2010) Fast, single-molecule localization that achieves theoretically minimum uncertainty. Nature methods 7: 373–375 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=2862147&tool=pmcentrez?&rendertype=abstract.
|
[28] | Huang F, Schwartz SL, Byars JM, Lidke KA (2011) Simultaneous multiple-emitter fitting for single molecule super-resolution imaging. Biomed Opt Express 2: 1377–1393.
|
[29] | Jaqaman K, Loerke D, Mettlen M, Kuwata H, Grinstein S, et al. (2008) Robust single-particle tracking in live-cell time-lapse sequences. Nat Meth 5: 695–702 Available: http://dx.doi.org/10.1038/nmeth.1237.
|
[30] | Wilson BS, Pfeiffer JR, Oliver JM (2000) Observing FceRI Signaling from the Inside of the Mast Cell Membrane. J Cell Biol 149: 1131–1142 ST – Observing FceRI Signaling from the. Available: http://jcb.rupress.org/cgi/content/abstr?act/149/5/1131.
|
[31] | Kusumi A, Nakada C, Ritchie K, Murase K, Suzuki K, et al. (2005) PARADIGM SHIFT OF THE PLASMA MEMBRANE CONCEPT FROM THE TWO-DIMENSIONAL CONTINUUM FLUID TO THE PARTITIONED FLUID: High-Speed Single-Molecule Tracking of Membrane Molecules. Annual Review of Biophysics and Biomolecular Structure 34: 351–378 Available: http://arjournals.annualreviews.org/doi/?abs/10.1146/annurev.biophys.34.040204.14?4637 Accessed 16 June 2011.
|
[32] | Manley S, Gillette JM, Patterson GH, Shroff H, Hess HF, et al. (2008) High-density mapping of single-molecule trajectories with photoactivated localization microscopy. Nature Methods 5: 2007–2009 doi:10.1038/NMETH.1176.
|
[33] | Balkay L, Márián T, Emri M, Krasznai Z, Trón L (1997) Flow cytometric determination of intracellular free potassium concentration. Cytometry 28: 42–49 Available: http://www.ncbi.nlm.nih.gov/pubmed/91367?54 Accessed 28 March 2013.
|
[34] | Chacon E, Reece JM, Nieminen AL, Zahrebelski G, Herman B, et al. (1994) Distribution of electrical potential, pH, free Ca2+, and volume inside cultured adult rabbit cardiac myocytes during chemical hypoxia: a multiparameter digitized confocal microscopic study. Biophysical journal 66: 942–952 Available: http://dx.doi.org/10.1016/S0006-3495(94)?80904-X Accessed 28 March 2013.
|
[35] | Williams DA, Fogarty KE, Tsien RY, Fay FS (1985) Calcium gradients in single smooth muscle cells revealed by the digital imaging microscope using Fura-2. Nature 318: 558–561 Available: http://dx.doi.org/10.1038/318558a0 Accessed 28 March 2013.
|
[36] | Parasassi T, De Stasio G, Ravagnan G, Rusch RM, Gratton E (1991) Quantitation of lipid phases in phospholipid vesicles by the generalized polarization of Laurdan fluorescence. Biophysical journal 60: 179–189 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=1260049&tool=pmcentrez?&rendertype=abstract Accessed 28 March 2013.
|
[37] | Shcherbakova DM, Hink MA, Joosen L, Gadella TWJ, Verkhusha V V (2012) An orange fluorescent protein with a large Stokes shift for single-excitation multicolor FCCS and FRET imaging. Journal of the American Chemical Society 134: 7913–7923 Available: http://pubs.acs.org.libproxy.unm.edu/doi?/full/10.1021/ja3018972 Accessed 28 March 2013.
|
[38] | Lee J, Lee S, Ragunathan K, Joo C, Ha T, et al. (2010) Single-molecule four-color FRET. Angewandte Chemie (International ed in English) 49: 9922–9925 Available: http://www.ncbi.nlm.nih.gov/pubmed/21104?966 Accessed 14 March 2013.
|
[39] | Milles S, Koehler C, Gambin Y, Deniz AA, Lemke EA (2012) Intramolecular three-colour single pair FRET of intrinsically disordered proteins with increased dynamic range. Molecular bioSystems 8: 2531–2534 Available: http://pubs.rsc.org/en/content/articleht?ml/2012/mb/c2mb25135c Accessed 28 March 2013.
|
[40] | Lee SF, Osborne M a (2009) Brightening, blinking, bluing and bleaching in the life of a quantum dot: friend or foe? Chemphyschem: a European journal of chemical physics and physical chemistry 10: 2174–2191 Available: http://www.ncbi.nlm.nih.gov/pubmed/19691?081 Accessed 21 July 2012.
|
[41] | Jones M, Nedeljkovic J, Ellingson RJ, Nozik AJ, Rumbles G (2003) Photoenhancement of Luminescence in Colloidal CdSe Quantum Dot Solutions. The Journal of Physical Chemistry B 107: 11346–11352 Available: http://pubs.acs.org/doi/abs/10.1021/jp03?5598m.
