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Search Results: 1 - 10 of 588 matches for " Sonoko Shimada "
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Implication of granulocyte-macrophage colony-stimulating factor induced neutrophil gelatinase-associated lipocalin in pathogenesis of rheumatoid arthritis revealed by proteome analysis
Masayoshi Katano, Kazuki Okamoto, Mitsumi Arito, Yuki Kawakami, Manae S Kurokawa, Naoya Suematsu, Sonoko Shimada, Hiroshi Nakamura, Yang Xiang, Kayo Masuko, Kusuki Nishioka, Kazuo Yudoh, Tomohiro Kato
Arthritis Research & Therapy , 2009, DOI: 10.1186/ar2587
Abstract: Neutrophils stimulated by GM-CSF were divided into four subcellular fractions: cytosol, membrane/organelle, nuclei, and cytoskeleton. Then, proteins were extracted from each fraction and digested by trypsin. The produced peptides were detected using matrix-assisted laser desorption ionisation-time-of-flight mass spectrometry (MALDI-TOF MS).We detected 33 peptide peaks whose expression was upregulated by more than 2.5-fold in GM-CSF stimulated neutrophils and identified 11 proteins out of the 33 peptides using MALDI-TOF/TOF MS analysis and protein database searches. One of the identified proteins was neutrophil gelatinase-associated lipocalin (NGAL). We confirmed that the level of NGAL in SF was significantly higher in patients with RA than in those with osteoarthritis. We next addressed possible roles of the increased NGAL in RA. We analysed proteome alteration of synoviocytes from patients with RA by treatment with NGAL in vitro. We found that, out of the detected protein spots (approximately 3,600 protein spots), the intensity of 21 protein spots increased by more than 1.5-fold and the intensity of 10 protein spots decreased by less than 1 to 1.5-fold as a result of the NGAL treatment. Among the 21 increased protein spots, we identified 9 proteins including transitional endoplasmic reticulum ATPase (TERA), cathepsin D, and transglutaminase 2 (TG2), which increased to 4.8-fold, 1.5-fold and 1.6-fold, respectively. Two-dimensional electrophoresis followed by western blot analysis confirmed the upregulation of TERA by the NGAL treatment and, moreover, the western blot analysis showed that the NGAL treatment changed the protein spots caused by post-translational modification of TERA. Furthermore, NGAL cancelled out the proliferative effects of fibroblast growth factor (FGF)-2 and epidermal growth factor (EGF) on chondrocytes from a patient with RA and proliferative effect of FGF-2 on chondrosarcoma cells.Our results indicate that GM-CSF contributes to the pathogenesis
Rapid progress of DNA replication studies in Archaea, the third domain of life
Yoshizumi Ishino,Sonoko Ishino
Science China Life Sciences , 2012, DOI: 10.1007/s11427-012-4324-9
Abstract: Archaea, the third domain of life, are interesting organisms to study from the aspects of molecular and evolutionary biology. Archaeal cells have a unicellular ultrastructure without a nucleus, resembling bacterial cells, but the proteins involved in genetic information processing pathways, including DNA replication, transcription, and translation, share strong similarities with those of Eukaryota. Therefore, archaea provide useful model systems to understand the more complex mechanisms of genetic information processing in eukaryotic cells. Moreover, the hyperthermophilic archaea provide very stable proteins, which are especially useful for the isolation of replisomal multicomplexes, to analyze their structures and functions. This review focuses on the history, current status, and future directions of archaeal DNA replication studies.
