Poly adenosine diphosphate-ribose polymerase-1 (PARP-1) is a multifunctional enzyme that is involved in two major cellular responses to oxidative and nitrosative (O/N) stress: detection and response to DNA damage via formation of protein-bound poly adenosine diphosphate-ribose (PAR), and formation of the soluble 2nd messenger monomeric adenosine diphosphate-ribose (mADPR). Previous studies have delineated specific roles for several of PARP-1′s structural domains in the context of its involvement in a DNA damage response. However, little is known about the relationship between the mechanisms through which PARP-1 participates in DNA damage detection/response and those involved in the generation of monomeric ADPR. To better understand the relationship between these events, we undertook a structure/function analysis of PARP-1 via reconstitution of PARP-1 deficient DT40 cells with PARP-1 variants deficient in catalysis, DNA binding, auto-PARylation, and PARP-1′s BRCT protein interaction domain. Analysis of responses of the respective reconstituted cells to a model O/N stressor indicated that PARP-1 catalytic activity, DNA binding, and auto-PARylation are required for PARP-dependent mADPR formation, but that BRCT-mediated interactions are dispensable. As the BRCT domain is required for PARP-dependent recruitment of XRCC1 to sites of DNA damage, these results suggest that DNA repair and monomeric ADPR 2nd messenger generation are parallel mechanisms through which PARP-1 modulates cellular responses to O/N stress.
References
[1]
Ame JC, Spenlehauer C, de Murcia G (2004) The PARP superfamily. Bioessays 26: 882–893.
[2]
Hochegger H, Dejsuphong D, Fukushima T, Morrison C, Sonoda E, et al. (2006) Parp-1 protects homologous recombination from interference by Ku and Ligase IV in vertebrate cells. EMBO J 25: 1305–1314.
[3]
Menissier de Murcia J, Ricoul M, Tartier L, Niedergang C, Huber A, et al. (2003) Functional interaction between PARP-1 and PARP-2 in chromosome stability and embryonic development in mouse. EMBO J 22: 2255–2263.
[4]
Shall S, de Murcia G (2000) Poly(ADP-ribose) polymerase-1: what have we learned from the deficient mouse model? Mutat Res 460: 1–15.
[5]
Buelow B, Song Y, Scharenberg AM (2008) The Poly(ADP-ribose) polymerase PARP-1 is required for oxidative stress-induced TRPM2 activation in lymphocytes. J Biol Chem 283: 24571–24583.
[6]
Fonfria E, Marshall IC, Benham CD, Boyfield I, Brown JD, et al. (2004) TRPM2 channel opening in response to oxidative stress is dependent on activation of poly(ADP-ribose) polymerase. Br J Pharmacol 143: 186–192.
[7]
Perraud AL, Takanishi CL, Shen B, Kang S, Smith MK, et al. (2005) Accumulation of free ADP-ribose from mitochondria mediates oxidative stress-induced gating of TRPM2 cation channels. J Biol Chem 280: 6138–6148.
[8]
Yang KT, Chang WL, Yang PC, Chien CL, Lai MS, et al. (2006) Activation of the transient receptor potential M2 channel and poly(ADP-ribose) polymerase is involved in oxidative stress-induced cardiomyocyte death. Cell Death Differ 13: 1815–1826.
[9]
Wacker DA, Ruhl DD, Balagamwala EH, Hope KM, Zhang T, et al. (2007) The DNA binding and catalytic domains of poly(ADP-ribose) polymerase 1 cooperate in the regulation of chromatin structure and transcription. Mol Cell Biol 27: 7475–7485.
[10]
D'Amours D, Desnoyers S, D'Silva I, Poirier GG (1999) Poly(ADP-ribosyl)ation reactions in the regulation of nuclear functions. Biochem J 342 (Pt 2): 249–268.
[11]
Audebert M, Salles B, Calsou P (2004) Involvement of poly(ADP-ribose) polymerase-1 and XRCC1/DNA ligase III in an alternative route for DNA double-strand breaks rejoining. J Biol Chem 279: 55117–55126.
[12]
Beernink PT, Hwang M, Ramirez M, Murphy MB, Doyle SA, et al. (2005) Specificity of protein interactions mediated by BRCT domains of the XRCC1 DNA repair protein. J Biol Chem 280: 30206–30213.
