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Silence

ISSN Print: 1758-907X

ISSN Online:

Website: http://www.silencejournal.com

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Inhibition of microRNA function by antimiR oligonucleotides

Jan Stenvang, Andreas Petri, Morten Lindow, Susanna Obad, Sakari Kauppinen

Development of a luciferase-based reporter of transcriptional gene silencing that enables bidirectional mutant screening in Arabidopsis thaliana

So Youn Won, Shengben Li, Binglian Zheng, Yuanyuan Zhao, Dongming Li, Xin Zhao, Huilan Yi, Lei Gao, Thanh T Dinh, Xuemei Chen

Reducing ligation bias of small RNAs in libraries for next generation sequencing

Karim Sorefan, Helio Pais, Adam E Hall, Ana Kozomara, Sam Griffiths-Jones, Vincent Moulton, Tamas Dalmay

Application of RNA silencing to plant disease resistance

Cheng-Guo Duan, Chun-Han Wang, Hui-Shan Guo

RNA: methods and protocols — a new series

Phillip Zamore

Noncoding RNA localisation mechanisms in chromatin regulation

Aditi Kanhere, Richard G Jenner

Target gene expression levels and competition between transfected and endogenous microRNAs are strong confounding factors in microRNA high-throughput experiments

Takaya Saito, P？l S？trom

Strand-specific libraries for high throughput RNA sequencing (RNA-Seq) prepared without poly(A) selection

Zhang Zhao,Theurkauf William E,Weng Zhiping,Zamore Phillip D

MicroRNAs from the same precursor have different targeting properties

Marco Antonio,MacPherson Jamie I,Ronshaugen Matthew,Griffiths-Jones Sam

Effect of small interfering RNA 3'-end overhangs on chemosensitivity to thymidylate synthase inhibitors

John C Schmitz, Edward Chu

Noncoding RNAs and cancer

Ohad Yogev, Dimitris Lagos

Experimental design, preprocessing, normalization and differential expression analysis of small RNA sequencing experiments

Kevin P McCormick, Matthew R Willmann, Blake C Meyers

A 5′-uridine amplifies miRNA/miRNA* asymmetry in Drosophila by promoting RNA-induced silencing complex formation

Hervé Seitz, Jogender S Tushir, Phillip D Zamore

Posttranslational modification of Argonautes and their role in small RNA-mediated gene regulation

Michael Johnston, Gyorgy Hutvagner

Off-target effects dominate a large-scale RNAi screen for modulators of the TGF-β pathway and reveal microRNA regulation of TGFBR2

Nikolaus Schultz, Dina R Marenstein, Dino A De Angelis, Wei-Qing Wang, Sven Nelander, Anders Jacobsen, Debora S Marks, Joan Massagué, Chris Sander

Helicobacter pylori interferes with an embryonic stem cell micro RNA cluster to block cell cycle progression

Cédric Belair, Jessica Baud, Sandrine Chabas, Cynthia M Sharma, J？rg Vogel, Cathy Staedel, Fabien Darfeuille

The dose can make the poison: lessons learned from adverse in vivo toxicities caused by RNAi overexpression

Dirk Grimm

Welcome to Silence

David C Baulcombe, Phillip D Zamore

A structural-based statistical approach suggests a cooperative activity of PUM1 and miR-410 in human 3'-untranslated regions

Limor Leibovich, Yael Mandel-Gutfreund, Zohar Yakhini

Naturally occurring variations in sequence length creates microRNA isoforms that differ in argonaute effector complex specificity

H Alexander Ebhardt, Amber Fedynak, Richard P Fahlman

How do miRNAs mediate translational repression?

Shuo Gu, Mark A Kay

Specificity and functionality of microRNA inhibitors

Barbara Robertson, Andrew B Dalby, Jon Karpilow, Anastasia Khvorova, Devin Leake, Annaleen Vermeulen

Solution structure of the Drosha double-stranded RNA-binding domain

Geoffrey A Mueller, Matthew T Miller, Eugene F DeRose, Mahua Ghosh, Robert E London, Traci Hall

How to slice: snapshots of Argonaute in action

James S Parker

Aptamer-targeted cell-specific RNA interference

Jiehua Zhou, John J Rossi

MicroR159 regulation of most conserved targets in Arabidopsis has negligible phenotypic effects

Robert S Allen, Junyan Li, Maria M Alonso-Peral, Rosemary G White, Frank Gubler, Anthony A Millar

A status report on RNAi therapeutics

Akshay K Vaishnaw, Jared Gollob, Christina Gamba-Vitalo, Renta Hutabarat, Dinah Sah, Rachel Meyers, Tony de Fougerolles, John Maraganore

In vivo quantification of formulated and chemically modified small interfering RNA by heating-in-Triton quantitative reverse transcription polymerase chain reaction (HIT qRT-PCR)

Yosef Landesman, Nenad Svrzikapa, Armand Cognetta, Xuemei Zhang, Brian R Bettencourt, Satya Kuchimanchi, Keri Dufault, Sarfraz Shaikh, Maple Gioia, Akin Akinc, Renta Hutabarat, Rachel Meyers

An endogenous F-box protein regulates ARGONAUTE1 in Arabidopsis thaliana

K Earley, MR Smith, R Weber, BD Gregory, RS Poethig

Expression patterns of intronic microRNAs in Caenorhabditis elegans

Meltem Isik, Hendrik C Korswagen, Eugene Berezikov

Riding in silence: a little snowboarding, a lot of small RNAs

Stefan L Ameres, Ryuya Fukunaga

Inhibiting miRNA in Caenorhabditis elegans using a potent and selective antisense reagent

Genhua Zheng, Victor Ambros, Wen-hong Li

microRNA as a new immune-regulatory agent in breast milk

Nobuyoshi Kosaka, Hirohisa Izumi, Kazunori Sekine, Takahiro Ochiya

Development of the human cancer microRNA network

Sanghamitra Bandyopadhyay, Ramkrishna Mitra, Ujjwal Maulik, Michael Q Zhang

RNA silencing in plants: Flash report!

Rebecca A Mosher, Mathew G Lewsey, Padubidri V Shivaprasad

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