|
[42] | Hoyer P, Staudt T, Engelhardt J, Hell SW (2011) Quantum dot blueing and blinking enables fluorescence nanoscopy. Nano letters 11: 245–250 Available: http://www.ncbi.nlm.nih.gov/pubmed/21128?678 Accessed 24 March 2013.
|
[43] | Sinclair MB, Haaland DM, Timlin Ja, Jones HDT (2006) Hyperspectral confocal microscope. Applied optics 45: 6283–6291 Available: http://www.ncbi.nlm.nih.gov/pubmed/16892?134.
|
[44] | Huang Z-L, Zhu H, Long F, Ma H, Qin L, et al. (2011) Localization-based super-resolution microscopy with an sCMOS camera. Optics Express 19: 19156 Available: http://www.opticsinfobase.org/abstract.c?fm?uri=oe-19-20-19156 Accessed 25 September 2012.
|
[45] | Long F, Zeng S, Huang Z-L (2012) Localization-based super-resolution microscopy with an sCMOS camera Part II: Experimental methodology for comparing sCMOS with EMCCD cameras. Optics Express 20: 17741 Available: http://www.opticsinfobase.org/abstract.c?fm?uri=oe-20-16-17741 Accessed 21 July 2012.
|
[46] | Jones HDT, Haaland DM, Sinclair MB, Melgaard DK, Collins AM, et al. (2012) Preprocessing strategies to improve MCR analyses of hyperspectral images. Chemometrics and Intelligent Laboratory Systems null 1–10 Available: http://linkinghub.elsevier.com/retrieve/?pii/S0169743912000226 Accessed 21 August 2012.
|
[47] | Arnspang EC, Brewer JR, Lagerholm BC (n.d.) Multi-color Single Particle Tracking with Quantum Dots. PloS one
|
[48] | Elliott AD, Gao L, Ustione A, Bedard N, Kester R, et al. (2012) Real-time hyperspectral fluorescence imaging of pancreatic β-cell dynamics with the image mapping spectrometer (IMS). Journal of cell science Advanced O Available: http://jcs.biologists.org/cgi/content/ab?stract/jcs.108258v1 Accessed 21 August 2012.
|
[49] | Esposito A, Bader AN, Schlachter SC, Heuvel DJ Van Den, Schierle GSK, et al. (2011) Design and application of a confocal microscope for spectrally resolved anisotropy imaging. Optics Express 19: 1020–1027 doi:10.1002/cphc.201000833.16.
|
[50] | Yao J, Larson DR, Vishwasrao HD, Zipfel WR, Webb WW (2005) Blinking and nonradiant dark fraction of water-soluble quantum dots in aqueous solution. Proceedings of the National Academy of Sciences of the United States of America 102: 14284–14289 Available: http://www.pnas.org/content/102/40/14284?.full Accessed 4 August 2012.
|
[51] | Mittal R, Bruchez MP (2011) Biotin-4-fluorescein based fluorescence quenching assay for determination of biotin binding capacity of streptavidin conjugated quantum dots. Bioconjugate chemistry 22: 362–368 Available: http://www.pubmedcentral.nih.gov/article?render.fcgi?artid=3059817&tool=pmcentrez?&rendertype=abstract.
|
[52] | Chen Y, Vela J, Htoon H, Casson JL, Werder DJ, et al. (2008) “Giant” multishell CdSe nanocrystal quantum dots with suppressed blinking. J Am Chem Soc 130: 5026–5027 Available: http://www.ncbi.nlm.nih.gov/pubmed/18355?011.
|
[53] | Marchuk K, Guo Y, Sun W, Vela J, Fang N (2012) High-precision tracking with non-blinking quantum dots resolves nanoscale vertical displacement. Journal of the American Chemical Society 134: 6108–6111 Available: http://www.ncbi.nlm.nih.gov/pubmed/22458?433 Accessed 21 August 2012.
|
[54] | Ow H, Larson DR, Srivastava M, Baird BA, Webb WW, et al. (2005) Bright and stable core-shell fluorescent silica nanoparticles. Nano letters 5: 113–117 Available: http://dx.doi.org/10.1021/nl0482478 Accessed 13 August 2012.
|
[55] | Liu FT, Bohn JW, Ferry EL, Yamamoto H, Molinaro C a, et al. (1980) Monoclonal dinitrophenyl-specific murine IgE antibody: preparation, isolation, and characterization. Journal of immunology (Baltimore, Md: 1950) 124: 2728–2737 Available: http://www.ncbi.nlm.nih.gov/pubmed/73730?45.
|
[56] | Van Vliet LJ, Sudar D, Young IT (1998) Digital fluorescence imaging using cooled charge-coupled device array cameras. In: Celis JE, editor. Cell Biology. A laboratory handbook. Academic Press, Vol. III. pp. 109–120.
|