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Search Results: 1 - 10 of 286986 matches for " Heidi E. K. Huttunen-Hennelly "
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Investigating the Effects of Hydrophobicity and Charge on the Therapeutic Ability of the Antimicrobial Histatin 8 Peptide for Potential Use in Oral Applications
Scott M. G. Matheson,Naowarat Cheeptham,Heidi E. K. Huttunen-Hennelly
International Journal of Biology , 2013, DOI: 10.5539/ijb.v5n2p85
Abstract: Advances in technology allow for the construction of synthetic antibiotics, which includes the development of de novo antimicrobial peptides (AMPs). The contents of AMPs including amino acids, chain length, hydrophobicity, ring structure/rigidity, terminus and charge when modified can alter the antimicrobial properties. A special family of peptides called histatins is naturally excreted by oral glands as an immune response, and previous research shows their potential for treating thrush. Histatin 8 is known to have antimicrobial activity against yeast strains and the goal of this study was to synthesize histatin 8 and two novel derivatives (delt 1 and delt 4) that fall at extremes of each other with regard to charge and hydrophobicity in order to investigate the properties that could optimize antimicrobial properties. The derivatives were characterized using various chemical and biological assays to investigate the effects of charge and hydrophobicity on bioactivity. Compared to histatin 8, delt 4’s minimum inhibitory concentration (MIC) was decreased more than tenfold against Candida tropicalis indicating increased antimicrobial activity. Re-inoculation confirmed fungicidal properties.
Interplanetary fast forward shocks and energetic storm particle events above 1.5 MeV
K. Huttunen-Heikinmaa ,E. Valtonen
Annales Geophysicae (ANGEO) , 2009,
Abstract: Interplanetary (IP) shock passages are usually identified by abrupt changes in the plasma parameters, but sometimes they are also associated with energetic storm particles (ESPs). The maximum observed energies of ESPs usually reach a few MeVs per nucleon and occasionally even a few hundred MeVs per nucleon. We have carried out a statistical study of ESP events observed by SOHO/ERNE above 1.5 MeV during the seven-year period between May 1996 and April 2003. In the first stage, we gathered a comprehensive database of IP shock candidates using several ready-made shock lists. We defined a qualitative classification for the ESP signals and studied their association with fast forward shocks. We present a survey of the overall statistics of ESP associations with fast forward shocks and the yearly amount of the shocks and associated ESP events during the 7-year study period. Our most important findings are that only 40% of the observed interplanetary fast forward shocks accelerate ESPs to energies greater than 1.5 MeV and that the high-energy ESP-effectiveness of the fast forward shocks has a solar cycle dependence. The yearly ESP-effectiveness varied from 11%, in May 1996–April 1997 (~activity minimum), to 53% in May 2000–April 2001 (~activity maximum). We also performed a quantitative analysis of the proton power law spectra at the time of the shock passage. We found that the average spectral index of ESPs was 3.6 with the standard deviation of the distribution of 1.3. The ESP events had significantly larger power law factors than the reference spectra, calculated every day at a certain time for comparison.
Importance of post-shock streams and sheath region as drivers of intense magnetospheric storms and high-latitude activity
K. E. J. Huttunen,H. E. J. Koskinen
Annales Geophysicae (ANGEO) , 2004,
Abstract: Magnetic disturbances in the Earth's magnetosphere can be very different depending on the type of solar wind driver. We have determined the solar wind causes for intense magnetic storms (Dst<-100nT) over a 6-year period from the beginning of 1997 to the end of 2002, using observations by the WIND and ACE spacecraft. We have taken into consideration whether the storm was caused by the sheath region or by the following interplanetary coronal mass ejection (ICME). We also divided ICMEs into those having a magnetic cloud structure and those without such a structure. We found that post-shock streams and sheath regions caused the largest fraction of intense magnetic storms. We present four periods of magnetospheric activity in more detail. One of the events was caused by a magnetic cloud (10-11 August 2000) and the rest (13-14 July 2000, 8-9 June 2000 and 17-18 April 2001) by sheath regions and post-shock streams. We have used several magnetic indices to monitor the low- and high-latitude magnetospheric response to these different solar wind structures. Two of the events are interesting examples where at first strong high-latitude activity took place and the low-latitude response followed several hours later. These events demonstrate that low- and high-latitude activity do not always occur concurrently and the level of activity may be very different. According to the examples shown the evolution of the pressure-corrected Dst index was more difficult to model for a sheath region or a post-shock stream driven storm than for a storm caused by a magnetic cloud.