[13]
Dantzer F, Ame JC, Schreiber V, Nakamura J, Menissier-de Murcia J, et al. (2006) Poly(ADP-ribose) polymerase-1 activation during DNA damage and repair. Methods Enzymol 409: 493–510.
[14]
Heale JT, Ball AR Jr, Schmiesing JA, Kim JS, Kong X, et al. (2006) Condensin I interacts with the PARP-1-XRCC1 complex and functions in DNA single-strand break repair. Mol Cell 21: 837–848.
[15]
Keil C, Grobe T, Oei SL (2006) MNNG-induced cell death is controlled by interactions between PARP-1, poly(ADP-ribose) glycohydrolase, and XRCC1. J Biol Chem 281: 34394–34405.
[16]
Malanga M, Althaus FR (2005) The role of poly(ADP-ribose) in the DNA damage signaling network. Biochem Cell Biol 83: 354–364.
[17]
Audebert M, Salles B, Calsou P (2008) Effect of double-strand break DNA sequence on the PARP-1 NHEJ pathway. Biochem Biophys Res Commun 369: 982–988.
[18]
Saberi A, Hochegger H, Szuts D, Lan L, Yasui A, et al. (2007) RAD18 and poly(ADP-ribose) polymerase independently suppress the access of nonhomologous end joining to double-strand breaks and facilitate homologous recombination-mediated repair. Mol Cell Biol 27: 2562–2571.
[19]
Shrivastav M, De Haro LP, Nickoloff JA (2008) Regulation of DNA double-strand break repair pathway choice. Cell Res 18: 134–147.
[20]
Wang M, Wu W, Rosidi B, Zhang L, Wang H, et al. (2006) PARP-1 and Ku compete for repair of DNA double strand breaks by distinct NHEJ pathways. Nucleic Acids Res 34: 6170–6182.
[21]
Davidovic L, Vodenicharov M, Affar EB, Poirier GG (2001) Importance of poly(ADP-ribose) glycohydrolase in the control of poly(ADP-ribose) metabolism. Exp Cell Res 268: 7–13.
Gao H, Coyle DL, Meyer-Ficca ML, Meyer RG, Jacobson EL, et al. (2007) Altered poly(ADP-ribose) metabolism impairs cellular responses to genotoxic stress in a hypomorphic mutant of poly(ADP-ribose) glycohydrolase. Exp Cell Res 313: 984–996.
[24]
Koh DW, Lawler AM, Poitras MF, Sasaki M, Wattler S, et al. (2004) Failure to degrade poly(ADP-ribose) causes increased sensitivity to cytotoxicity and early embryonic lethality. Proc Natl Acad Sci U S A 101: 17699–17704.
[25]
Pollak N, Dolle C, Ziegler M (2007) The power to reduce: pyridine nucleotides–small molecules with a multitude of functions. Biochem J 402: 205–218.
[26]
Jacobson EL, Cervantes-Laurean D, Jacobson MK (1994) Glycation of proteins by ADP-ribose. Mol Cell Biochem 138: 207–212.
[27]
Jacobson MK, Jacobson EL (1999) Discovering new ADP-ribose polymer cycles: protecting the genome and more. Trends Biochem Sci 24: 415–417.
[28]
Hillyard D, Rechsteiner M, Manlapaz-Ramos P, Imperial JS, Cruz LJ, et al. (1981) The pyridine nucleotide cycle. Studies in Escherichia coli and the human cell line D98/AH2. J Biol Chem 256: 8491–8497.
[29]
Hillyard D, Rechsteiner MC, Olivera BM (1973) Pyridine nucleotide metabolism in mammalian cells in culture. J Cell Physiol 82: 165–179.
[30]
Rechsteiner M, Hillyard D, Olivera BM (1976) Turnover at nicotinamide adenine dinucleotide in cultures of human cells. J Cell Physiol 88: 207–217.
[31]
Song Y, Buelow B, Perraud AL, Scharenberg AM (2008) Development and validation of a cell-based high-throughput screening assay for TRPM2 channel modulators. J Biomol Screen 13: 54–61.
[32]
Rolli V, O'Farrell M, Menissier-de Murcia J, de Murcia G (1997) Random mutagenesis of the poly(ADP-ribose) polymerase catalytic domain reveals amino acids involved in polymer branching. Biochemistry 36: 12147–12154.
