%0 Journal Article %T Application of a Clinical Whole-Transcriptome Assay for Staging and Prognosis of Prostate Cancer Diagnosed in Needle Core Biopsy Specimens %A Beatrice S. Knudsen %A Elai Davicioni %A Heesun Shin %A Hyung L. Kim %A Imelda Tenggara %A Jeffry P. Simko %A June M. Chan %A Karen Chadwich %A Lucia L.C. Lam %A Matthew R. Cooperberg %A Mohammed Alshalalfa %A Neil Fleshner %A Nicholas Erho %A Peter R. Carroll %A Theo Van Der Kwast %J The Journal of Molecular Diagnostics %D 2016 %R 10.1016/j.jmoldx.2015.12.006 %X Molecular and genomic analysis of microscopic quantities of tumor from formalin-fixed, paraffin-embedded biopsy specimens has many unique challenges. Herein, we evaluated the feasibility of obtaining transcriptome-wide RNA expression to measure prognostic classifiers in diagnostic prostate needle core biopsy specimens. One-hundred fifty-eight samples from diagnostic needle core biopsy specimens (BX) and radical prostatectomies (RPs) were collected from 33 patients at three hospitals; each patient provided up to six tumor and benign samples. %U https://jmd.amjpathol.org/article/S1525-1578(16)00051-9/fulltext