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Search Results: 1 - 10 of 224395 matches for " Tyler R. Mowll "
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Argon Assisted Growth of Epitaxial Graphene on Cu(111)
Zachary R. Robinson,Parul Tyagi,Tyler R. Mowll,James B. Hannon,Carl A. Ventrice Jr
Physics , 2013, DOI: 10.1103/PhysRevB.86.235413
Abstract: The growth of graphene by catalytic decomposition of ethylene on Cu(111) in an ultra-high vacuum system was investigated with low energy electron diffraction, low energy electron microscopy, and atomic force microscopy. Attempts to form a graphene overlayer using ethylene at pressures as high as 10 mTorr and substrate temperatures as high as 900 $^\circ$C resulted in almost no graphene growth. By using an argon overpressure, the growth of epitaxial graphene on Cu(111) was achieved. The suppression of graphene growth without the use of an argon overpressure is attributed to Cu sublimation at elevated temperatures. During the initial stages of growth, a random distribution of rounded graphene islands is observed. The predominant rotational orientation of the islands is within $\pm1^\circ$ of the Cu(111) substrate lattice.
Influence of Chemisorbed Oxygen on the Growth of Graphene on Cu(100) by Chemical Vapor Deposition
Zachary R. Robinson,Eng Wen Ong,Tyler R. Mowll,Parul Tyagi,D. Kurt Gaskill,Heike Geisler,Carl A. Ventrice Jr
Physics , 2014, DOI: 10.1021/jp410142r
Abstract: Understanding the influence that copper substrate surface symmetry and oxygen impurities have on the growth of graphene by chemical vapor deposition is important for developing techniques for producing high quality graphene. Therefore, we have studied the growth of graphene by catalytic decomposition of ethylene in an ultra-high vacuum chamber on both a clean Cu(100) surface and a Cu(100) surface pre-dosed with a layer of chemisorbed oxygen. The crystal structure of the graphene films was characterized with \emph{in-situ} low energy electron diffraction. By heating the clean Cu(100) substrate from room temperature to the growth temperature in ethylene, epitaxial graphene films were formed. The crystal quality was found to depend strongly on the growth temperature. At 900 $^\circ$C, well-ordered two-domain graphene films were formed. Pre-dosing the Cu(100) surface with a chemisorbed layer of oxygen before graphene growth was found to adversely affect the crystal quality of the graphene overlayer by inducing a much higher degree of rotational disorder of the graphene grains with respect to the Cu(100) substrate. The growth morphology of the graphene islands during the initial stages of nucleation was monitored with \emph{ex-situ} scanning electron microscopy. The nucleation rate of the graphene islands was observed to drop by an order of magnitude by pre-dosing the Cu(100) surface with a chemisorbed oxygen layer before growth. This reduction in nucleation rate results in the formation of much larger graphene islands. Therefore, the presence of oxygen during graphene growth affects both the relative orientation and average size of grains within the films grown on Cu(100) substrates.
Sequences of reflection functors and the preprojective component of a valued quiver
Mark Kleiner,Helene R. Tyler
Mathematics , 2006,
Abstract: This paper concerns preprojective representations of a finite connected valued quiver without oriented cycles. For each such representation, an explicit formula in terms of the geometry of the quiver gives a unique, up to a certain equivalence, shortest (+)-admissible sequence such that the corresponding composition of reflection functors annihilates the representation. The set of equivalence classes of the above sequences is a partially ordered set that contains a great deal of information about the preprojective component of the Auslander-Reiten quiver. The results apply to the study of reduced words in the Weyl group associated to an indecomposable symmetrizable generalized Cartan matrix.
The Auslander-Reiten Components in the Rhombic Picture
Markus Schmidmeier,Helene R. Tyler
Mathematics , 2012,
Abstract: For an indecomposable module $M$ over a path algebra of a quiver of type $\widetilde{\mathbb A}_n$, the Gabriel-Roiter measure gives rise to four new numerical invariants; we call them the multiplicity, and the initial, periodic and final parts. We describe how these invariants for $M$ and for its dual specify the position of $M$ in the Auslander-Reiten quiver of the algebra.