DNA polymerases as useful reagents for biotechnology – the history of developmental research in the field
Sonoko Ishino,Yoshizumi Ishino
Frontiers in Microbiology , 2014, DOI: 10.3389/fmicb.2014.00465
Abstract: DNA polymerase is a ubiquitous enzyme that synthesizes complementary DNA strands according to the template DNA in living cells. Multiple enzymes have been identified from each organism, and the shared functions of these enzymes have been investigated. In addition to their fundamental role in maintaining genome integrity during replication and repair, DNA polymerases are widely used for DNA manipulation in vitro, including DNA cloning, sequencing, labeling, mutagenesis, and other purposes. The fundamental ability of DNA polymerases to synthesize a deoxyribonucleotide chain is conserved. However, the more specific properties, including processivity, fidelity (synthesis accuracy), and substrate nucleotide selectivity, differ among the enzymes. The distinctive properties of each DNA polymerase may lead to the potential development of unique reagents, and therefore searching for novel DNA polymerase has been one of the major focuses in this research field. In addition, protein engineering techniques to create mutant or artificial DNA polymerases have been successfully developing powerful DNA polymerases, suitable for specific purposes among the many kinds of DNA manipulations. Thermostable DNA polymerases are especially important for PCR-related techniques in molecular biology. In this review, we summarize the history of the research on developing thermostable DNA polymerases as reagents for genetic manipulation and discuss the future of this research field.
Intralymphatic Histiocytosis with Rheumatoid Arthritis: Possible Association with the Joint Involvement  [PDF]
Takahide Kaneko, Sonoko Takeuchi, Hajime Nakano, Daisuke Sawamura
Case Reports in Clinical Medicine (CRCM) , 2014, DOI: 10.4236/crcm.2014.33036
Abstract:

Intralymphatic histiocytosis is characterized by dilated vessels containing aggregates of mononuclear histiocytes in their lumina, and the majority of cases have been associated with rheumatoid arthritis (RA). We report a case of a 61-year-old woman with RA who presented with livedo-like erythema and red papules around the right elbow and forearm. Histological examinations demonstrated numerous dilated vessels in the dermis partially filled with medium- to large-sized mononuclear cells. Immunohistochemically, most of the intraluminal cells were CD68-positive histiocytes. Endothelial cells were positive for D2-40, a marker for lymphatic endothelial cells. We diagnosed the patient with intralymphatic histiocytosis based on these clinical and histological findings. Interestingly, the skin manifestations exacerbated

Socially Anxious Tendencies Affect Autonomic Responses during Eye Gaze Perception  [PDF]
Yuki Tsuji, Sotaro Shimada
Psychology (PSYCH) , 2015, DOI: 10.4236/psych.2015.613160
Abstract: Social anxiety disorder is a common psychiatric disorder. The gaze of others is known to frequently induce social anxiety. We conducted a gaze detection experiment to examine the effects of social anxiety on autonomic response, namely heart rate (HR) response. We used the maximum HR deceleration between 0 s and 3 s after stimulus onset as an indicator of emotional stress. Participants were assigned to a high social anxiety (HSA) or low social anxiety (LSA) group on the basis of cut-off scores indicative of clinical levels of stress as per the Japanese version of the Liebowitz Social Anxiety Scale (LSAS-J). Our results showed that HR deceleration was greater for the HSA compared with the LSA group. Moreover, the higher the LSAS-J score was, the greater the increase was in HR deceleration (correlation coefficient rs = 0.52, p < 0.01). Our results suggest that the eye gaze of others can be processed as a threat in individuals with a high tendency towards social anxiety.
Detailed Mechanism and Engineering Applicability of Electrolytic Polymerization Aided by a Magnetic Field in Natural Rubber by Mechanical Approach for Sensing (Part 1): The Effect of Experimental Conditions on Electrolytic Polymerization  [PDF]
Kunio Shimada, Norihiko Saga
World Journal of Mechanics (WJM) , 2016, DOI: 10.4236/wjm.2016.610026
Abstract: Ordinary electrolytic polymerization has involved plastic-type polymer solutions. Rubber, especially natural rubber, is one such polymer solution. Rubber has not been focused on until recently due to the fact that electrolytic polymerization has only a very small effect on rubber. However, when we focus on the C=C bonds of natural rubber, the same electrolytic polymerization is applicable to be enlarged on the natural rubber if a magnetic field and a filler are added. With the application of a magnetic field and a magnetic responsive fluid such as magnetic compound fluid (MCF), the effect of electrolytic polymerization on NR-latex such as plastic-type polymer solutions is enhanced, and the thickness of the vulcanized MCF rubber grows in a short time. The present new method of vulcanization of MCF rubber is effective enough that it is widely used in haptic sensors in various engineering applications. In the present report, as mechanical approach for the sensing, by measuring the temperature under electrolytic polymerization, by investigating the electric and dynamic characteristics, and by observing the magnified appearance of the MCF rubber, we clarified the extrinsic effects of many experimental conditions, including magnetic field strength, applied voltage, the electrodes gap, mass concentration, and the ingredients of the MCF. This report is Part 1, to be followed by another sequential report, Part 2, in which other intrinsic effects on the characteristics are dealt with. The experimental conditions used and the results obtained in the present report provide valuable data that will be useful in the making of MCF rubber.