Wind observations of low energy particles within a solar wind reconnection region
K. E. J. Huttunen, S. D. Bale,C. Salem
Annales Geophysicae (ANGEO) , 2008,
Abstract: We report characteristics of thermal particle observations during the encounter of the Wind satellite with the separatrix and the outflow domains of a reconnection event on 22 July 1999 in the solar wind. During the studied event the electrostatic analyzers on Wind were transmitting three-dimensional electron and proton distributions in a burst mode every 3 s, the spin period of the spacecraft. The event was associated with a magnetic shear angle of 114° and a large guide magnetic field. The observations suggest that Wind crossed the separatrix and outflow regions about a thousand of ion skin depths from the X-line. At the leading separator boundary, a strong proton beam was identified that originated from the direction of the X-line. In the separatrix and the outflow regions, the phase space distributions of thermal electrons displayed field aligned bidirectional anisotropy. During the crossings of the current sheets bounding the outflow region, we identified two adjacent layers in which the dominant thermal electron flows were towards the X-line at the inner edges of the current sheets and away from the X-line at the outer edges. Interestingly, simulation studies and observations in the Earth's magnetosphere have revealed that the electron flows are reversed, consistent with the Hall current system.
Correcting for interplanetary scattering in velocity dispersion analysis of solar energetic particles
T. Laitinen,K. Huttunen-Heikinmaa,E. Valtonen,S. Dalla
Physics , 2015, DOI: 10.1088/0004-637X/806/1/114
Abstract: To understand the origin of Solar Energetic Particles (SEPs), we must study their injection time relative to other solar eruption manifestations. Traditionally the injection time is determined using the Velocity Dispersion Analysis (VDA) where a linear fit of the observed event onset times at 1 AU to the inverse velocities of SEPs is used to derive the injection time and path length of the first-arriving particles. VDA does not, however, take into account that the particles that produce a statistically observable onset at 1 AU have scattered in the interplanetary space. We use Monte Carlo test particle simulations of energetic protons to study the effect of particle scattering on the observable SEP event onset above pre-event background, and consequently on VDA results. We find that the VDA results are sensitive to the properties of the pre-event and event particle spectra as well as SEP injection and scattering parameters. In particular, a VDA-obtained path length that is close to the nominal Parker spiral length does not imply that the VDA injection time is correct. We study the delay to the observed onset caused by scattering of the particles and derive a simple estimate for the delay time by using the rate of intensity increase at the SEP onset as a parameter. We apply the correction to a magnetically well-connected SEP event of June 10 2000, and show it to improve both the path length and injection time estimates, while also increasing the error limits to better reflect the inherent uncertainties of VDA.
Properties and geoeffectiveness of magnetic clouds in the rising, maximum and early declining phases of solar cycle 23
K. E. J. Huttunen, R. Schwenn, V. Bothmer,H. E. J. Koskinen
Annales Geophysicae (ANGEO) , 2005,
Abstract: The magnetic structure and geomagnetic response of 73 magnetic clouds (MC) observed by the WIND and ACE satellites in solar cycle 23 are examined. The results have been compared with the surveys from the previous solar cycles. The preselected candidate MC events were investigated using the minimum variance analysis to determine if they have a flux-rope structure and to obtain the estimation for the axial orientation (θC, φC). Depending on the calculated inclination relative to the ecliptic we divided MCs into "bipolar" (θC<45°) and "unipolar" (θC>45°). The number of observed MCs was largest in the early rising phase, although the halo CME rate was still low. It is likely that near solar maximum we did not identify all MCs at 1AU, as they were crossed far from the axis or they had interacted strongly with the ambient solar wind or with other CMEs. The occurrence rate of MCs at 1AU is also modified by the migration of the filament sites on the Sun towards the poles near solar maximum and by the deflection of CMEs towards the equator due to the fast solar wind flow from large polar coronal holes near solar minimum. In the rising phase nearly all bipolar MCs were associated with the rotation of the magnetic field from the south at the leading edge to the north at the trailing edge. The results for solar cycles 21-22 showed that the direction of the magnetic field in the leading portion of the MC starts to reverse at solar maximum. At solar maximum and in the declining phase (2000-2003) we observed several MCs with the rotation from the north to the south. We observed unipolar (i.e. highly inclined) MCs frequently during the whole investigated period. For solar cycles 21-22 the majority of MCs identified in the rising phase were bipolar while in the declining phase most MCs were unipolar. The geomagnetic response of a given MC depends greatly on its magnetic structure and the orientation of the sheath fields. For each event we distinguished the effect of the sheath fields and the MC fields. All unipolar MCs with magnetic field southward at the axis were geoeffective (Dst<-50nT) while those with the field pointing northward did not cause magnetic storms at all. About half of the all identified MCs were not geoffective or the sheath fields preceding the MC caused the storm. MCs caused more intense magnetic storms (Dst<-100nT) than moderate magnetic storms (-50nT ≥Dst≥-100nT).