Photoevaporation as a Truncation Mechanism for Circumplanetary Disks
Tyler R. Mitchell,Glen R. Stewart
Physics , 2011, DOI: 10.1088/0004-6256/142/5/168
Abstract: We investigate the conditions under which the regular satellites of Jupiter and Saturn formed. The final stage of giant planet accretion is thought to occur slowly over a relatively long, 10 Myr, timescale. Gas accretion during this stage, through a completely or partially opened gap in the solar nebula, occurs slowly allowing for the condensation of ices, and incomplete differentiation, seen in the regular satellites of the giant planets. Furthermore, the dichotomy seen in the Jovian and Saturnian systems may be explained as this infall wanes or is completely shutoff as a result of gap opening or global depletion of gas in the solar nebula. We present one-dimensional simulations of circumplanetary disks that couple the viscous transport of material with the loss of mass at the disk outer edge by ultraviolet photoevaporation as well as the infall of material from the solar nebula. We find that the circumplanetary disks of these protoplanets are truncated, as a result of photoevaporation, at a range of values with the mean corresponding to $\approx$ 0.16 Hill radii. These truncation radii are broadly consistent with the current locations of the regular satellite systems of Jupiter and Saturn. We also find that photoevaporation can successfully act as a clearing mechanism for circumplanetary nebulae on the potentially short timescales, 100-10,000 yr, over which mass accretion from the solar nebula wanes as a result of gap opening. Such a rapid clearing of the circum-Jovian disk may be required to explain the survival of the Galilean satellites.
Evolution of the Solar Nebula and Planet Growth Under the Influence of Photoevaporation
Tyler R. Mitchell,Glen R. Stewart
Physics , 2010, DOI: 10.1088/0004-637X/722/2/1115
Abstract: The recent development of a new minimum mass solar nebula, under the assumption that the giant planets formed in the compact configuration of the Nice model, has shed new light on planet formation in the solar system. Desch previously found that a steady state protoplanetary disk with an outer boundary truncated by photoevaporation by an external massive star would have a steep surface density profile. In a completely novel way, we have adapted numerical methods for solving propagating phase change problems to astrophysical disks. We find that a one-dimensional time-dependent disk model that self-consistently tracks the location of the outer boundary produces shallower profiles than those predicted for a steady state disk. The resulting surface density profiles have a radial dependence of Sigma(r) \alpha r^(-1.25+0.88-0.33) with a power-law exponent that in some models becomes as large as ~Sigma(r) \alpha r^(-2.1). The evolutionary timescales of the model disks can be sped up or slowed down by altering the amount of far-ultraviolet flux or the viscosity parameter alpha. Slowing the evolutionary timescale by decreasing the incident far ultraviolet flux, or similarly by decreasing alpha, can help to grow planets more rapidly, but at the cost of decreased migration timescales. Although they similarly affect relevant timescales, changes in the far ultraviolet flux or alpha produce disks with drastically different outer radii. Despite their differences, these disks are all characterized by outward mass transport, mass loss at the outer edge, and a truncated outer boundary. The transport of mass from small to large radii can potentially prevent the rapid inward migration of Jupiter and Saturn, while at the same time supply enough mass to the outer regions of the disk for the formation of Uranus and Neptune.
The Species Richness of Vascular Plants and Amphibia in Major Plant Communities in Temperate to Tropical Australia: Relationship with Annual Biomass Production
R. L. Specht,M. J. Tyler
International Journal of Ecology , 2010, DOI: 10.1155/2010/635852
Abstract: Aerodynamic fluxes (frictional, thermal, evaporative) in the atmosphere as it flows over and through a plant community determine the Foliage Projective Covers and eco-morphological attributes of new leaves developed annually in overstorey and understorey strata. The number of leaves produced on vertical foliage shoots depends on available soil water and nutrients, also ambient temperature, during this short growth season. Stem density (number of stems per hectare) and species richness (number of species per hectare) in the overstorey of major Floristic Groups are correlated with annual shoot growth (ASG, t ha?1) in that stratum. Species richness in the overstorey increases in the climatic gradient from the arid to the humid zone as well as with increasing air temperatures (about 10oC) from temperate to tropical Australia. Species richness in the understorey is highest in plant communities in temperate Australia, decreasing in the temperature gradient towards the tropics. As with other major plant and animal groups within an ecosystem, the species richness of Amphibia is correlated with the amount of solar energy fixed (per annum) by the major plant formation in the region—a photosynthetic potential determined by the foliage shoots (ASG, t ha?1) produced annually in the overstorey.