Detailed Mechanism and Engineering Applicability of Electrolytic Polymerization Aided by a Magnetic Field in Natural Rubber by Mechanical Approach for Sensing (Part 2): Other and Intrinsic Effects on MCF Rubber Property  [PDF]
Kunio Shimada, Norihiko Saga
World Journal of Mechanics (WJM) , 2016, DOI: 10.4236/wjm.2016.610027
Abstract: The same ordinary electrolytic polymerization of plastic-type polymer solution is applicable to natural rubber, with its C=C bonds, if a magnetic field and a filler are added. With the application of a magnetic field and the magnetic responsive fluid known as magnetic compound fluid (MCF), we have clarified the enhancement of the electrolytic polymerization of NR-latex and the growth of the thickness of vulcanized MCF rubber that results from the addition of a magnetic field. The present new method of MCF rubber vulcanization is effective for use in haptic sensors, which are used widely in various engineering applications. In the previous report, part 1 of this study, we investigated many experimental conditions under mechanical approach for sensing: magnetic field strength; applied voltage; electrodes gap; mass concentration, and the ingredients of the MCF. In the present sequential report, part 2, we investigate many other effects on electrolytic polymerization by the same mechanical approach for sensing as in part 1: the Mullins effect; the Piezo effect; vibration; kind of electrode; atmospheric gas. In particular, we clarify that the voltage generates spontaneously in the MCF rubber and that the MCF rubber becomes a Piezo element. These effects on the electrolytic polymerization as well as the effects of the experimental conditions will be useful in engineering applications. By taking the above-mentioned parameters and effects into account, MCF rubber that is electrolytically polymerized with the aid of a magnetic field, the use of MCF as a filler, and doping, can be useful in haptic sensor applications. In particular, the effectiveness of the Piezo element can be shown.
Effect of Signal Filtering on Image Quality of Projection-Based Magnetic Particle Imaging  [PDF]
Kazuki Shimada, Kenya Murase
Open Journal of Medical Imaging (OJMI) , 2017, DOI: 10.4236/ojmi.2017.72005
Abstract: Purpose: Magnetic particle imaging (MPI) allows for imaging of the spatial distribution of magnetic nanoparticles (MNPs) in positive contrast, with high sensitivity, high spatial resolution, and high imaging speed. It is necessary to increase the signal-to-noise ratio to enhance the reliability of MPI. The purpose of this study was to investigate the effect of signal filtering on the image quality and quantitativity in projection-based MPI using phantoms. Materials and Methods: We fabricated two kinds of phantom (cylindrical tube phantom with a diameter of 6 mm and A-shaped phantom) and evaluated the effect of signal filtering in terms of root-mean-square (RMS) granularity and the correlation coefficient between iron concentrations of MNPs and average MPI values for four filter modes (THRU, BPF, BEF, and LPF). In the THRU mode, the signal input was output without passing through the filter. In the BPF mode, only the third-harmonic signal was passed using a band-pass filter (central frequency: 1200 Hz, band width: 1/3 octave). In the BEF mode, the first-harmonic signal was eliminated using a band-elimination filter (central frequency: 400 Hz, band width: 1/3 octave). In the LPF mode, only the signal with a frequency less than the third-harmonic frequency was passed using a low-pass filter (cut-off frequency: 1200 Hz, -24 ± 2 dB/octave). The RMS granularity was obtained by calculating standard deviations of the pixel values in the MPI image without MNPs, whereas average MPI values were obtained by drawing a circular region of interest with a diameter of 6 mm on the MPI image of the cylindrical tube phantom. Results: When using the filtered back-projection (FBP) method with a ramp filter for image reconstruction, the RMS granularity and correlation coefficient decreased in the order of THRU, BPF, BEF, and LPF. In the BPF mode, however, some artifacts were observed. When using the maximum likelihood-expectation maximization (ML-EM) algorithm with an iteration number of 15, the correlation coefficient decreased in the order of THRU, BPF, BEF, and LPF, whereas the RMS granularity did not largely depend on the filter mode and was significantly (p < 0.05) lower than that for the FBP method for all the filter modes. Conclusion: The BEF mode is adequate for the FBP method in projection-based MPI, whereas THRU is a best option in use of the ML-EM algorithm.
