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Cancer Informatics

ISSN Print: 1176-9351

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Website: http://www.la-press.com/cancer-informatics-journal-j10

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Basic Equations and Computing Procedures for Frailty Modeling of Carcinogenesis: Application to Pancreatic Cancer Data

Tengiz Mdzinarishvili,Simon Sherman

An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study

Li-Xuan Qin,Tom Tuschl,Samuel Singer

Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma

Michael X. Gleason,Tengiz Mdzinarishvili,Chandrakanth Are,Aaron Sasson

Classification of Tumor Samples from Expression Data Using Decision Trunks

Benjamin Ulfenborg,Karin Klinga-Levan,Bj？rn Olsson

In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers

Yuriy Gusev,Rebecca B. Riggins,Krithika Bhuvaneshwar,Robinder Gauba

Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management

P.T. Krishna Kumar,P.T. Vinod,Vir V. Phoha,S.S. Iyengar

An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer

Chindo Hicks,Ranjit Kumar,Antonio Pannuti,Kandis Backus

Metagenes Associated with Survival in Non-Small Cell Lung Cancer

Egon Urgard, T nu Vooder, Urmo V sa, Kristjan V lk, Mingming Liu, Cheng Luo, Fabian Hoti, Retlav Roosipuu, Tarmo Annilo, Jukka Laine, Christopher M. Frenz, Liqing Zhang and Andres Metspalu

Prediction of Breast Cancer Metastasis by Gene Expression Profiles: A Comparison of Metagenes and Single Genes

Mark Burton, Mads Thomassen, Qihua Tan and Torben A. Kruse

Reproducibility of SELDI Spectra Across Time and Laboratories

Lixia Diao, Charlotte H. Clarke, Kevin R. Coombes, Stanley R. Hamilton, Jack Roth, Li Mao, Bogdan Czerniak, Keith A. Baggerly, Jeffrey S. Morris, Eric T. Fung and Robert C. Bast Jr

Surface Adjustment of Reverse Phase Protein Arrays using Positive Control Spots

E. Shannon Neeley, Keith A. Baggerly and Steven M. Kornblau

Design of an Expert System for Mitigating Trace Element Toxicity in Cancer Risk Management

P.T. Krishna Kumar, P.T. Vinod, Vir V. Phoha, S.S. Iyengar and Puneeth Iyengar

Mapping the Future—Merging the Old with the New Across Disciplines

J.T. Efird

Improved Statistical Analysis for Array CGH-Based DNA Copy Number Aberrations

Hongmei Jiang, Zhong-Zheng Zhu, Yue Yu, Simon Lin and Lifang Hou

In silico Analysis of Combinatorial microRNA Activity Reveals Target Genes and Pathways Associated with Breast Cancer Metastasis

Alan A. Dombkowski, Zakia Sultana, Douglas B. Craig and Hasan Jamil

A Jackknife and Voting Classifier Approach to Feature Selection and Classification

Sandra L. Taylor and Kyoungmi Kim

Significance Analysis of Microarrays (SAM) Offers Clues to Differences Between the Genomes of Adult Philadelphia Positive ALL and the Lymphoid Blast Transformation of CML

Colin Grace and Elisabeth P. Nacheva

Major Functional Transcriptome of an Inferred Center Regulator of an ER(-) Breast Cancer Model System

Li-Yu Daisy Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Yi-Shing Lin, Shiu-Feng Huang, Chiung-Nien Chen, King-Jen Chang, Fon-Jou Hsieh

Gene Selection using a High-Dimensional Regression Model with Microarrays in Cancer Prognostic Studies

Shuhei Kaneko, Akihiro Hirakawa and Chikuma Hamada

Bioinformatic Prediction of Ultraviolet Light Mutagenesis Sensitivity of Human Genes and a Method for Genetically Engineering UVB Resistance

Kevin A. Lease and Chris Papageorgio

Cellular Imaging Using Equivalent Cross-Relaxation Rate Technique in Rabbit VX-2 Tumor Model

Hideyuki Nishiofuku, Shigeru Matsushima, Osamu Taguchi, Yoshitaka Inaba, Hidekazu Yamaura, Yozo Sato, Toshihiro Tanaka and Kimihiko Kichikawa

Model-Integrated Estimation of Normal Tissue Contamination for Cancer SNP Allelic Copy Number Data

Susann Stjernqvist, Tobias Rydén and Chris D. Greenman

Evaluating Translocation Gene Fusions by SNP Array Data

Hong Liu, Asher Zilberstein, Pascal Pannier, Frederic Fleche, Christopher Arendt, Christoph Lengauer and Chang S. Hahn

An Empirical Evaluation of Normalization Methods for MicroRNA Arrays in a Liposarcoma Study

Li-Xuan Qin, Tom Tuschl and Samuel Singer

Associating GWAS Information with the Notch Signaling Pathway Using Transcription Profiling

Chindo Hicks, Antonio Pannuti and Lucio Miele

Mouse 11β-Hydroxysteroid Dehydrogenase Type 2 for Human Application: Homology Modeling, Structural Analysis and Ligand-Receptor Interaction

Hideaki Yamaguchi, Tatsuo Akitaya, Yumi Kidachi, Katsuyoshi Kamiie, Toshiro Noshita, Hironori Umetsu and Kazuo Ryoyama