Characterizing the Host and Symbiont Proteomes in the Association between the Bobtail Squid, Euprymna scolopes, and the Bacterium, Vibrio fischeri
Tyler R. Schleicher, Spencer V. Nyholm
PLOS ONE , 2011, DOI: 10.1371/journal.pone.0025649
Abstract: The beneficial symbiosis between the Hawaiian bobtail squid, Euprymna scolopes, and the bioluminescent bacterium, Vibrio fischeri, provides a unique opportunity to study host/microbe interactions within a natural microenvironment. Colonization of the squid light organ by V. fischeri begins a lifelong association with a regulated daily rhythm. Each morning the host expels an exudate from the light organ consisting of 95% of the symbiont population in addition to host hemocytes and shed epithelial cells. We analyzed the host and symbiont proteomes of adult squid exudate and surrounding light organ epithelial tissue using 1D- and 2D-polyacrylamide gel electrophoresis and multidimensional protein identification technology (MudPIT) in an effort to understand the contribution of both partners to the maintenance of this association. These proteomic analyses putatively identified 1581 unique proteins, 870 proteins originating from the symbiont and 711 from the host. Identified host proteins indicate a role of the innate immune system and reactive oxygen species (ROS) in regulating the symbiosis. Symbiont proteins detected enhance our understanding of the role of quorum sensing, two-component signaling, motility, and detoxification of ROS and reactive nitrogen species (RNS) inside the light organ. This study offers the first proteomic analysis of the symbiotic microenvironment of the adult light organ and provides the identification of proteins important to the regulation of this beneficial association.
Development of a transient expression assay for detecting environmental oestrogens in zebrafish and medaka embryos
Okhyun Lee, Charles R Tyler, Tetsuhiro Kudoh
BMC Biotechnology , 2012, DOI: 10.1186/1472-6750-12-32
Abstract: The response of our construct to oestrogen exposure in zebrafish embryos was examined using a transient expression assay. The two plasmids were injected into 1–2 cell staged zebrafish embryos, and the embryos were exposed to various oestrogens including the natural steroid oestrogen 17?-oestradiol (E2), the synthetic oestrogen 17α- ethinyloestradiol (EE2), and the relatively weak environmental oestrogen nonylphenol (NP), and GFP expression was examined in the subsequent embryos using fluorescent microscopy. There was no GFP expression detected in unexposed embryos, but specific and mosaic expression of GFP was detected in the liver, heart, somite muscle and some other tissue cells for exposures to steroid oestrogen treatments (EE2; 10?ng/L, E2; 100?ng/L, after 72?h exposures). For the NP exposures, GFP expression was observed at 10?μg NP/L after 72?h (100?μg NP/L was toxic to the fish). We also demonstrate that our construct works in medaka, another model fish test species, suggesting the transient assay is applicable for testing oestrogenic chemicals in fish generally.Our results indicate that the transient expression assay system can be used as a rapid integrated testing system for environmental oestrogens and to detect the oestrogenic target sites in developing fish embryos.
Appropriate 'housekeeping' genes for use in expression profiling the effects of environmental estrogens in fish
Amy L Filby, Charles R Tyler
BMC Molecular Biology , 2007, DOI: 10.1186/1471-2199-8-10
Abstract: We sought to identify appropriate genes for use as internal controls in experimental treatments with estrogen by analyzing the expression of eight functionally distinct 'housekeeping' genes (18S ribosomal RNA [18S rRNA], ribosomal protein l8 [rpl8], elongation factor 1 alpha [ef1a], glucose-6-phosphate dehydrogenase [g6pd], beta actin [bactin], glyceraldehyde-3-phosphate dehydrogenase [gapdh], hypoxanthine phosphoribosyltransferase 1 [hprt1], and tata box binding protein [tbp]) following exposure to the environmental estrogen, 17α-ethinylestradiol (EE2), in the fathead minnow (Pimephales promelas). Exposure to 10 ng/L EE2 for 21 days down-regulated the expression of ef1a, g6pd, bactin and gapdh in the liver, and bactin and gapdh in the gonad. Some of these effects were gender-specific, with bactin in the liver and gapdh in the gonad down-regulated by EE2 in males only. Furthermore, when ef1a, g6pd, bactin or gapdh were used for normalization, the hepatic expression of two genes of interest, vitellogenin (vtg) and cytochrome P450 1A (cyp1a) following exposure to EE2 was overestimated.Based on the data presented, we recommend 18S rRNA, rpl8, hprt1 and/or tbp, but not ef1a, g6pd, bactin and/or gapdh, as likely appropriate internal controls in real-time PCR studies of estrogens effects in fish. Our studies show that pre-validation of control genes considering the scope and nature of the experiments to be performed, including both gender and tissue type, is critical for accurate assessments of the effects of environmental estrogens on gene expression in fish.Over the past 25 years, there has been increasing concern about the impacts of the plethora of natural and anthropogenic chemicals discharged into the aquatic environment that disrupt the endocrine system of wildlife [1]. Typically, these endocrine disrupting chemicals (EDCs) exert their actions via interactions with the nuclear steroid hormone receptors. The most well characterised, and of greatest current concern,
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