%0 Journal Article %T Cloning and expression analysis of two distinct HIF-alpha isoforms 每 gcHIF-1alpha and gcHIF-4alpha 每 from the hypoxia-tolerant grass carp, Ctenopharyngodon idellus %A Sheran HW Law %A Rudolf SS Wu %A Patrick KS Ng %A Richard MK Yu %A Richard YC Kong %J BMC Molecular Biology %D 2006 %I BioMed Central %R 10.1186/1471-2199-7-15 %X We have cloned and characterized two distinct HIF-alpha cDNAs 每 gcHIF-1alpha and gcHIF-4alpha 每 from the hypoxia-tolerant grass carp. The deduced gcHIF-1alpha protein is highly similar to the HIF-1alphas (57每68%) from various vertebrate species, while gcHIF-4alpha is a novel isoform, and shows an equivalent degree of amino acid identity (41每47%) to the HIF-1alpha, HIF-2alpha and HIF-3alpha proteins so far described. Parsimony analysis indicated that gcHIF-4alpha is most closely related to the HIF-3alpha proteins. Northern blot analysis showed that mRNA levels of gcHIF-1alpha and gcHIF-4alpha differ substantially under normoxic and hypoxic conditions, while Western blot studies demonstrated that the endogenous protein levels for both gcHIF-1alpha and gcHIF-4alpha are similarly responsive to hypoxia. Our findings suggest that both gcHIF-1alpha and gcHIF-4alpha are differentially regulated at the transcriptional and translational levels. HRE-luciferase reporter assays show that both proteins function as transcription activators and play distinct roles in modulating the hypoxic response in grass carp.There are at least two distinct HIF-alpha isoforms 每 gcHIF-1alpha and gcHIF-4alpha 每 in the hypoxia-tolerant grass carp, which are differentially expressed and regulated in different fish organs in response to hypoxic stress. Overall, the results suggest that unique molecular mechanisms operate through these two HIF-alpha isoforms, which underpin the hypoxic response in the hypoxia-tolerant grass carp.Hypoxia-inducible factors (HIFs) are highly conserved proteins, found in a wide range of animals, that mediate a variety of adaptive cellular and systemic responses to hypoxia by upregulating the expression of more than 60 different genes [1] to assist animals in their adaptation and survival. HIF is a heterodimeric DNA-binding complex consisting of 汐 and 汕 (also known as aryl hydrocarbon receptor nuclear translocator, or ARNT) subunits which are members of the bHLH-PAS (PER-A %U http://www.biomedcentral.com/1471-2199/7/15