%0 Journal Article %T The Data Reduction Pipeline for the Apache Point Observatory Galactic Evolution Experiment %A David L. Nidever %A Jon A. Holtzman %A Carlos Allende Prieto %A Stephane Beland %A Chad Bender %A Dmitry Bizyaev %A Adam Burton %A Rohit Desphande %A Scott W. Fleming %A Ana Elia Garcia Perez %A Fred R. Hearty %A Steven R. Majewski %A Szabolcs Meszaros %A Demitri Muna %A Duy Nguyen %A Ricardo P. Schiavon %A Matthew Shetrone %A Michael F. Skrutskie %A Jennifer S. Sobeck %A John C. Wilson %J Physics %D 2015 %I arXiv %R 10.1088/0004-6256/150/6/173 %X The Apache Point Observatory Galactic Evolution Experiment (APOGEE), part of the Sloan Digital Sky Survey III, explores the stellar populations of the Milky Way using the Sloan 2.5-m telescope linked to a high resolution (R~22,500), near-infrared (1.51-1.70 microns) spectrograph with 300 optical fibers. For over 150,000 predominantly red giant branch stars that APOGEE targeted across the Galactic bulge, disks and halo, the collected high S/N (>100 per half-resolution element) spectra provide accurate (~0.1 km/s) radial velocities, stellar atmospheric parameters, and precise (~0.1 dex) chemical abundances for about 15 chemical species. Here we describe the basic APOGEE data reduction software that reduces multiple 3D raw data cubes into calibrated, well-sampled, combined 1D spectra, as implemented for the SDSS-III/APOGEE data releases (DR10, DR11 and DR12). The processing of the near-IR spectral data of APOGEE presents some challenges for reduction, including automated sky subtraction and telluric correction over a 3 degree diameter field and the combination of spectrally dithered spectra. We also discuss areas for future improvement. %U http://arxiv.org/abs/1501.03742v2