An Integrative Genomics Approach to Biomarker Discovery in Breast Cancer

Chindo Hicks, Rozana Asfour, Antonio Pannuti and Lucio Miele

Comparison of Two Output-Coding Strategies for Multi-Class Tumor Classification Using Gene Expression Data and Latent Variable Model as Binary Classifier

Sandeep J. Joseph, Kelly R. Robbins, Wensheng Zhang and Romdhane Rekaya

GENT: Gene Expression Database of Normal and Tumor Tissues

Gwangsik Shin, Tae-Wook Kang, Sungjin Yang, Su-Jin Baek, Yong-Su Jeong and Seon-Young Kim

Haploinsufficiency of Tumor Suppressor Genes is Driven by the Cumulative Effect of microRNAs, microRNA Binding Site Polymorphisms and microRNA Polymorphisms: An In silico Approach

Mayakannan Manikandan, Ganesh Raksha and Arasambattu Kannan Munirajan

In Silico Prediction for Regulation of Transcription Factors onTheir Shared Target Genes Indicates Relevant Clinical Implications in a Breast Cancer Population

Li-Yu D Liu, Li-Yun Chang, Wen-Hung Kuo, Hsiao-Lin Hwa, Ming-Kwang Shyu, King-Jen Chang and Fon-Jou Hsieh

Linear Discriminant Functions in Connection with the micro-RNA Diagnosis of Colon Cancer

Jason B. Nikas and Walter C. Low

Aberrant Signaling Pathways in Squamous Cell Lung Carcinoma

Ivy Shi, Nooshin Hashemi Sadraei, Zhong-Hui Duan, and Ting Shi

In Silico Discovery of Mitosis Regulation Networks Associated with Early Distant Metastases in Estrogen Receptor Positive Breast Cancers

Yuriy Gusev, Rebecca B. Riggins, Krithika Bhuvaneshwar, Robinder Gauba, Laura Sheahan, Robert Clarke and Subha Madhavan

New Short Term Prediction Method for Chemical Carcinogenicity by Hepatic Transcript Profiling Following 28-Day Toxicity Tests in Rats

Hiroshi Matsumoto, Yoshikuni Yakabe, Fumiyo Saito, Koichi Saito, Kayo Sumida, Masaru Sekijima, Koji Nakayama, Hideki Miyaura, Masanori Otsuka and Tomoyuki Shirai

A Robust Gene Selection Method for Microarray-based Cancer Classification

Xiaosheng Wang and Osamu Gotoh

Integrated Analysis Reveals hsa-miR-142 as a Representative of a Lymphocyte-Specific Gene Expression and Methylation Signature

Bill Andreopoulos and Dimitris Anastassiou

On Differential Gene Expression Using RNA-Seq Data

Juhee Lee, Yuan Ji, Shoudan Liang, Guoshuai Cai and Peter Müller

Dual KS: Defining Gene Sets with Tissue Set Enrichment Analysis

Yarong Yang, Eric J. Kort, Nader Ebrahimi, Zhongfa Zhang and Bin T. Teh

PCCR: Pancreatic Cancer Collaborative Registry

Simon Sherman, Oleg Shats, Marsha A. Ketcham, Michelle A. Anderson, David C. Whitcomb, Henry T. Lynch, Paola Ghiorzo, Wendy S. Rubinstein, Aaron R. Sasson, William E. Grizzle, Gleb Haynatzki, Jianmin Feng, Alexander Sherman, Leo Kinarsky and Randall E. Brand

Newton, Laplace, and The Epistemology of Systems Biology

Michael L. Bittner and Edward R. Dougherty

The Power of the Web in Cancer Drug Discovery and Clinical Trial Design: Research without a Laboratory?

Christine Galustian and Angus G. Dalgleish

An Integrative Genomics Approach for Associating GWAS Information with Triple-Negative Breast Cancer

Chindo Hicks, Ranjit Kumar, Antonio Pannuti, Kandis Backus, Alexandra Brown, Jesus Monico and Lucio Miele

A Comparison of Methods for Data-Driven Cancer Outlier Discovery, and An Application Scheme to Semisupervised Predictive Biomarker Discovery

Seppo Karrila, Julian Hock Ean Lee and Greg Tucker-Kellogg

Bimodal Gene Expression and Biomarker Discovery

Adam Ertel

Mathematical Prognostic Biomarker Models for Treatment Response and Survival in Epithelial Ovarian Cancer

Jason B. Nikas, Kristin L.M. Boylan, Amy P.N. Skubitz, and Walter C. Low

Skin Cancer Recognition by Using a Neuro-Fuzzy System

Bareqa Salah, Mohammad Alshraideh, Rasha Beidas and Ferial Hayajneh

Prognostic Estimator of Survival for Patients with Localized and Extended Pancreatic Ductal Adenocarcinoma

Michael X. Gleason, Tengiz Mdzinarishvili, Chandrakanth Are, Aaron Sasson, Alexander Sherman, Oleg Shats, and Simon Sherman

Expression a La Bimode

James C. Willey

Self-Calibrated Warping for Mass Spectra Alignment

Q. Peter He, Jin Wang, James A. Mobley, Joshua Richman and William E. Grizzle

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