Lock-in-Amplifier Model for Analyzing the Behavior of Signal Harmonics in Magnetic Particle Imaging  [PDF]
Kenya Murase, Kazuki Shimada
Open Journal of Applied Sciences (OJAppS) , 2018, DOI: 10.4236/ojapps.2018.85014
Abstract: The purpose of this study was to present a lock-in-amplifier model for analyzing the behavior of signal harmonics in magnetic particle imaging (MPI) and some simulation results based on this model. In the lock-in-amplifier model, the signal induced by magnetic nanoparticles (MNPs) in a receiving coil was multiplied with a reference signal, and was then fed through a low-pass filter to extract the DC component of the signal (output signal). The MPI signal was defined as the mean of the absolute value of the output signal. The magnetization and particle size distribution of MNPs were assumed to obey the Langevin theory of paramagnetism and a log-normal distribution, respectively, and the strength of the selection magnetic field (SMF) in MPI was assumed to be given by the product of the gradient strength of the SMF and the distance from the field-free region (x). In addition, Gaussian noise was added to the signal induced by MNPs using normally-distributed random numbers. The relationships between the MPI signal and x were calculated for the odd- and even-numbered harmonics and were investigated for various time constants of the low-pass filter used in the lock-in amplifier and particle sizes and their distributions of MNPs. We found that the behavior of the MPI signal largely depended on the time constant of the low-pass filter and the particle size of MNPs. This lock-in-amplifier model will be useful for better understanding, optimizing, and developing MPI, and for designing MNPs appropriate for MPI.
Long-Lasting Consequences of Neonatal Maternal Separation on Social Behaviors in Ovariectomized Female Mice
Mumeko C. Tsuda, Sonoko Ogawa
PLOS ONE , 2012, DOI: 10.1371/journal.pone.0033028
Abstract: Maternal separation (MS) stress is known to induce long-lasting alterations in emotional and anxiety-related behaviors, but effects on social behaviors are not well defined. The present study examined MS effects on female social behaviors in the social investigation (SIT) and social preference (SPT) tests, in addition to non-social behaviors in the open-field (OFT) and light-dark transition (LDT) tests in C57BL/6J mice. All females were tested as ovariectomized to eliminate confounding effects of endogenous estrogen during behavioral testing. Daily MS (3 hr) from postnatal day 1 to 14 did not affect anxiety levels in LDT, but were elevated in OFT with modified behavioral responses to the novel environment. Furthermore, MS altered social investigative behaviors and preference patterns toward unfamiliar stimulus mice in SIT and short- and long-term SPT paradigms. In SIT, MS reduced social investigation duration and increased number of stretched approaches towards both female and male unfamiliar stimulus mice, suggesting increased social anxiety levels in MS females. Similarly, MS heightened levels of social anxiety during short-term SPT but no MS effect on social preference was found. On the other hand, MS females displayed a distinctive preference for female stimuli, unlike control females, when tested for long-term SPT over a prolonged period of 5 days. Evaluation of FosB expression in the paraventricular nucleus, medial and central amygdala following stimulus exposure demonstrated greater number of FosB immunopositive cells in all three brain regions in MS females compared to control females. These results suggest that MS females might differ in neuroendocrine responses toward unfamiliar female and male opponents, which may be associated with modifications in social behaviors found in the present study. Taken together, this study provides new evidence that early life stress modifies female social behaviors by highlighting alterations in behavioral responses to situations involving social as well as non-social novelty.
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