%0 Journal Article
%T StrainSeeker: fast identification of bacterial strains from raw sequencing reads using user-provided guide trees
%A Lauris Kaplinski
%A Maarja Lepamets
%A Maido Remm
%A Mihkel Vaher
%A M£¿rt M£¿ls
%A M£¿rt Roosaare
%A Paul Naaber
%A Reidar Andreson
%A Siiri K£¿ljalg
%A Triinu K£¿ressaar
%J Archive of "PeerJ".
%D 2017
%R 10.7717/peerj.3353
%X Fast, accurate and high-throughput identification of bacterial isolates is in great demand. The present work was conducted to investigate the possibility of identifying isolates from unassembled next-generation sequencing reads using custom-made guide trees
%K k-mer
%K Clade
%K Strain identification
%K Species identification
%K Diagnostics
%U https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5438578/