[33]
Altmeyer M, Messner S, Hassa PO, Fey M, Hottiger MO (2009) Molecular mechanism of poly(ADP-ribosyl)ation by PARP1 and identification of lysine residues as ADP-ribose acceptor sites. Nucleic Acids Res.
[34]
Molinete M, Vermeulen W, Burkle A, Menissier-de Murcia J, Kupper JH, et al. (1993) Overproduction of the poly(ADP-ribose) polymerase DNA-binding domain blocks alkylation-induced DNA repair synthesis in mammalian cells. EMBO J 12: 2109–2117.
[35]
Kupper JH, Muller M, Jacobson MK, Tatsumi-Miyajima J, Coyle DL, et al. (1995) trans-dominant inhibition of poly(ADP-ribosyl)ation sensitizes cells against gamma-irradiation and N-methyl-N'-nitro-N-nitrosoguanidine but does not limit DNA replication of a polyomavirus replicon. Mol Cell Biol 15: 3154–3163.
[36]
Mortusewicz O, Ame JC, Schreiber V, Leonhardt H (2007) Feedback-regulated poly(ADP-ribosyl)ation by PARP-1 is required for rapid response to DNA damage in living cells. Nucleic Acids Res 35: 7665–7675.
[37]
Ikejima M, Noguchi S, Yamashita R, Ogura T, Sugimura T, et al. (1990) The zinc fingers of human poly(ADP-ribose) polymerase are differentially required for the recognition of DNA breaks and nicks and the consequent enzyme activation. Other structures recognize intact DNA. J Biol Chem 265: 21907–21913.
[38]
Pleschke JM, Kleczkowska HE, Strohm M, Althaus FR (2000) Poly(ADP-ribose) binds to specific domains in DNA damage checkpoint proteins. J Biol Chem 275: 40974–40980.
[39]
Uchida M, Hanai S, Uematsu N, Sawamoto K, Okano H, et al. (2001) Genetic and functional analysis of PARP, a DNA strand break-binding enzyme. Mutat Res 477: 89–96.
[40]
Uchida K, Uchida M, Hanai S, Ozawa Y, Ami Y, et al. (1993) Isolation of the poly(ADP-ribose) polymerase-encoding cDNA from Xenopus laevis: phylogenetic conservation of the functional domains. Gene 137: 293–297.
[41]
Pion E, Ullmann GM, Ame JC, Gerard D, de Murcia G, et al. (2005) DNA-induced dimerization of poly(ADP-ribose) polymerase-1 triggers its activation. Biochemistry 44: 14670–14681.
[42]
Peterson AR, Bertram JS, Heidelberger C (1974) Cell cycle dependency of DNA damage and repair in transformable mouse fibroblasts treated with N-methyl-N'–nitro-N-nitrosoguanidine. Cancer Res 34: 1600–1607.
[43]
Peterson AR, Bertram JS, Heidelberger C (1974) DNA damage and its repair in transformable mouse fibroblasts treated with N-methyl-N'-nitro-N-nitrosoguanidine. Cancer Res 34: 1592–1599.
[44]
Cherney BW, McBride OW, Chen DF, Alkhatib H, Bhatia K, et al. (1987) cDNA sequence, protein structure, and chromosomal location of the human gene for poly(ADP-ribose) polymerase. Proc Natl Acad Sci U S A 84: 8370–8374.
[45]
Duriez PJ, Desnoyers S, Hoflack JC, Shah GM, Morelle B, et al. (1997) Characterization of anti-peptide antibodies directed towards the automodification domain and apoptotic fragment of poly (ADP-ribose) polymerase. Biochim Biophys Acta 1334: 65–72.
[46]
Kawaichi M, Ueda K, Hayaishi O (1981) Multiple autopoly(ADP-ribosyl)ation of rat liver poly(ADP-ribose) synthetase. Mode of modification and properties of automodified synthetase. J Biol Chem 256: 9483–9489.
[47]
Uchida K, Morita T, Sato T, Ogura T, Yamashita R, et al. (1987) Nucleotide sequence of a full-length cDNA for human fibroblast poly(ADP-ribose) polymerase. Biochem Biophys Res Commun 148: 617–622.
[48]
Dawson TM, Zhang J, Dawson VL, Snyder SH (1994) Nitric oxide: cellular regulation and neuronal injury. Prog Brain Res 103: 365–369.