Influence of observed diurnal cycles of aerosol optical depth on aerosol direct radiative effect
A. Arola,T. F. Eck,J. Huttunen,K. E. J. Lehtinen
Atmospheric Chemistry and Physics Discussions , 2013, DOI: 10.5194/acpd-13-10327-2013
Abstract: The diurnal variability of aerosol optical depth (AOD) can be significant, depending on location and dominant aerosol type. However, these diurnal cycles have rarely been taken into account in measurement-based estimates of aerosol direct radiative forcing (ADRF) or aerosol direct radiative effect (ADRE). The objective of our study was to estimate the influence of diurnal aerosol variability on the top of the atmosphere ADRE estimates. By including all the possible AERONET sites, we wanted to assess the influence on global ADRE estimates, while by focusing also in more detail on some selected sites of strongest impact, our goal was to also see the possible impact regionally. We calculated ADRE with different assumptions about the daily AOD variability: taking the observed daily AOD cycle into account and assuming diurnally constant AOD. Moreover, we estimated the corresponding differences in ADREs, if the single AOD value for the daily mean was taken from the the Moderate Resolution Imaging Spectroradiometer (MODIS) Terra or Aqua overpass times, instead of accounting for the true observed daily variability. The mean impact of diurnal AOD variability on 24 h ADRE estimates, averaged over all AERONET sites, was rather small and it was relatively small even for the cases when AOD was chosen to correspond to the Terra or Aqua overpass time. This was true on average over all AERONET sites, while clearly there can be much stronger impact in individual sites. Examples of some selected sites demonstrated that the strongest observed AOD variability (the strongest morning afternoon contrast) does not typically result in a significant impact on 24 h ADRE. In those cases, the morning and afternoon AOD patterns are opposite and thus the impact on 24 h ADRE, when integrated over all solar zenith angles, is reduced. The most significant effect on daily ADRE was induced by AOD cycles with either maximum or minimum AOD close to local noon. In these cases, the impact on 24 h ADRE was typically around 0.1–0.2 W m 2 (both positive and negative).
The composition of nucleation and Aitken modes particles during coastal nucleation events: evidence for marine secondary organic contribution
P. Vaattovaara, P. E. Huttunen, Y. J. Yoon, J. Joutsensaari, K. E. J. Lehtinen, C. D. O'Dowd,A. Laaksonen
Atmospheric Chemistry and Physics (ACP) & Discussions (ACPD) , 2006,
Abstract: Newly-formed nanometer-sized particles have been observed at coastal and marine environments world wide. Organic species have so far not been detected in those newly-formed nucleation mode particles. In this study, we applied the ultrafine organic tandem differential mobility analyzer method to study the possible existence of an organic fraction in recently formed coastal nucleation mode particles (d<20 nm) at the Mace Head research station. Furthermore, effects of those nucleation events on potential cloud condensation nuclei were studied. The coastal events were typical for the Mace Head region and they occurred at low tide conditions during efficient solar radiation and enhanced biological activity in spring 2002. Additionally, a pulse height analyzer ultrafine condensation particle counter technique was used to study the composition of newly-formed particles formed in low tide conditions during a lower biological activity in October 2002. The overall results of the ultrafine organic tandem differential mobility analyzer and the pulse height analyzer ultrafine condensation particle counter measurements indicate that those coastally/marinely formed nucleation mode particles include a remarkable fraction of secondary organic products, beside iodine oxides, which are likely to be responsible for the nucleation. During clean marine air mass conditions, the origin of those secondary organic oxidation compounds can be related to marine coast and open ocean biota and thus a major fraction of the organics may originate from biosynthetic production of alkenes such as isoprene and their oxidation driven by iodine radicals, hydroxyl radicals, acid catalysis, and ozone during efficient solar radiation. During modified marine conditions, also anthropogenic secondary organic compounds may contribute to the nucleation mode organic mass, in addition to biogenic secondary organic compounds. Thus, the ultrafine organic tandem differential mobility analyzer results suggest that the secondary organic compounds may, in addition to being significant contributors to the nucleation mode processes, accelerate the growth of freshly nucleated particles and increase their survival probability to cloud condensation nuclei and even larger radiatively active particle sizes. The results give new insights to the marine/coastal particle formation, growth, and properties. The marine biota driven secondary organic contributions to marine/coastal particle formation and composition can be anticipated in other species specific biologically active oceans and fresh-waters areas around the world and thus, they may be significant also to the global radiative bugdet, atmosphere-biosphere feedbacks, and climate change.
