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OALib Journal期刊
ISSN: 2333-9721
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Novel method for phylogenetic tree construction based on correlation feature and fuzzy clustering
一种新的关联特征和模糊聚类的进化树构建方法*

Keywords: genome,phylogenetic analysis,correlation feature,phylogenetic tree,fuzzy clustering
基因组
,系统发育分析,关联特征,进化树,模糊聚类

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Abstract:

This paper proposed a new correlation feature TBC according to the difference of joint probability distribution in trinucleotide and base to show sequences' difference.Used the moving range transformation to TBC representation matrix and formed fuzzy similarity matrix by the exponent Chebyshev distance method.Constructed the phylogenetic tree using transitive closure of fuzzy clustering.The proposed method does not require multiple alignments and is simple in calculation.Phylogenetic trees of 48 hepatitis E...

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