%0 Journal Article %T Estrogen receptor variants in ER-positive basal-type breast cancers responding to therapy like ER-negative breast cancers %J - %D 2019 %R https://doi.org/10.1038/s41523-019-0109-7 %X Immunohistochemically ER-positive HER2-negative (ER+HER2£¿) breast cancers are classified clinically as Luminal-type. We showed previously that molecular subtyping using the 80-gene signature (80-GS) reclassified a subset of ER+HER2£¿ tumors to molecular Basal-type. We report here that molecular reclassification is associated with expression of dominant-negative ER variants and evaluate response to neoadjuvant therapy and outcome in the prospective neoadjuvant NBRST study (NCT01479101). The 80-GS reclassified 91 of 694 (13.1%) immunohistochemically Luminal-type tumors to molecular Basal-type. Importantly, all 91 discordant tumors were classified as high-risk, whereas only 66.9% of ER+/Luminal-type tumors were classified at high-risk for disease recurrence (i.e., Luminal B) (P£¿<£¿0.001). ER variant mRNA (ER£¿3, ER£¿7, and ER¦Á-36) analysis performed on 84 ER+/Basal tumors and 48 ER+/Luminal B control tumors revealed that total ER mRNA was significantly lower in ER+/Basal tumors. The relative expression of ER£¿7/total ER was significantly higher in ER+/Basal tumors compared to ER+/Luminal B tumors (P£¿<£¿0.001). ER+/Basal patients had similar pathological complete response (pCR) rates following neoadjuvant chemotherapy as ER£¿/Basal patients (34.3 vs. 37.6%), and much higher than ER+/Luminal A or B patients (2.3 and 5.8%, respectively). Furthermore, 3-year distant metastasis-free interval (DMFI) for ER+/Basal patients was 65.8%, significantly lower than 96.3 and 88.9% for ER+/Luminal A and B patients, respectively, (log-rank P£¿<£¿0.001). Significantly lower total ER mRNA and increased relative ER£¿7 dominant-negative variant expression provides a rationale why ER+/Basal breast cancers are molecularly ER-negative. Identification of this substantial subset of patients is clinically relevant because of the higher pCR rate to neoadjuvant chemotherapy and correlation with clinical outcome %U https://www.nature.com/articles/s41523-019-0109-7