%0 Journal Article %T Evaluating the control of HPAIV H5N1 in Vietnam: virus transmission within infected flocks reported before and after vaccination %A Ricardo Soares Magalh£żes %A Dirk U Pfeiffer %A Joachim Otte %J BMC Veterinary Research %D 2010 %I BioMed Central %R 10.1186/1746-6148-6-31 %X Our results show that infected premises (IPs) in the initial (exponential) phases of outbreak periods have the highest R0 estimates. The IPs reported during the outbreak period when depopulation-based disease control was implemented had higher R0 estimates than IPs reported during the outbreak period when vaccination-based disease control was used. In the latter period, in some flocks of a defined size and species composition, within-flock transmission estimates were not significantly below the threshold for transmission (R0 < 1).Our results indicate that the current control policy based on depopulation plus vaccination has protected the majority of poultry flocks against infection. However, in some flocks the determinants associated with suboptimal protection need to be further investigated as these may explain the current pattern of infection in animal and human populations.The incidence of HPAIV H5N1 cases in poultry and humans has been particularly high in south-east Asian countries and Egypt [1]. The current pattern of poultry outbreaks in these regions suggests the presence of a reservoir of residual infection [2,3].From late 2003 to 2006 in Vietnam, the incidence of outbreaks in poultry was particularly high in regions of the Red and Mekong river deltas. Outbreaks were associated with increased movement of poultry around the annual traditional festivities held just before and during February (the "Tet" holiday) [4]. However, since 2006, this pattern has discontinued. Across the country, HPAIV H5N1 infection primarily affected small-scale commercial premises rearing chicken or ducks in subsistence flocks [5,6]. These market-oriented flocks account for about two-thirds of poultry production and half of direct marketing in Vietnam [7,8]. In addition to poultry cases, Vietnam has the second highest number of HPAIV H5N1-related human fatalities in the world [9]. Between 2003 and May 2010, there were 119 confirmed HPAIV H5N1 cases and 59 deaths in humans, represent %U http://www.biomedcentral.com/1746-6148/6/31