%0 Journal Article %T HLA Alleles Associated with Delayed Progression to AIDS Contribute Strongly to the Initial CD8+ T Cell Response against HIV-1 %A Marcus Altfeld %A Elizabeth T Kalife %A Ying Qi %A Hendrik Streeck %A Mathias Lichterfeld %A Mary N Johnston %A Nicole Burgett %A Martha E Swartz %A Amy Yang %A Galit Alter %A Xu G Yu %A Angela Meier %A Juergen K Rockstroh %A Todd M Allen %A Heiko Jessen %A Eric S Rosenberg %A Mary Carrington %A Bruce D Walker %J PLOS Medicine %D 2006 %I Public Library of Science (PLoS) %R 10.1371/journal.pmed.0030403 %X Background Very little is known about the immunodominance patterns of HIV-1-specific T cell responses during primary HIV-1 infection and the reasons for human lymphocyte antigen (HLA) modulation of disease progression. Methods and Findings In a cohort of 104 individuals with primary HIV-1 infection, we demonstrate that a subset of CD8+ T cell epitopes within HIV-1 are consistently targeted early after infection, while other epitopes subsequently targeted through the same HLA class I alleles are rarely recognized. Certain HLA alleles consistently contributed more than others to the total virus-specific CD8+ T cell response during primary infection, and also reduced the absolute magnitude of responses restricted by other alleles if coexpressed in the same individual, consistent with immunodomination. Furthermore, individual HLA class I alleles that have been associated with slower HIV-1 disease progression contributed strongly to the total HIV-1-specific CD8+ T cell response during primary infection. Conclusions These data demonstrate consistent immunodominance patterns of HIV-1-specific CD8+ T cell responses during primary infection and provide a mechanistic explanation for the protective effect of specific HLA class I alleles on HIV-1 disease progression. %U http://www.plosmedicine.org/article/info%3Adoi%2F10.1371%2Fjournal.pmed.0030403