Cluster observations of sudden impulses in the magnetotail caused by interplanetary shocks and pressure increases
K. E. J. Huttunen, J. Slavin, M. Collier, H. E. J. Koskinen, A. Szabo, E. Tanskanen, A. Balogh, E. Lucek,H. Rème
Annales Geophysicae (ANGEO) , 2005,
Abstract: Sudden impulses (SI) in the tail lobe magnetic field associated with solar wind pressure enhancements are investigated using measurements from Cluster. The magnetic field components during the SIs change in a manner consistent with the assumption that an antisunward moving lateral pressure enhancement compresses the magnetotail axisymmetrically. We found that the maximum variance SI unit vectors were nearly aligned with the associated interplanetary shock normals. For two of the tail lobe SI events during which Cluster was located close to the tail boundary, Cluster observed the inward moving magnetopause. During both events, the spacecraft location changed from the lobe to the magnetospheric boundary layer. During the event on 6 November 2001 the magnetopause was compressed past Cluster. We applied the 2-D Cartesian model developed by collier98 in which a vacuum uniform tail lobe magnetic field is compressed by a step-like pressure increase. The model underestimates the compression of the magnetic field, but it fits the magnetic field maximum variance component well. For events for which we could determine the shock normal orientation, the differences between the observed and calculated shock propagation times from the location of WIND/Geotail to the location of Cluster were small. The propagation speeds of the SIs between the Cluster spacecraft were comparable to the solar wind speed. Our results suggest that the observed tail lobe SIs are due to lateral increases in solar wind dynamic pressure outside the magnetotail boundary.
Central gene expression changes associated with enhanced neuroendocrine and autonomic response habituation to repeated noise stress after voluntary wheel running in rats
Sarah K. Sasse,Heidi E. W. Day,Serge Campeau
Frontiers in Physiology , 2013, DOI: 10.3389/fphys.2013.00341
Abstract: Accumulating evidence indicates that regular physical exercise benefits health in part by counteracting some of the negative physiological impacts of stress. While some studies identified reductions in some measures of acute stress responses with prior exercise, limited data were available concerning effects on cardiovascular function, and reported effects on hypothalamic-pituitary-adrenocortical (HPA) axis responses were largely inconsistent. Given that exposure to repeated or prolonged stress is strongly implicated in the precipitation and exacerbation of illness, we proposed the novel hypothesis that physical exercise might facilitate adaptation to repeated stress, and subsequently demonstrated significant enhancement of both HPA axis (glucocorticoid) and cardiovascular (tachycardia) response habituation to repeated noise stress in rats with long-term access to running wheels compared to sedentary controls. Stress habituation has been attributed to modifications of brain circuits, but the specific sites of adaptation and the molecular changes driving its expression remain unclear. Here, in situ hybridization histochemistry was used to examine regulation of select stress-associated signaling systems in brain regions representing likely candidates to underlie exercise-enhanced stress habituation. Analyzed brains were collected from active (6 weeks of wheel running) and sedentary rats following control, acute, or repeated noise exposures that induced a significantly faster rate of glucocorticoid response habituation in active animals but preserved acute noise responsiveness. Nearly identical experimental manipulations also induce a faster rate of cardiovascular response habituation in exercised, repeatedly stressed rats. The observed regulation of the corticotropin-releasing factor and brain-derived neurotrophic factor systems across several brain regions suggests widespread effects of voluntary exercise on central functions and related adaptations to stress across multiple response modalities.
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